Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF TRANSHYDROGENASE (DI.R127A.NAD+)2(DIII.NADP+)1 ASYMMETRIC COMPLEX
 
Authors :  T. H. Brondijk, G. I. Van Boxel, O. C. Mather, P. G. Quirk, S. A. White, J. B. Jackson
Date :  19 Jan 06  (Deposition) - 28 Feb 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Nad(P) Transhydrogenase Subunits, Nad+, Nadp+, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. H. Brondijk, G. I. Van Boxel, O. C. Mather, P. G. Quirk, S. A. White, J. B. Jackson
The Role Of Invariant Amino Acid Residues At The Hydride Transfer Site Of Proton-Translocating Transhydrogenase.
J. Biol. Chem. V. 281 13345 2006
PubMed-ID: 16533815  |  Reference-DOI: 10.1074/JBC.M513230200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NAD(P) TRANSHYDROGENASE SUBUNIT ALPHA PART 1
    ChainsA, B
    EC Number1.6.1.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGVB3
    Expression System StrainC600
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GenePNTAA, NNTA1
    MutationYES
    Organism ScientificRHODOSPIRILLUM RUBRUM
    Organism Taxid1085
    SynonymPYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA 1, NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA 1, PROTON-TRANSLOCATING TRANSHYDROGENASE COMPONENT 1, DI
 
Molecule 2 - NAD(P) TRANSHYDROGENASE SUBUNIT BETA
    ChainsC
    EC Number1.6.1.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPNIC2
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePET
    FragmentDIII DOMAIN TRANSHYDROGENASE
    GenePNTB, NNTB
    Organism ScientificRHODOSPIRILLUM RUBRUM
    Organism Taxid1085
    SynonymPYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT BETA, NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT BETA, PROTON-TRANSLOCATING TRANSHYDROGENASE NADPH, -BINDING COMPONENT, DIII

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:179 , VAL A:180 , VAL A:182 , ASP A:202 , VAL A:203 , ARG A:204 , ALA A:265 , LEU A:275 , HOH A:521 , LYS B:270BINDING SITE FOR RESIDUE NAD A 500
2AC2SOFTWAREGLN B:132 , GLY C:54 , TYR C:55 , GLY C:56 , VAL C:87 , ALA C:88 , GLY C:89 , ARG C:90 , MET C:91 , PRO C:92 , GLY C:129 , ALA C:130 , ASN C:131 , ASP C:132 , VAL C:133 , LYS C:164 , ARG C:165 , SER C:166 , ALA C:168 , SER C:169 , GLY C:170 , TYR C:171 , GLY C:189 , ASP C:190 , ALA C:191BINDING SITE FOR RESIDUE NAP C 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FR8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FR8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FR8)

(-) PROSITE Motifs  (2, 4)

Asymmetric/Biological Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALADH_PNT_1PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1.PNTAA_RHORT4-30
 
  2A:4-30
B:4-30
PNTAA_RHORU4-30
 
  2A:4-30
B:4-30
2ALADH_PNT_2PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2.PNTAA_RHORT177-202
 
  2A:177-202
B:177-202
PNTAA_RHORU177-202
 
  2A:177-202
B:177-202

(-) Exons   (0, 0)

(no "Exon" information available for 2FR8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:354
 aligned with PNTAA_RHORT | Q2RSB2 from UniProtKB/Swiss-Prot  Length:384

    Alignment length:379
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370         
          PNTAA_RHORT     1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPAL 379
               SCOP domains d2fr8a2 A:1-143,A:327-379 Nicotinamide nucleotide transhydrogenase dI component                                                                d2fr8a1 A:144-326 Nicotinamide nucleotide transhydrogenase dI component                                                                                                                d2fr8a2 A:1-143,A:327-379                             SCOP domains
               CATH domains -2fr8A01 A:2-143,A:327-370  [code=3.40.50.1770, no name defined]                                                                               2fr8A02 A:144-326 NAD(P)-binding Rossmann-like Domain                                                                                                                                  2fr8A01 A:2-143,A:327-370                   --------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.............hhhhhhhhhhhh.eeeee.........hhhhhhhhh.eee.hhhhhhhh..eeeeee...hhhhh..hhhhh....eeeee.hhhhhhhhhhhhhhh..eeee.hhh.........hhhhhhhhhhhhhhhhhhhhhh.................eeeee..hhhhhhhhhhhhhhh.eeeee....hhhhhhhhh..ee..-------------------------..hhhhhhhhh...eeee.............hhhhhhh....eeeee.hhhhh.........eeeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---ALADH_PNT_1  PDB: A:4-30   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALADH_PNT_2  PDB: A:177-20--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fr8 A   1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPAISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFIT-------------------------KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPAL 379
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         -         -     | 250       260       270       280       290       300       310       320       330       340       350       360       370         
                                                                                                                                                                                                                                                     220                       246                                                                                                                                     

