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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF REOVIRUS T3D ATTACHMENT PROTEIN SIGMA1 DOMAIN D345N MUTANT
Keywords BETA-BARREL, BETA-SPIRAL REPEAT, ASPARTIC ACID CLUSTER, GREE MOTIF, TRIMER, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2OJ6     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   VIRAL ATTACHMENT PROTEIN SIGMA 1  A 162 1249 0
2  Protein   VIRAL ATTACHMENT PROTEIN SIGMA 1  B 162 1249 0
3  Protein   VIRAL ATTACHMENT PROTEIN SIGMA 1  C 162 1247 0
4  Protein   VIRAL ATTACHMENT PROTEIN SIGMA 1  D 160 1234 0
5  Protein   VIRAL ATTACHMENT PROTEIN SIGMA 1  E 161 1241 0
6  Protein   VIRAL ATTACHMENT PROTEIN SIGMA 1  F 162 1249 0
7  Ligand   VIRAL ATTACHMENT PROTEIN SIGMA 1  A 1 0 1
8  Ligand   VIRAL ATTACHMENT PROTEIN SIGMA 1  E 1 0 1
9 Water     953 0 953
total       1924 7469 955
Proteins
Unit 1 PRO294 ASN295 LEU296 ARG297 TYR298 PRO299 ILE300 ALA301 ASP302 VAL303 SER304 GLY305 GLY306 ILE307 GLY308 MET309 SER310 PRO311 ASN312 TYR313 ARG314 PHE315 ARG316 GLN317 SER318 MET319 TRP320 ILE321 GLY322 ILE323 VAL324 SER325 TYR326 SER327 GLY328 SER329 GLY330 LEU331 ASN332 TRP333 ARG334 VAL335 GLN336 VAL337 ASN338 SER339 ASP340 ILE341 PHE342 ILE343 VAL344 ASN345 ASP346 TYR347 ILE348 HIS349 ILE350 CYS351 LEU352 PRO353 ALA354 PHE355 ASP356 GLY357 PHE358 SER359 ILE360 ALA361 ASP362 GLY363 GLY364 ASP365 LEU366 SER367 LEU368 ASN369 PHE370 VAL371 THR372 GLY373 LEU374 LEU375 PRO376 PRO377 LEU378 LEU379 THR380 GLY381 ASP382 THR383 GLU384 PRO385 ALA386 PHE387 HIS388 ASN389 ASP390 VAL391 VAL392 THR393 TYR394 GLY395 ALA396 GLN397 THR398 VAL399 ALA400 ILE401 GLY402 LEU403 SER404 SER405 GLY406 GLY407 THR408 PRO409 GLN410 TYR411 MET412 SER413 LYS414 ASN415 LEU416 TRP417 VAL418 GLU419 GLN420 TRP421 GLN422 ASP423 GLY424 VAL425 LEU426 ARG427 LEU428 ARG429 VAL430 GLU431 GLY432 GLY433 GLY434 SER435 ILE436 THR437 HIS438 SER439 ASN440 SER441 LYS442 TRP443 PRO444 ALA445 MET446 THR447 VAL448 SER449 TYR450 PRO451 ARG452 SER453 PHE454 THR455
Unit 2 PRO294 ASN295 LEU296 ARG297 TYR298 PRO299 ILE300 ALA301 ASP302 VAL303 SER304 GLY305 GLY306 ILE307 GLY308 MET309 SER310 PRO311 ASN312 TYR313 ARG314 PHE315 ARG316 GLN317 SER318 MET319 TRP320 ILE321 GLY322 ILE323 VAL324 SER325 TYR326 SER327 GLY328 SER329 GLY330 LEU331 ASN332 TRP333 ARG334 VAL335 GLN336 VAL337 ASN338 SER339 ASP340 ILE341 PHE342 ILE343 VAL344 ASN345 ASP346 TYR347 ILE348 HIS349 ILE350 CYS351 LEU352 PRO353 ALA354 PHE355 ASP356 GLY357 PHE358 SER359 ILE360 ALA361 ASP362 GLY363 GLY364 ASP365 LEU366 SER367 LEU368 ASN369 PHE370 VAL371 THR372 GLY373 LEU374 