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(-) Description

Title :  CRYSTAL STRUCTURE OF REOVIRUS T3D ATTACHMENT PROTEIN SIGMA1 HEAD DOMAIN D345N MUTANT
 
Authors :  T. Stehle, E. Kirchner, T. S. Dermody
Date :  12 Jan 07  (Deposition) - 13 Feb 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Beta-Barrel, Beta-Spiral Repeat, Aspartic Acid Cluster, Greek Key Motif, Trimer, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Schelling, K. M. Guglielmi, E. Kirchner, B. Paetzold, T. S. Dermody, T. Stehle
The Reovirus Sigma1 Aspartic Acid Sandwich: A Trimerization Motif Poised For Conformational Change.
J. Biol. Chem. V. 282 11582 2007
PubMed-ID: 17303562  |  Reference-DOI: 10.1074/JBC.M610805200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - VIRAL ATTACHMENT PROTEIN SIGMA 1
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-4T-3
    Expression System Strain: BL21 (DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: HEAD DOMAIN
    Gene: S1
    Mutation: YES
    Organism Scientific: REOVIRUS SP.
    Organism Taxid: 10891

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:1194 , HOH A:1195 , HOH A:1196 , HOH A:1197 , HOH A:1198BINDING SITE FOR RESIDUE MG A 1001
2AC2SOFTWAREHOH B:599 , HOH B:600 , GLY E:330 , HOH E:1149BINDING SITE FOR RESIDUE MG E 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OJ6)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Tyr A:298 -Pro A:299
2Pro A:376 -Pro A:377
3Tyr B:298 -Pro B:299
4Pro B:376 -Pro B:377
5Tyr C:298 -Pro C:299
6Pro C:376 -Pro C:377
7Tyr D:298 -Pro D:299
8Pro D:376 -Pro D:377
9Tyr E:298 -Pro E:299
10Pro E:376 -Pro E:377
11Tyr F:298 -Pro F:299
12Pro F:376 -Pro F:377

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OJ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OJ6)

(-) Exons   (0, 0)

(no "Exon" information available for 2OJ6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with Q86337_9REOV | Q86337 from UniProtKB/TrEMBL  Length:455

    Alignment length:162
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  
         Q86337_9REOV   294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
               SCOP domains -------------------d2oj6a1 A:313-455 automated matches                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee..eeeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eee.....eeeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oj6 A 294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  


Chain A from PDB  Type:PROTEIN  Length:162
 aligned with SIGM1_REOVD | P03528 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:162
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  
          SIGM1_REOVD   294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGAPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
               SCOP domains -------------------d2oj6a1 A:313-455 automated matches                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee..eeeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eee.....eeeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oj6 A 294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  


Chain B from PDB  Type:PROTEIN  Length:162
 aligned with Q86337_9REOV | Q86337 from UniProtKB/TrEMBL  Length:455

    Alignment length:162
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  
         Q86337_9REOV   294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
               SCOP domains -------------------d2oj6b1 B:313-455 automated matches                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee..eeeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eeee.....eeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oj6 B 294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  


Chain B from PDB  Type:PROTEIN  Length:162
 aligned with SIGM1_REOVD | P03528 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:162
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  
          SIGM1_REOVD   294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGAPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
               SCOP domains -------------------d2oj6b1 B:313-455 automated matches                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee..eeeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eeee.....eeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oj6 B 294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  


Chain C from PDB  Type:PROTEIN  Length:162
 aligned with Q86337_9REOV | Q86337 from UniProtKB/TrEMBL  Length:455

    Alignment length:162
                                   302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
         Q86337_9REOV   293 SPNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
               SCOP domains d2oj6c1 C:293-312   d2oj6c2 C:313-454 automated matches                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeee..eeeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eeee....eeeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oj6 C 293 SPNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
                                   302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  


Chain C from PDB  Type:PROTEIN  Length:162
 aligned with SIGM1_REOVD | P03528 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:162
                                   302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
          SIGM1_REOVD   293 SPNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGAPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
               SCOP domains d2oj6c1 C:293-312   d2oj6c2 C:313-454 automated matches                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeee..eeeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eeee....eeeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oj6 C 293 SPNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
                                   302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  


Chain D from PDB  Type:PROTEIN  Length:160
 aligned with Q86337_9REOV | Q86337 from UniProtKB/TrEMBL  Length:455

    Alignment length:160
                                   304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454
         Q86337_9REOV   295 NLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
               SCOP domains ------------------d2oj6d1 D:313-454 automated matches                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee....eeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eeee....eeeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oj6 D 295 NLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
                                   304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454


Chain D from PDB  Type:PROTEIN  Length:160
 aligned with SIGM1_REOVD | P03528 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:160
                                   304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454
          SIGM1_REOVD   295 NLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGAPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
               SCOP domains ------------------d2oj6d1 D:313-454 automated matches                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee....eeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eeee....eeeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oj6 D 295 NLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
                                   304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454


Chain E from PDB  Type:PROTEIN  Length:161
 aligned with Q86337_9REOV | Q86337 from UniProtKB/TrEMBL  Length:455

    Alignment length:161
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453 
         Q86337_9REOV   294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
               SCOP domains -------------------d2oj6e1 E:313-454 automated matches                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..eeeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eee......eeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oj6 E 294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453 


Chain E from PDB  Type:PROTEIN  Length:161
 aligned with SIGM1_REOVD | P03528 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:161
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453 
          SIGM1_REOVD   294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGAPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
               SCOP domains -------------------d2oj6e1 E:313-454 automated matches                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..eeeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eee......eeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oj6 E 294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453 


Chain F from PDB  Type:PROTEIN  Length:162
 aligned with Q86337_9REOV | Q86337 from UniProtKB/TrEMBL  Length:455

    Alignment length:162
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  
         Q86337_9REOV   294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
               SCOP domains -------------------d2oj6f1 F:313-455 automated matches                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) Reo_sigma1-2oj6F01 F:294-454                                                                                                                                     - Pfam domains (1)
           Pfam domains (2) Reo_sigma1-2oj6F02 F:294-454                                                                                                                                     - Pfam domains (2)
           Pfam domains (3) Reo_sigma1-2oj6F03 F:294-454                                                                                                                                     - Pfam domains (3)
           Pfam domains (4) Reo_sigma1-2oj6F04 F:294-454                                                                                                                                     - Pfam domains (4)
           Pfam domains (5) Reo_sigma1-2oj6F05 F:294-454                                                                                                                                     - Pfam domains (5)
           Pfam domains (6) Reo_sigma1-2oj6F06 F:294-454                                                                                                                                     - Pfam domains (6)
         Sec.struct. author ......eeee..eeeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eee......eeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oj6 F 294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  


Chain F from PDB  Type:PROTEIN  Length:162
 aligned with SIGM1_REOVD | P03528 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:162
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  
          SIGM1_REOVD   294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGAPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
               SCOP domains -------------------d2oj6f1 F:313-455 automated matches                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) Reo_sigma1-2oj6F01 F:294-454                                                                                                                                     - Pfam domains (1)
           Pfam domains (2) Reo_sigma1-2oj6F02 F:294-454                                                                                                                                     - Pfam domains (2)
           Pfam domains (3) Reo_sigma1-2oj6F03 F:294-454                                                                                                                                     - Pfam domains (3)
           Pfam domains (4) Reo_sigma1-2oj6F04 F:294-454                                                                                                                                     - Pfam domains (4)
           Pfam domains (5) Reo_sigma1-2oj6F05 F:294-454                                                                                                                                     - Pfam domains (5)
           Pfam domains (6) Reo_sigma1-2oj6F06 F:294-454                                                                                                                                     - Pfam domains (6)
         Sec.struct. author ......eeee..eeeehhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeee..eee......eeeeee.........hhhhhh.........eeeeeeeeeee.....eeeeeeeeeeeee..eeeeeee........eeee..eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oj6 F 294 PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVNDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT 455
                                   303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 7)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OJ6)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: Reo_sigma (16)

(-) Gene Ontology  (8, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (SIGM1_REOVD | P03528)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0039624    viral outer capsid    The outer layer of a double or triple concentric icosahedral capsid. Outer capsids are part of reoviridae and cystoviridae virions.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

Chain A,B,C,D,E,F   (Q86337_9REOV | Q86337)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.

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  2oj6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q86337_9REOV | Q86337: 2oj5
        SIGM1_REOVD | P03528: 1kke 2oj5 3eoy 3s6x 3s6y 3s6z

(-) Related Entries Specified in the PDB File

1kke THE WILD-TYPE PROTEIN, LONGER VERSION, LOWER RESOLUTION.
2oj5 CRYSTAL STRUCTURE OF REOVIRUS T3D ATTACHMENT PROTEIN SIGMA1 HEAD DOMAIN WILD-TYPE AT 1.75 A RESOLUTION