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(-) Description

Title :  CRYSTAL STRUCTURE OF THE APSK DOMAIN OF HUMAN PAPSS1 COMPLEXED WITH 2 APS MOLECULES
 
Authors :  N Sekulic, A Lavie
Date :  04 Jan 07  (Deposition) - 10 Apr 07  (Release) - 22 Sep 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Nucleotide Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Sekulic, K. Dietrich, I. Paarmann, S. Ort, M. Konrad, A. Lavie
Elucidation Of The Active Conformation Of The Aps-Kinase Domain Of Human Paps Synthetase 1.
J. Mol. Biol. V. 367 488 2007
PubMed-ID: 17276460  |  Reference-DOI: 10.1016/J.JMB.2007.01.025
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1
    Chains: A, B, C, D, E, F, G, H
    EC Number: 2.7.1.25
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-RB WITH ENGINEERED TEV CUTTING SITE
    Expression System Strain: BL-21 CODON PLUS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: APS KINSE DOMAIN (RESIDUES 1-227)
    Gene: PAPSS1, ATPSK1, PAPSS
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 22)

Asymmetric Unit (2, 22)
No.NameCountTypeFull Name
1ADX16Ligand/IonADENOSINE-5'-PHOSPHOSULFATE
2MG6Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1ADX4Ligand/IonADENOSINE-5'-PHOSPHOSULFATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1ADX4Ligand/IonADENOSINE-5'-PHOSPHOSULFATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1ADX4Ligand/IonADENOSINE-5'-PHOSPHOSULFATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1ADX4Ligand/IonADENOSINE-5'-PHOSPHOSULFATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR B:66 , ADX B:1201 , HOH B:1202 , HOH B:1203 , HOH B:1204 , HOH B:1290BINDING SITE FOR RESIDUE MG B 1002
02AC2SOFTWARETHR C:66 , ADX C:1301 , HOH C:1302 , HOH C:1303 , HOH C:1304 , HOH D:1402BINDING SITE FOR RESIDUE MG C 1003
03AC3SOFTWARETHR D:66 , ADX D:1401 , HOH D:1403 , HOH D:1404 , HOH D:1405 , HOH D:1406BINDING SITE FOR RESIDUE MG D 1004
04AC4SOFTWARETHR E:66 , ADX E:1501 , HOH E:1502 , HOH E:1503 , HOH E:1504BINDING SITE FOR RESIDUE MG E 1005
05AC5SOFTWARETHR F:66 , ADX F:1601 , HOH F:1602 , HOH F:1603 , HOH F:1604 , HOH F:1605BINDING SITE FOR RESIDUE MG F 1006
06AC6SOFTWARETHR H:66 , ADX H:1801 , HOH H:1802 , HOH H:1803 , HOH H:1805 , HOH H:1903BINDING SITE FOR RESIDUE MG H 1008
07AC7SOFTWARESER A:61 , ASP A:89 , ARG A:92 , PHE A:101 , ARG A:106 , ASN A:109 , PHE A:131 , ILE A:132 , SER A:133 , PRO A:134 , LEU A:173 , GLY A:184 , PHE A:185 , THR A:186 , HOH A:1115 , HOH A:1150BINDING SITE FOR RESIDUE ADX A 1100
08AC8SOFTWAREASN A:27 , VAL A:28 , ASP B:89 , ARG B:92 , PHE B:101 , ARG B:106 , ASN B:109 , PHE B:131 , ILE B:132 , SER B:133 , PRO B:134 , LYS B:171 , LEU B:173 , LYS B:183 , GLY B:184 , PHE B:185 , THR B:186 , HOH B:1205 , HOH B:1229 , HOH B:1243 , HOH B:1261 , HOH B:1271 , HOH B:1276 , HOH B:1290BINDING SITE FOR RESIDUE ADX B 1200
09AC9SOFTWAREASP C:89 , ARG C:92 , PHE C:101 , ARG C:106 , ASN C:109 , PHE C:131 , ILE C:132 , SER C:133 , PRO C:134 , LEU C:173 , LYS C:183 , GLY C:184 , PHE C:185 , THR C:186 , HOH C:1302 , HOH C:1333 , HOH C:1374 , HOH C:1385 , HOH C:1389 , THR D:26 , ASN D:27BINDING SITE FOR RESIDUE ADX C 1300
10BC1SOFTWARETHR C:26 , ASN C:27 , GLY D:88 , ASP D:89 , ARG D:92 , PHE D:101 , ARG D:106 , ASN D:109 , PHE D:131 , ILE D:132 , SER D:133 , PRO D:134 , LEU D:173 , LYS D:183 , GLY D:184 , PHE D:185 , THR D:186 , HOH D:1430 , HOH D:1442 , HOH D:1474 , HOH D:1481 , HOH D:1502BINDING SITE FOR RESIDUE ADX D 1400