LEU375 PRO376 PRO377 LEU378 LEU379 THR380 GLY381 ASP382 THR383 GLU384 PRO385 ALA386 PHE387 HIS388 ASN389 ASP390 VAL391 VAL392 THR393 TYR394 GLY395 ALA396 GLN397 THR398 VAL399 ALA400 ILE401 GLY402 LEU403 SER404 SER405 GLY406 GLY407 THR408 PRO409 GLN410 TYR411 MET412 SER413 LYS414 ASN415 LEU416 TRP417 VAL418 GLU419 GLN420 TRP421 GLN422 ASP423 GLY424 VAL425 LEU426 ARG427 LEU428 ARG429 VAL430 GLU431 GLY432 GLY433 GLY434 SER435 ILE436 THR437 HIS438 SER439 ASN440 SER441 LYS442 TRP443 PRO444 ALA445 MET446 THR447 VAL448 SER449 TYR450 PRO451 ARG452 SER453 PHE454 THR455
Unit 3 SER293 PRO294 ASN295 LEU296 ARG297 TYR298 PRO299 ILE300 ALA301 ASP302 VAL303 SER304 GLY305 GLY306 ILE307 GLY308 MET309 SER310 PRO311 ASN312 TYR313 ARG314 PHE315 ARG316 GLN317 SER318 MET319 TRP320 ILE321 GLY322 ILE323 VAL324 SER325 TYR326 SER327 GLY328 SER329 GLY330 LEU331 ASN332 TRP333 ARG334 VAL335 GLN336 VAL337 ASN338 SER339 ASP340 ILE341 PHE342 ILE343 VAL344 ASN345 ASP346 TYR347 ILE348 HIS349 ILE350 CYS351 LEU352 PRO353 ALA354 PHE355 ASP356 GLY357 PHE358 SER359 ILE360 ALA361 ASP362 GLY363 GLY364 ASP365 LEU366 SER367 LEU368 ASN369 PHE370 VAL371 THR372 GLY373 LEU374 LEU375 PRO376 PRO377 LEU378 LEU379 THR380 GLY381 ASP382 THR383 GLU384 PRO385 ALA386 PHE387 HIS388 ASN389 ASP390 VAL391 VAL392 THR393 TYR394 GLY395 ALA396 GLN397 THR398 VAL399 ALA400 ILE401 GLY402 LEU403 SER404 SER405 GLY406 GLY407 THR408 PRO409 GLN410 TYR411 MET412 SER413 LYS414 ASN415 LEU416 TRP417 VAL418 GLU419 GLN420 TRP421 GLN422 ASP423 GLY424 VAL425 LEU426 ARG427 LEU428 ARG429 VAL430 GLU431 GLY432 GLY433 GLY434 SER435 ILE436 THR437 HIS438 SER439 ASN440 SER441 LYS442 TRP443 PRO444 ALA445 MET446 THR447 VAL448 SER449 TYR450 PRO451 ARG452 SER453 PHE454
Unit 4 ASN295 LEU296 ARG297 TYR298 PRO299 ILE300 ALA301 ASP302 VAL303 SER304 GLY305 GLY306 ILE307 GLY308 MET309 SER310 PRO311 ASN312 TYR313 ARG314 PHE315 ARG316 GLN317 SER318 MET319 TRP320 ILE321 GLY322 ILE323 VAL324 SER325 TYR326 SER327 GLY328 SER329 GLY330 LEU331 ASN332 TRP333 ARG334 VAL335 GLN336 VAL337 ASN338 SER339 ASP340 ILE341 PHE342 ILE343 VAL344 ASN345 ASP346 TYR347 ILE348 HIS349 ILE350 CYS351 LEU352 PRO353 ALA354 PHE355 ASP356 GLY357 PHE358 SER359 ILE360 ALA361 ASP362 GLY363 GLY364 ASP365 LEU366 SER367 LEU368 ASN369 PHE370 VAL371 THR372 GLY373 LEU374 LEU375 PRO376 PRO377 LEU378 LEU379 THR380 GLY381 ASP382 THR383 GLU384 PRO385 ALA386 PHE387 HIS388 ASN389 ASP390 VAL391 VAL392 THR393 TYR394 GLY395 ALA396 GLN397 THR398 VAL399 ALA400 ILE401 GLY402 LEU403 SER404 SER405 GLY406 GLY407 THR408 PRO409 GLN410 TYR411 MET412 SER413 LYS414 ASN415 LEU416 TRP417 VAL418 GLU419 GLN420 TRP421 GLN422 ASP423 GLY424 VAL425 LEU426 ARG427 LEU428 ARG429 VAL430 GLU431 GLY432 GLY433 GLY434 SER435 ILE436 THR437 HIS438 SER439 ASN440 SER441 LYS442 TRP443 PRO444 ALA445 MET446 THR447 VAL448 SER449 TYR450 PRO451 ARG452 SER453 PHE454