Chain A from PDB  Type:PROTEIN  Length:354
 aligned with PNTAA_RHORU | P0C186 from UniProtKB/Swiss-Prot  Length:384

    Alignment length:379
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370         
          PNTAA_RHORU     1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPAL 379
               SCOP domains d2fr8a2 A:1-143,A:327-379 Nicotinamide nucleotide transhydrogenase dI component                                                                d2fr8a1 A:144-326 Nicotinamide nucleotide transhydrogenase dI component                                                                                                                d2fr8a2 A:1-143,A:327-379                             SCOP domains
               CATH domains -2fr8A01 A:2-143,A:327-370  [code=3.40.50.1770, no name defined]                                                                               2fr8A02 A:144-326 NAD(P)-binding Rossmann-like Domain                                                                                                                                  2fr8A01 A:2-143,A:327-370                   --------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.............hhhhhhhhhhhh.eeeee.........hhhhhhhhh.eee.hhhhhhhh..eeeeee...hhhhh..hhhhh....eeeee.hhhhhhhhhhhhhhh..eeee.hhh.........hhhhhhhhhhhhhhhhhhhhhh.................eeeee..hhhhhhhhhhhhhhh.eeeee....hhhhhhhhh..ee..-------------------------..hhhhhhhhh...eeee.............hhhhhhh....eeeee.hhhhh.........eeeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---ALADH_PNT_1  PDB: A:4-30   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALADH_PNT_2  PDB: A:177-20--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fr8 A   1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPAISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFIT-------------------------KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPAL 379
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         -         -     | 250       260       270       280       290       300       310       320       330       340       350       360       370         
                                                                                                                                                                                                                                                     220                       246                                                                                                                                     

Chain B from PDB  Type:PROTEIN  Length:351
 aligned with PNTAA_RHORT | Q2RSB2 from UniProtKB/Swiss-Prot  Length:384

    Alignment length:375
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370     
          PNTAA_RHORT     1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIV 375
               SCOP domains d2fr8b2 B:1-143,B:327-375 Nicotinamide nucleotide transhydrogenase dI component                                                                d2fr8b1 B:144-326 Nicotinamide nucleotide transhydrogenase dI component                                                                                                                d2fr8b2 B:1-143,B:327-375                         SCOP domains
               CATH domains -2fr8B01 B:2-143,B:327-370  [code=3.40.50.1770, no name defined]                                                                               2fr8B02 B:144-326 NAD(P)-binding Rossmann-like Domain                                                                                                                                  2fr8B01 B:2-143,B:327-370                   ----- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.............hhhhhhhhhh...eeeee...hhhhh.hhhhhhh...eee..hhhhhh...eeeeee...hhhhh..hhhhh....eeeee.....hhhhhhhhhhh..eeee.hhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee...eeeee..hhhhhhhhhhhhhhh.eeeee....hhhhhhhh...ee...------------------------.hhhhhhhhhhhh.eeee.............hhhhhhh.....eeee.hhhhh..........eeee..eeee....hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh.eee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---ALADH_PNT_1  PDB: B:4-30   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALADH_PNT_2  PDB: B:177-20----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fr8 B   1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPAISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITV------------------------KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIV 375
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220|        -         -     | 250       260       270       280       290       300       310       320       330       340       350       360       370     
                                                                                                                                                                                                                                                      221                      246                                                                                                                                 

Chain B from PDB  Type:PROTEIN  Length:351
 aligned with PNTAA_RHORU | P0C186 from UniProtKB/Swiss-Prot  Length:384

    Alignment length:375
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370     
          PNTAA_RHORU     1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIV 375
               SCOP domains d2fr8b2 B:1-143,B:327-375 Nicotinamide nucleotide transhydrogenase dI component                                                                d2fr8b1 B:144-326 Nicotinamide nucleotide transhydrogenase dI component                                                                                                                d2fr8b2 B:1-143,B:327-375                         SCOP domains
               CATH domains -2fr8B01 B:2-143,B:327-370  [code=3.40.50.1770, no name defined]                                                                               2fr8B02 B:144-326 NAD(P)-binding Rossmann-like Domain                                                                                                                                  2fr8B01 B:2-143,B:327-370                   ----- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.............hhhhhhhhhh...eeeee...hhhhh.hhhhhhh...eee..hhhhhh...eeeeee...hhhhh..hhhhh....eeeee.....hhhhhhhhhhh..eeee.hhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee...eeeee..hhhhhhhhhhhhhhh.eeeee....hhhhhhhh...ee...------------------------.hhhhhhhhhhhh.eeee.............hhhhhhh.....eeee.hhhhh..........eeee..eeee....hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh.eee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---ALADH_PNT_1  PDB: B:4-30   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALADH_PNT_2  PDB: B:177-20----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fr8 B   1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPAISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITV------------------------KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIV 375
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220|        -         -     | 250       260       270       280       290       300       310       320       330       340       350       360       370     
                                                                                                                                                                                                                                                      221                      246                                                                                                                                 

Chain C from PDB  Type:PROTEIN  Length:174
 aligned with PNTB_RHORT | Q2RSB4 from UniProtKB/Swiss-Prot  Length:464

    Alignment length:174
                                   300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460    
           PNTB_RHORT   291 SVKAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIVQAMN 464
               SCOP domains d2fr8c_ C: Transhydrogenase domain III (dIII)                                                                                                                                  SCOP domains
               CATH domains 2fr8C00 C:30-203 TPP-binding domain                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhh..eeeeeehhhhhhh.hhhhhhhhhhhhhh...eeeeee........hhhhhhhhhh..hhh.eeehhhhh.......eeeee..hhhhhhhhhhh.................eeeeee...........hhhhhh..eeeee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fr8 C  30 SVKAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIVQAMN 203
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199    

Chain C from PDB  Type:PROTEIN  Length:174
 aligned with PNTB_RHORU | P0C188 from UniProtKB/Swiss-Prot  Length:464

    Alignment length:174
                                   300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460    
           PNTB_RHORU   291 SVKAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIVQAMN 464
               SCOP domains d2fr8c_ C: Transhydrogenase domain III (dIII)                                                                                                                                  SCOP domains
               CATH domains 2fr8C00 C:30-203 TPP-binding domain                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhh..eeeeeehhhhhhh.hhhhhhhhhhhhhh...eeeeee........hhhhhhhhhh..hhh.eeehhhhh.......eeeee..hhhhhhhhhhh.................eeeeee...........hhhhhh..eeeee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fr8 C  30 SVKAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIVQAMN 203
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 5)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 5)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FR8)

(-) Gene Ontology  (16, 35)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (PNTAA_RHORT | Q2RSB2)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0008750    NAD(P)+ transhydrogenase (AB-specific) activity    Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD+ and B-specific (i.e. the pro-S hydrogen is transferred) with respect to NADP+.
    GO:0003957    NAD(P)+ transhydrogenase (B-specific) activity    Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+, driving the transfer of a solute or solutes from one side of a membrane to the other. In the course of the reaction (left to right) one H atom is transferred from inside the cell to outside. The reaction is B-specific (i.e. the pro-S hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to both NAD+ and NADP+.
    GO:0070403    NAD+ binding    Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0070404    NADH binding    Interacting selectively and non-covalently with the reduced form, NADH, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
biological process
    GO:0006740    NADPH regeneration    A metabolic process that generates a pool of NADPH by the reduction of NADP+.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain A,B   (PNTAA_RHORU | P0C186)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0008750    NAD(P)+ transhydrogenase (AB-specific) activity    Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD+ and B-specific (i.e. the pro-S hydrogen is transferred) with respect to NADP+.
    GO:0070403    NAD+ binding    Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0070404    NADH binding    Interacting selectively and non-covalently with the reduced form, NADH, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006740    NADPH regeneration    A metabolic process that generates a pool of NADPH by the reduction of NADP+.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain C   (PNTB_RHORU | P0C188)
molecular function
    GO:0008750    NAD(P)+ transhydrogenase (AB-specific) activity    Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD+ and B-specific (i.e. the pro-S hydrogen is transferred) with respect to NADP+.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain C   (PNTB_RHORT | Q2RSB4)
molecular function
    GO:0008750    NAD(P)+ transhydrogenase (AB-specific) activity    Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD+ and B-specific (i.e. the pro-S hydrogen is transferred) with respect to NADP+.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    NAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2fr8)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2fr8
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PNTAA_RHORT | Q2RSB2
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  PNTAA_RHORU | P0C186
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  PNTB_RHORT | Q2RSB4
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  PNTB_RHORU | P0C188
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.6.1.2
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  PNTAA_RHORT | Q2RSB2
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PNTAA_RHORU | P0C186
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PNTB_RHORT | Q2RSB4
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PNTB_RHORU | P0C188
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PNTAA_RHORT | Q2RSB21f8g 1hzz 1l7d 1l7e 1nm5 1ptj 1u28 1u2d 1u2g 1xlt 2frd 2fsv 2oo5 2oor
        PNTAA_RHORU | P0C1861f8g 1hzz 1l7d 1l7e 1nm5 1ptj 1u28 1u2d 1u2g 1xlt 2frd 2fsv 2oo5 2oor
        PNTB_RHORT | Q2RSB41e3t 1hzz 1nm5 1pno 1pnq 1ptj 1u28 1u2d 1u2g 1xlt 2frd 2fsv
        PNTB_RHORU | P0C1881e3t 1hzz 1nm5 1pno 1pnq 1ptj 1u28 1u2d 1u2g 1xlt 2frd 2fsv 2oo5 2oor

(-) Related Entries Specified in the PDB File

1hzz 1nm5 1u28 1u2d 1u2g 1xlt 2frd