11BC2SOFTWAREASP E:89 , ARG E:92 , PHE E:101 , ARG E:106 , ASN E:109 , PHE E:131 , ILE E:132 , SER E:133 , PRO E:134 , LEU E:173 , LYS E:183 , GLY E:184 , PHE E:185 , THR E:186 , HOH E:1504 , HOH E:1521 , HOH E:1534 , THR F:26 , ASN F:27BINDING SITE FOR RESIDUE ADX E 1500
12BC3SOFTWARETHR E:26 , ASN E:27 , VAL E:28 , HOH E:1526 , ASP F:89 , ARG F:92 , PHE F:101 , ARG F:106 , ASN F:109 , PHE F:131 , ILE F:132 , SER F:133 , PRO F:134 , LEU F:173 , GLY F:184 , PHE F:185 , THR F:186 , HOH F:1605 , HOH F:1607 , HOH F:1669 , HOH F:1692BINDING SITE FOR RESIDUE ADX F 1600
13BC4SOFTWAREARG G:92 , PHE G:101 , ARG G:106 , ASN G:109 , PHE G:131 , ILE G:132 , SER G:133 , PRO G:134 , LEU G:173 , GLY G:184 , PHE G:185 , THR G:186 , HOH G:1758 , HOH G:1765 , HOH G:1794BINDING SITE FOR RESIDUE ADX G 1700
14BC5SOFTWAREASN G:27 , VAL G:28 , ASP H:89 , ARG H:92 , PHE H:101 , ARG H:106 , ASN H:109 , PHE H:131 , ILE H:132 , SER H:133 , PRO H:134 , LEU H:173 , LYS H:183 , GLY H:184 , PHE H:185 , THR H:186 , HOH H:1803 , HOH H:1804 , HOH H:1835 , HOH H:1901BINDING SITE FOR RESIDUE ADX H 1800
15BC6SOFTWAREGLY A:62 , ALA A:63 , GLY A:64 , LYS A:65 , THR A:66 , THR A:67 , ARG A:168 , THR A:204 , CYS A:207 , VAL A:209 , HOH A:1190 , HOH A:1206BINDING SITE FOR RESIDUE ADX A 1101
16BC7SOFTWARELEU B:60 , GLY B:62 , ALA B:63 , GLY B:64 , LYS B:65 , THR B:66 , THR B:67 , ARG B:168 , THR B:204 , CYS B:207 , ASP B:208 , VAL B:209 , CYS B:212 , MG B:1002 , HOH B:1202 , HOH B:1211 , HOH B:1283 , HOH B:1290BINDING SITE FOR RESIDUE ADX B 1201
17BC8SOFTWARELEU C:60 , GLY C:62 , ALA C:63 , GLY C:64 , LYS C:65 , THR C:66 , THR C:67 , ARG C:168 , THR C:204 , CYS C:207 , ASP C:208 , VAL C:209 , CYS C:212 , MG C:1003 , HOH C:1347 , HOH C:1364 , HOH C:1390 , HOH D:1402BINDING SITE FOR RESIDUE ADX C 1301
18BC9SOFTWARELEU D:60 , GLY D:62 , ALA D:63 , GLY D:64 , LYS D:65 , THR D:66 , THR D:67 , ARG D:168 , THR D:204 , CYS D:207 , ASP D:208 , VAL D:209 , CYS D:212 , MG D:1004 , HOH D:1404 , HOH D:1406 , HOH D:1442 , HOH D:1483BINDING SITE FOR RESIDUE ADX D 1401
19CC1SOFTWARELEU E:60 , GLY E:62 , ALA E:63 , GLY E:64 , LYS E:65 , THR E:66 , THR E:67 , ARG E:168 , VAL E:170 , THR E:204 , CYS E:207 , CYS E:212 , MG E:1005 , HOH E:1502 , HOH E:1504 , HOH E:1582 , HOH E:1591BINDING SITE FOR RESIDUE ADX E 1501
20CC2SOFTWARELEU F:60 , GLY F:62 , ALA F:63 , GLY F:64 , LYS F:65 , THR F:66 , THR F:67 , ARG F:168 , THR F:204 , CYS F:207 , ASP F:208 , VAL F:209 , CYS F:212 , MG F:1006 , HOH F:1604 , HOH F:1605 , HOH F:1634BINDING SITE FOR RESIDUE ADX F 1601
21CC3SOFTWARELEU G:60 , GLY G:62 , ALA G:63 , GLY G:64 , LYS G:65 , THR G:66 , THR G:67 , ARG G:168 , VAL G:170 , THR G:204 , CYS G:207 , ASP G:208 , VAL G:209 , CYS G:212 , HOH G:1702 , HOH G:1703 , HOH G:1704 , HOH G:1784BINDING SITE FOR RESIDUE ADX G 1701
22CC4SOFTWARESER H:61 , GLY H:62 , ALA H:63 , GLY H:64 , LYS H:65 , THR H:66 , THR H:67 , ARG H:168 , THR H:204 , CYS H:207 , ASP H:208 , VAL H:209 , CYS H:212 , MG H:1008 , HOH H:1803 , HOH H:1805 , HOH H:1812BINDING SITE FOR RESIDUE ADX H 1801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OFW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OFW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OFW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OFW)

(-) Exons   (5, 40)

Asymmetric Unit (5, 40)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002651741aENSE00000935008chr4:108641608-108641276333PAPS1_HUMAN1-20200--
1.3ENST000002651743ENSE00000935007chr4:108622441-108622327115PAPS1_HUMAN21-59398A:27-59
B:35-59
C:24-59
D:24-59
E:25-59
F:24-59
G:27-59
H:35-59		33
25
36
36
35
36
33
25
1.4cENST000002651744cENSE00000736237chr4:108615162-108614927236PAPS1_HUMAN59-137798A:59-137
B:59-137
C:59-137
D:59-137
E:59-137
F:59-137
G:59-137
H:59-137		79
79
79
79
79
79
79
79
1.5cENST000002651745cENSE00000736234chr4:108608333-108608195139PAPS1_HUMAN138-184478A:138-184 (gaps)
B:138-184
C:138-184
D:138-184
E:138-184
F:138-184
G:138-184
H:138-184		47
47
47
47
47
47
47
47
1.6ENST000002651746ENSE00000736231chr4:108603289-108603171119PAPS1_HUMAN184-223408A:184-223
B:184-223
C:184-223
D:184-223
E:184-223
F:184-223
G:184-223
H:184-223		40
40
40
40
40
40
40
40
1.7bENST000002651747bENSE00000841651chr4:108581228-108581115114PAPS1_HUMAN224-261388A:224-227
B:224-227
C:224-227
D:224-227
E:224-227
F:224-227
G:224-227
H:224-227		4
4
4
4
4
4
4
4
1.8ENST000002651748ENSE00000841650chr4:108578163-108578052112PAPS1_HUMAN262-299380--
1.9ENST000002651749ENSE00000841649chr4:108576056-108575851206PAPS1_HUMAN299-367690--
1.10bENST0000026517410bENSE00001217423chr4:108574782-108574647136PAPS1_HUMAN368-413460--
1.11ENST0000026517411ENSE00001217417chr4:108566226-108565958269PAPS1_HUMAN413-502900--
1.12aENST0000026517412aENSE00001217412chr4:108553016-108552787230PAPS1_HUMAN503-579770--
1.13ENST0000026517413ENSE00001217468chr4:108535543-108534822722PAPS1_HUMAN579-624460--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
 aligned with PAPS1_HUMAN | O43252 from UniProtKB/Swiss-Prot  Length:624

    Alignment length:201
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226 
          PAPS1_HUMAN    27 NVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVP 227
               SCOP domains d2ofwa_ A: automated matches                                                                                                                                                                              SCOP domains
               CATH domains 2ofwA00 A:27-227 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhh.......eeeeee.....hhhhhhhhhhhhhhh....eeeeehhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh...eeeeee..hhhhhhhhh-.hhhhhhhh....................eee.....hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: A:27-59           ------------------------------------------------------------------------------Exon 1.5c  PDB: A:138-184 (gaps)               ---------------------------------------1.7b Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.4c  PDB: A:59-137 UniProt: 59-137                                       ----------------------------------------------Exon 1.6  PDB: A:184-223                ---- Transcript 1 (2)
                 2ofw A  27 NVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRD-KGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLNERDILP 227
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166  | |  176       186       196       206       216       226 
                                                                                                                                                                        169 |                                                        
                                                                                                                                                                          171                                                        


Chain B from PDB  Type:PROTEIN  Length:193
 aligned with PAPS1_HUMAN | O43252 from UniProtKB/Swiss-Prot  Length:624

    Alignment length:193
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224   
          PAPS1_HUMAN    35 VSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVP 227
               SCOP domains d2ofwb_ B: automated matches                                                                                                                                                                      SCOP domains
               CATH domains 2ofwB00 B:35-227 P-loop containing nucleotide triphosphate hydrolases                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..........eeeeee.....hhhhhhhhhhhhhhhh...eeeeehhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh....eeeeee..hhhhhhhhh..hhhhhhhh....................eee.....hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: B:35-59   ------------------------------------------------------------------------------Exon 1.5c  PDB: B:138-184 UniProt: 138-184     ---------------------------------------1.7b Transcript 1 (1)
           Transcript 1 (2) ------------------------Exon 1.4c  PDB: B:59-137 UniProt: 59-137                                       ----------------------------------------------Exon 1.6  PDB: B:184-223                ---- Transcript 1 (2)
                 2ofw B  35 VSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLNERDILP 227
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224   


Chain C from PDB  Type:PROTEIN  Length:204
 aligned with PAPS1_HUMAN | O43252 from UniProtKB/Swiss-Prot  Length:624

    Alignment length:204
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
          PAPS1_HUMAN    24 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVP 227
               SCOP domains d2ofwc_ C: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains 2ofwC00 C:24-227 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhhh.......eeeeee.....hhhhhhhhhhhhhhhh...eeeeehhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhh..hhhhhhhh....................eeee....hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.3  PDB: C:24-59 [INCOMPLETE] ------------------------------------------------------------------------------Exon 1.5c  PDB: C:138-184 UniProt: 138-184     ---------------------------------------1.7b Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.4c  PDB: C:59-137 UniProt: 59-137                                       ----------------------------------------------Exon 1.6  PDB: C:184-223                ---- Transcript 1 (2)
                 2ofw C  24 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLNERDILP 227
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    


Chain D from PDB  Type:PROTEIN  Length:204
 aligned with PAPS1_HUMAN | O43252 from UniProtKB/Swiss-Prot  Length:624

    Alignment length:204
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
          PAPS1_HUMAN    24 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVP 227
               SCOP domains d2ofwd_ D: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains 2ofwD00 D:24-227 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhhh.......eeeeee.....hhhhhhhhhhhhhhh....eeeeehhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhh....hhhhhhhh....................eeee....hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.3  PDB: D:24-59 [INCOMPLETE] ------------------------------------------------------------------------------Exon 1.5c  PDB: D:138-184 UniProt: 138-184     ---------------------------------------1.7b Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.4c  PDB: D:59-137 UniProt: 59-137                                       ----------------------------------------------Exon 1.6  PDB: D:184-223                ---- Transcript 1 (2)
                 2ofw D  24 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLNERDILP 227
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    


Chain E from PDB  Type:PROTEIN  Length:203
 aligned with PAPS1_HUMAN | O43252 from UniProtKB/Swiss-Prot  Length:624

    Alignment length:203
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224   
          PAPS1_HUMAN    25 ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVP 227
               SCOP domains d2ofwe_ E: automated matches                                                                                                                                                                                SCOP domains
               CATH domains 2ofwE00 E:25-227 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhh.......eeeeee.....hhhhhhhhhhhhhhhh...eeeeehhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhh..hhhhhhhh....................eeee....hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: E:25-59 [INCOMPLETE]------------------------------------------------------------------------------Exon 1.5c  PDB: E:138-184 UniProt: 138-184     ---------------------------------------1.7b Transcript 1 (1)
           Transcript 1 (2) ----------------------------------Exon 1.4c  PDB: E:59-137 UniProt: 59-137                                       ----------------------------------------------Exon 1.6  PDB: E:184-223                ---- Transcript 1 (2)
                 2ofw E  25 ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLNERDILP 227
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224   


Chain F from PDB  Type:PROTEIN  Length:204
 aligned with PAPS1_HUMAN | O43252 from UniProtKB/Swiss-Prot  Length:624

    Alignment length:204
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
          PAPS1_HUMAN    24 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVP 227
               SCOP domains d2ofwf_ F: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains 2ofwF00 F:24-227 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhhh.......eeeeee.....hhhhhhhhhhhhhhhh...eeeeehhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhh....eeeeee..hhhhhhhh...hhhhhhhh....................eee.....hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.3  PDB: F:24-59 [INCOMPLETE] ------------------------------------------------------------------------------Exon 1.5c  PDB: F:138-184 UniProt: 138-184     ---------------------------------------1.7b Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.4c  PDB: F:59-137 UniProt: 59-137                                       ----------------------------------------------Exon 1.6  PDB: F:184-223                ---- Transcript 1 (2)
                 2ofw F  24 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLNERDILP 227
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    


Chain G from PDB  Type:PROTEIN  Length:201
 aligned with PAPS1_HUMAN | O43252 from UniProtKB/Swiss-Prot  Length:624

    Alignment length:201
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226 
          PAPS1_HUMAN    27 NVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVP 227
               SCOP domains d2ofwg_ G: automated matches                                                                                                                                                                              SCOP domains
               CATH domains 2ofwG00 G:27-227 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh...........eeeeee.....hhhhhhhhhhhhhhhh...eeeee..............hhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhh..hhhhhhhh....................eeee....hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: G:27-59           ------------------------------------------------------------------------------Exon 1.5c  PDB: G:138-184 UniProt: 138-184     ---------------------------------------1.7b Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.4c  PDB: G:59-137 UniProt: 59-137                                       ----------------------------------------------Exon 1.6  PDB: G:184-223                ---- Transcript 1 (2)
                 2ofw G  27 NVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLNERDILP 227
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226 


Chain H from PDB  Type:PROTEIN  Length:193
 aligned with PAPS1_HUMAN | O43252 from UniProtKB/Swiss-Prot  Length:624

    Alignment length:193
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224   
          PAPS1_HUMAN    35 VSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVP 227
               SCOP domains d2ofwh_ H: automated matches                                                                                                                                                                      SCOP domains
               CATH domains 2ofwH00 H:35-227 P-loop containing nucleotide triphosphate hydrolases                                                                                                                             CATH domains
           Pfam domains (1) ----------------APS_kinase-2ofwH01 H:51-209                                                                                                                                    ---------------P-- Pfam domains (1)
           Pfam domains (2) ----------------APS_kinase-2ofwH02 H:51-209                                                                                                                                    ---------------P-- Pfam domains (2)
           Pfam domains (3) ----------------APS_kinase-2ofwH03 H:51-209                                                                                                                                    ---------------P-- Pfam domains (3)
           Pfam domains (4) ----------------APS_kinase-2ofwH04 H:51-209                                                                                                                                    ---------------P-- Pfam domains (4)
           Pfam domains (5) ----------------APS_kinase-2ofwH05 H:51-209                                                                                                                                    ---------------P-- Pfam domains (5)
           Pfam domains (6) ----------------APS_kinase-2ofwH06 H:51-209                                                                                                                                    ---------------P-- Pfam domains (6)
           Pfam domains (7) ----------------APS_kinase-2ofwH07 H:51-209                                                                                                                                    ---------------P-- Pfam domains (7)
           Pfam domains (8) ----------------APS_kinase-2ofwH08 H:51-209                                                                                                                                    ---------------P-- Pfam domains (8)
         Sec.struct. author .hhhhhh...........eeeeee.....hhhhhhhhhhhhhhh....eeeeehhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh...eeeeee..hhhhhhhhh..hhhhhhhh....................eee.....hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: H:35-59   ------------------------------------------------------------------------------Exon 1.5c  PDB: H:138-184 UniProt: 138-184     ---------------------------------------1.7b Transcript 1 (1)
           Transcript 1 (2) ------------------------Exon 1.4c  PDB: H:59-137 UniProt: 59-137                                       ----------------------------------------------Exon 1.6  PDB: H:184-223                ---- Transcript 1 (2)
                 2ofw H  35 VSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLNERDILP 227
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 16)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)
(-)
Clan: PUA (42)
(-)
Family: PUA_2 (11)
(-)
Homo sapiens (Human) (6)
2aPUA_2-2ofwH09H:225-225
2bPUA_2-2ofwH10H:225-225
2cPUA_2-2ofwH11H:225-225
2dPUA_2-2ofwH12H:225-225
2ePUA_2-2ofwH13H:225-225
2fPUA_2-2ofwH14H:225-225
2gPUA_2-2ofwH15H:225-225
2hPUA_2-2ofwH16H:225-225

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (PAPS1_HUMAN | O43252)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004020    adenylylsulfate kinase activity    Catalysis of the reaction: ATP + adenylylsulfate = ADP + 3'-phosphoadenosine 5'-phosphosulfate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0004781    sulfate adenylyltransferase (ATP) activity    Catalysis of the reaction: ATP + sulfate = diphosphate + adenylylsulfate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0050428    3'-phosphoadenosine 5'-phosphosulfate biosynthetic process    The chemical reactions and pathways resulting in the formation of 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0001501    skeletal system development    The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
    GO:0000103    sulfate assimilation    The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  2ofw
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAPS1_HUMAN | O43252: 1x6v 1xjq 1xnj 2ofx 2pey 2pez 2qjf

(-) Related Entries Specified in the PDB File

2ofw