Unit 5 PRO294 ASN295 LEU296 ARG297 TYR298 PRO299 ILE300 ALA301 ASP302 VAL303 SER304 GLY305 GLY306 ILE307 GLY308 MET309 SER310 PRO311 ASN312 TYR313 ARG314 PHE315 ARG316 GLN317 SER318 MET319 TRP320 ILE321 GLY322 ILE323 VAL324 SER325 TYR326 SER327 GLY328 SER329 GLY330 LEU331 ASN332 TRP333 ARG334 VAL335 GLN336 VAL337 ASN338 SER339 ASP340 ILE341 PHE342 ILE343 VAL344 ASN345 ASP346 TYR347 ILE348 HIS349 ILE350 CYS351 LEU352 PRO353 ALA354 PHE355 ASP356 GLY357 PHE358 SER359 ILE360 ALA361 ASP362 GLY363 GLY364 ASP365 LEU366 SER367 LEU368 ASN369 PHE370 VAL371 THR372 GLY373 LEU374 LEU375 PRO376 PRO377 LEU378 LEU379 THR380 GLY381 ASP382 THR383 GLU384 PRO385 ALA386 PHE387 HIS388 ASN389 ASP390 VAL391 VAL392 THR393 TYR394 GLY395 ALA396 GLN397 THR398 VAL399 ALA400 ILE401 GLY402 LEU403 SER404 SER405 GLY406 GLY407 THR408 PRO409 GLN410 TYR411 MET412 SER413 LYS414 ASN415 LEU416 TRP417 VAL418 GLU419 GLN420 TRP421 GLN422 ASP423 GLY424 VAL425 LEU426 ARG427 LEU428 ARG429 VAL430 GLU431 GLY432 GLY433 GLY434 SER435 ILE436 THR437 HIS438 SER439 ASN440 SER441 LYS442 TRP443 PRO444 ALA445 MET446 THR447 VAL448 SER449 TYR450 PRO451 ARG452 SER453 PHE454
Unit 6 PRO294 ASN295 LEU296 ARG297 TYR298 PRO299 ILE300 ALA301 ASP302 VAL303 SER304 GLY305 GLY306 ILE307 GLY308 MET309 SER310 PRO311 ASN312 TYR313 ARG314 PHE315 ARG316 GLN317 SER318 MET319 TRP320 ILE321 GLY322 ILE323 VAL324 SER325 TYR326 SER327 GLY328 SER329 GLY330 LEU331 ASN332 TRP333 ARG334 VAL335 GLN336 VAL337 ASN338 SER339 ASP340 ILE341 PHE342 ILE343 VAL344 ASN345 ASP346 TYR347 ILE348 HIS349 ILE350 CYS351 LEU352 PRO353 ALA354 PHE355 ASP356 GLY357 PHE358 SER359 ILE360 ALA361 ASP362 GLY363 GLY364 ASP365 LEU366 SER367 LEU368 ASN369 PHE370 VAL371 THR372 GLY373 LEU374 LEU375 PRO376 PRO377 LEU378 LEU379 THR380 GLY381 ASP382 THR383 GLU384 PRO385 ALA386 PHE387 HIS388 ASN389 ASP390 VAL391 VAL392 THR393 TYR394 GLY395 ALA396 GLN397 THR398 VAL399 ALA400 ILE401 GLY402 LEU403 SER404 SER405 GLY406 GLY407 THR408 PRO409 GLN410 TYR411 MET412 SER413 LYS414 ASN415 LEU416 TRP417 VAL418 GLU419 GLN420 TRP421 GLN422 ASP423 GLY424 VAL425 LEU426 ARG427 LEU428 ARG429 VAL430 GLU431 GLY432 GLY433 GLY434 SER435 ILE436 THR437 HIS438 SER439 ASN440 SER441 LYS442 TRP443 PRO444 ALA445 MET446 THR447 VAL448 SER449 TYR450 PRO451 ARG452 SER453 PHE454 THR455
Ligands
Unit 7 MG1001
Unit 8 MG1002
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany