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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE APSK DOMAIN OF HUMAN PAPSS1 COMPLEX APS MOLECULES
Keywords NUCLEOTIDE KINASE, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2OFW     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  A 200 1554 0
2  Protein   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  B 193 1497 0
3  Protein   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  C 204 1583 0
4  Protein   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  D 204 1583 0
5  Protein   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  E 203 1562 0
6  Protein   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  F 204 1573 0
7  Protein   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  G 201 1553 0
8  Protein   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  H 193 1492 0
9  Ligand   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  A 2 0 54
10  Ligand   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  B 3 0 55
11  Ligand   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  C 3 0 55
12  Ligand   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  D 3 0 55
13  Ligand   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  E 3 0 55
14  Ligand   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  F 3 0 55
15  Ligand   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  G 2 0 54
16  Ligand   APS KINASE DOMAIN OF THE PAPS SYNTHETASE 1  H 3 0 55
17 Water     832 0 832
total       2456 12397 1270

Proteins
Unit 1 ASN27 VAL28 THR29 TYR30 GLN31 ALA32 HIS33 HIS34 VAL35 SER36 ARG37 ASN38 LYS39 ARG40 GLY41 GLN42 VAL43 VAL44 GLY45 THR46 ARG47 GLY48 GLY49 PHE50 ARG51 GLY52 CYS53 THR54 ILE55 TRP56 LEU57 THR58 GLY59 LEU60 SER61 GLY62 ALA63 GLY64 LYS65 THR66 THR67 VAL68 SER69 MET70 ALA71 LEU72 GLU73 GLU74 TYR75 LEU76 VAL77 CYS78 HIS79 GLY80 ILE81 PRO82 CYS83 TYR84 THR85 LEU86 ASP87 GLY88 ASP89 ASN90 ILE91 ARG92 GLN93 GLY94 LEU95 ASN96 LYS97 ASN98 LEU99 GLY100 PHE101 SER102 PRO103 GLU104 ASP105 ARG106 GLU107 GLU108 ASN109 VAL110 ARG111 ARG112 ILE113 ALA114 GLU115 VAL116 ALA117 LYS118 LEU119 PHE120 ALA121 ASP122 ALA123 GLY124 LEU125 VAL126 CYS127 ILE128 THR129 SER130 PHE131 ILE132 SER133 PRO134 TYR135 THR136 GLN137 ASP138 ARG139 ASN140 ASN141 ALA142 ARG143 GLN144 ILE145 HIS146 GLU147 GLY148 ALA149 SER150 LEU151 PRO152 PHE153 PHE154 GLU155 VAL156 PHE157 VAL158 ASP159 ALA160 PRO161 LEU162 HIS163 VAL164 CYS165 GLU166 GLN167 ARG168 ASP169 LYS171 GLY172 LEU173 TYR174 LYS175 LYS176 ALA177 ARG178 ALA179 GLY180 GLU181 ILE182 LYS183 GLY184 PHE185 THR186 GLY187 ILE188 ASP189 SER190 GLU191 TYR192 GLU193 LYS194 PRO195 GLU196 ALA197 PRO198 GLU199 LEU200 VAL201 LEU202 LYS203 THR204 ASP205 SER206 CYS207 ASP208 VAL209 ASN210 ASP211 CYS212 VAL213 GLN214 GLN215 VAL216 VAL217 GLU218 LEU219 LEU220 ASN221 GLU222 ARG223 ASP224 ILE225 LEU226 PRO227
Unit 2 VAL35 SER36 ARG37 ASN38 LYS39 ARG40 GLY41 GLN42 VAL43 VAL44 GLY45 THR46 ARG47 GLY48 GLY49 PHE50 ARG51 GLY52 CYS53 THR54 ILE55 TRP56 LEU57 THR58 GLY59 LEU60 SER61 GLY62 ALA63 GLY64 LYS65 THR66 THR67 VAL68 SER69 MET70 ALA71 LEU72 GLU73 GLU74 TYR75 LEU76 VAL77 CYS78 HIS79 GLY80 ILE81 PRO82 CYS83 TYR84 THR85 LEU86 ASP87 GLY88 ASP89 ASN90 ILE91 ARG92 GLN93 GLY94 LEU95 ASN96 LYS97 ASN98 LEU99 GLY100 PHE101 SER102 PRO103 GLU104 ASP105 ARG106 GLU107 GLU108 ASN109 VAL110 ARG111 ARG112 ILE113 ALA114 GLU115 VAL116 ALA117 LYS118 LEU119 PHE120 ALA121 ASP122 ALA123 GLY124 LEU125 VAL126 CYS127 ILE128 THR129 SER130 PHE131 ILE132 SER133 PRO134 TYR135 THR136 GLN137 ASP138 ARG139 ASN140 ASN141 ALA142 ARG143 GLN144 ILE145 HIS146 GLU147 GLY148 ALA149 SER150 LEU151 PRO152 PHE153 PHE154 GLU155 VAL156 PHE157 VAL158 ASP159 ALA160 PRO161 LEU162 HIS163 VAL164 CYS165 GLU166 GLN167 ARG168 ASP169 VAL170 LYS171 GLY172 LEU173 TYR174 LYS175 LYS176 ALA177 ARG178 ALA179 GLY180 GLU181 ILE182 LYS183 GLY184 PHE185 THR186 GLY187 ILE188 ASP189 SER190 GLU191 TYR192 GLU193 LYS194 PRO195 GLU196 ALA197 PRO198 GLU199 LEU200 VAL201 LEU202 LYS203 THR204 ASP205 SER206 CYS207 ASP208 VAL209 ASN210 ASP211 CYS212 VAL213 GLN214 GLN215 VAL216 VAL217 GLU218 LEU219 LEU220 ASN221 GLU222 ARG223 ASP224 ILE225 LEU226 PRO227
Unit 3 ARG24 ALA25 THR26 ASN27 VAL28 THR29 TYR30 GLN31 ALA32 HIS33 HIS34 VAL35 SER36 ARG37 ASN38 LYS39 ARG40 GLY41 GLN42 VAL43 VAL44 GLY45 THR46 ARG47 GLY48 GLY49 PHE50 ARG51 GLY52 CYS53 THR54 ILE55 TRP56 LEU57 THR58 GLY59 LEU60 SER61 GLY62 ALA63 GLY64 LYS65 THR66 THR67 VAL68 SER69 MET70 ALA71 LEU72 GLU73 GLU74 TYR75 LEU76 VAL77 CYS78 HIS79 GLY80 ILE81 PRO82 CYS83 TYR84 THR85 LEU86 ASP87 GLY88 ASP89 ASN90 ILE91 ARG92 GLN93 GLY94 LEU95 ASN96 LYS97 ASN98 LEU99 GLY100 PHE101 SER102 PRO103 GLU104 ASP105 ARG106 GLU107 GLU108 ASN109 VAL110 ARG111 ARG112 ILE113 ALA114 GLU115 VAL116 ALA117 LYS118 LEU119 PHE120 ALA121 ASP122 ALA123 GLY124 LEU125 VAL126 CYS127 ILE128 THR129 SER130 PHE131 ILE132 SER133 PRO134 TYR135 THR136 GLN137 ASP138 ARG139 ASN140 ASN141 ALA142 ARG143 GLN144 ILE145 HIS146 GLU147 GLY148 ALA149 SER150 LEU151 PRO152 PHE153 PHE154 GLU155 VAL156 PHE157 VAL158 ASP159 ALA160 PRO161 LEU162 HIS163 VAL164 CYS165 GLU166 GLN167 ARG168 ASP169 VAL170 LYS171 GLY172 LEU173 TYR174 LYS175 LYS176 ALA177 ARG178 ALA179 GLY180 GLU181 ILE182 LYS183 GLY184 PHE185 THR186 GLY187 ILE188 ASP189 SER190 GLU191 TYR192 GLU193 LYS194 PRO195 GLU196 ALA197 PRO198 GLU199 LEU200 VAL201 LEU202 LYS203 THR204 ASP205 SER206 CYS207 ASP208 VAL209 ASN210 ASP211 CYS212 VAL213 GLN214 GLN215 VAL216 VAL217 GLU218 LEU219 LEU220 ASN221 GLU222 ARG223 ASP224 ILE225 LEU226 PRO227
Unit 4 ARG24 ALA25 THR26 ASN27 VAL28 THR29 TYR30 GLN31 ALA32 HIS33 HIS34 VAL35 SER36 ARG37 ASN38 LYS39 ARG40 GLY41 GLN42 VAL43 VAL44 GLY45 THR46 ARG47 GLY48 GLY49 PHE50 ARG51 GLY52 CYS53 THR54 ILE55 TRP56 LEU57 THR58 GLY59 LEU60 SER61 GLY62 ALA63 GLY64 LYS65 THR66 THR67 VAL68 SER69 MET70 ALA71 LEU72 GLU73 GLU74 TYR75 LEU76 VAL77 CYS78 HIS79 GLY80 ILE81 PRO82 CYS83 TYR84 THR85 LEU86 ASP87 GLY88 ASP89 ASN90 ILE91 ARG92 GLN93 GLY94 LEU95 ASN96 LYS97 ASN98 LEU99 GLY100 PHE101 SER102 PRO103 GLU104 ASP105 ARG106 GLU107 GLU108 ASN109 VAL110 ARG111 ARG112 ILE113 ALA114 GLU115 VAL116 ALA117 LYS118 LEU119 PHE120 ALA121 ASP122 ALA123 GLY124 LEU125 VAL126 CYS127 ILE128 THR129 SER130 PHE131 ILE132 SER133 PRO134 TYR135 THR136 GLN137 ASP138 ARG139 ASN140 ASN141 ALA142 ARG143 GLN144 ILE145 HIS146 GLU147 GLY148 ALA149 SER150 LEU151 PRO152 PHE153 PHE154 GLU155 VAL156 PHE157 VAL158 ASP159 ALA160 PRO161 LEU162 HIS163 VAL164 CYS165 GLU166 GLN167 ARG168 ASP169 VAL170 LYS171 GLY172 LEU173 TYR174 LYS175 LYS176 ALA177 ARG178 ALA179 GLY180 GLU181 ILE182 LYS183 GLY184 PHE185 THR186 GLY187 ILE188 ASP189 SER190 GLU191 TYR192 GLU193 LYS194 PRO195 GLU196 ALA197 PRO198 GLU199 LEU200 VAL201 LEU202 LYS203 THR204 ASP205 SER206 CYS207 ASP208 VAL209 ASN210 ASP211 CYS212 VAL213 GLN214 GLN215 VAL216 VAL217 GLU218 LEU219 LEU220 ASN221 GLU222 ARG223 ASP224 ILE225 LEU226 PRO227
Unit 5 ALA25 THR26 ASN27 VAL28 THR29 TYR30 GLN31 ALA32 HIS33 HIS34 VAL35 SER36 ARG37 ASN38 LYS39 ARG40 GLY41 GLN42 VAL43 VAL44 GLY45 THR46 ARG47 GLY48 GLY49 PHE50 ARG51 GLY52 CYS53 THR54 ILE55 TRP56 LEU57 THR58 GLY59 LEU60 SER61 GLY62 ALA63 GLY64 LYS65 THR66 THR67 VAL68 SER69 MET70 ALA71 LEU72 GLU73 GLU74 TYR75 LEU76 VAL77 CYS78 HIS79 GLY80 ILE81 PRO82 CYS83 TYR84 THR85 LEU86 ASP87 GLY88 ASP89 ASN90 ILE91 ARG92 GLN93 GLY94 LEU95 ASN96 LYS97 ASN98 LEU99 GLY100 PHE101 SER102 PRO103 GLU104 ASP105 ARG106 GLU107 GLU108 ASN109 VAL110 ARG111 ARG112 ILE113 ALA114 GLU115 VAL116 ALA117 LYS118 LEU119 PHE120 ALA121 ASP122 ALA123 GLY124 LEU125 VAL126 CYS127 ILE128 THR129 SER130 PHE131 ILE132 SER133 PRO134 TYR135 THR136 GLN137 ASP138 ARG139 ASN140 ASN141 ALA142 ARG143 GLN144 ILE145 HIS146 GLU147 GLY148 ALA149 SER150 LEU151 PRO152 PHE153 PHE154 GLU155 VAL156 PHE157 VAL158 ASP159 ALA160 PRO161 LEU162 HIS163 VAL164 CYS165 GLU166 GLN167 ARG168 ASP169 VAL170 LYS171 GLY172 LEU173 TYR174 LYS175 LYS176 ALA177 ARG178 ALA179 GLY180 GLU181 ILE182 LYS183 GLY184 PHE185 THR186 GLY187 ILE188 ASP189 SER190 GLU191 TYR192 GLU193 LYS194 PRO195 GLU196 ALA197 PRO198 GLU199 LEU200 VAL201 LEU202 LYS203 THR204 ASP205 SER206 CYS207 ASP208 VAL209 ASN210 ASP211 CYS212 VAL213 GLN214 GLN215 VAL216 VAL217 GLU218 LEU219 LEU220 ASN221 GLU222 ARG223 ASP224 ILE225 LEU226 PRO227
Unit 6 ARG24 ALA25 THR26 ASN27 VAL28 THR29 TYR30 GLN31 ALA32 HIS33 HIS34 VAL35 SER36 ARG37 ASN38 LYS39 ARG40 GLY41 GLN42 VAL43 VAL44 GLY45 THR46 ARG47 GLY48 GLY49 PHE50 ARG51 GLY52 CYS53 THR54 ILE55 TRP56 LEU57 THR58 GLY59 LEU60 SER61 GLY62 ALA63 GLY64 LYS65 THR66 THR67 VAL68 SER69 MET70 ALA71 LEU72 GLU73 GLU74 TYR75 LEU76 VAL77 CYS78 HIS79 GLY80 ILE81 PRO82 CYS83 TYR84 THR85 LEU86 ASP87 GLY88 ASP89 ASN90 ILE91 ARG92 GLN93 GLY94 LEU95 ASN96 LYS97 ASN98 LEU99 GLY100 PHE101 SER102 PRO103 GLU104 ASP105 ARG106 GLU107 GLU108 ASN109 VAL110 ARG111 ARG112 ILE113 ALA114 GLU115 VAL116 ALA117 LYS118 LEU119 PHE120 ALA121 ASP122 ALA123 GLY124 LEU125 VAL126 CYS127 ILE128 THR129 SER130 PHE131 ILE132 SER133 PRO134 TYR135 THR136 GLN137 ASP138 ARG139 ASN140 ASN141 ALA142 ARG143 GLN144 ILE145 HIS146 GLU147 GLY148 ALA149 SER150 LEU151 PRO152 PHE153 PHE154 GLU155 VAL156 PHE157 VAL158 ASP159 ALA160 PRO161 LEU162 HIS163 VAL164 CYS165 GLU166 GLN167 ARG168 ASP169 VAL170 LYS171 GLY172 LEU173 TYR174 LYS175 LYS176 ALA177 ARG178 ALA179 GLY180 GLU181 ILE182 LYS183 GLY184 PHE185 THR186 GLY187 ILE188 ASP189 SER190 GLU191 TYR192 GLU193 LYS194 PRO195 GLU196 ALA197 PRO198 GLU199 LEU200 VAL201 LEU202 LYS203 THR204 ASP205 SER206 CYS207 ASP208 VAL209 ASN210 ASP211 CYS212 VAL213 GLN214 GLN215 VAL216 VAL217 GLU218 LEU219 LEU220 ASN221 GLU222 ARG223 ASP224 ILE225 LEU226 PRO227
Unit 7 ASN27 VAL28 THR29 TYR30 GLN31 ALA32 HIS33 HIS34 VAL35 SER36 ARG37 ASN38 LYS39 ARG40 GLY41 GLN42 VAL43 VAL44 GLY45 THR46 ARG47 GLY48 GLY49 PHE50 ARG51 GLY52 CYS53 THR54 ILE55 TRP56 LEU57 THR58 GLY59 LEU60 SER61 GLY62 ALA63 GLY64 LYS65 THR66 THR67 VAL68 SER69 MET70 ALA71 LEU72 GLU73 GLU74 TYR75 LEU76 VAL77 CYS78 HIS79 GLY80 ILE81 PRO82 CYS83 TYR84 THR85 LEU86 ASP87 GLY88 ASP89 ASN90 ILE91 ARG92 GLN93 GLY94 LEU95 ASN96 LYS97 ASN98 LEU99 GLY100 PHE101 SER102 PRO103 GLU104 ASP105 ARG106 GLU107 GLU108 ASN109 VAL110 ARG111 ARG112 ILE113 ALA114 GLU115 VAL116 ALA117 LYS118 LEU119 PHE120 ALA121 ASP122 ALA123 GLY124 LEU125 VAL126 CYS127 ILE128 THR129 SER130 PHE131 ILE132 SER133 PRO134 TYR135 THR136 GLN137 ASP138 ARG139 ASN140 ASN141 ALA142 ARG143 GLN144 ILE145 HIS146 GLU147 GLY148 ALA149 SER150 LEU151 PRO152 PHE153 PHE154 GLU155 VAL156 PHE157 VAL158 ASP159 ALA160 PRO161 LEU162 HIS163 VAL164 CYS165 GLU166 GLN167 ARG168 ASP169 VAL170 LYS171 GLY172 LEU173 TYR174 LYS175 LYS176 ALA177 ARG178 ALA179 GLY180 GLU181 ILE182 LYS183 GLY184 PHE185 THR186 GLY187 ILE188 ASP189 SER190 GLU191 TYR192 GLU193 LYS194 PRO195 GLU196 ALA197 PRO198 GLU199 LEU200 VAL201 LEU202 LYS203 THR204 ASP205 SER206 CYS207 ASP208 VAL209 ASN210 ASP211 CYS212 VAL213 GLN214 GLN215 VAL216 VAL217 GLU218 LEU219 LEU220 ASN221 GLU222 ARG223 ASP224 ILE225 LEU226 PRO227
Unit 8 VAL35 SER36 ARG37 ASN38 LYS39 ARG40 GLY41 GLN42 VAL43 VAL44 GLY45 THR46 ARG47 GLY48 GLY49 PHE50 ARG51 GLY52 CYS53 THR54 ILE55 TRP56 LEU57 THR58 GLY59 LEU60 SER61 GLY62 ALA63 GLY64 LYS65 THR66 THR67 VAL68 SER69 MET70 ALA71 LEU72 GLU73 GLU74 TYR75 LEU76 VAL77 CYS78 HIS79 GLY80 ILE81 PRO82 CYS83 TYR84 THR85 LEU86 ASP87 GLY88 ASP89 ASN90 ILE91 ARG92 GLN93 GLY94 LEU95 ASN96 LYS97 ASN98 LEU99 GLY100 PHE101 SER102 PRO103 GLU104 ASP105 ARG106 GLU107 GLU108 ASN109 VAL110 ARG111 ARG112 ILE113 ALA114 GLU115 VAL116 ALA117 LYS118 LEU119 PHE120 ALA121 ASP122 ALA123 GLY124 LEU125 VAL126 CYS127 ILE128 THR129 SER130 PHE131 ILE132 SER133 PRO134 TYR135 THR136 GLN137 ASP138 ARG139 ASN140 ASN141 ALA142 ARG143 GLN144 ILE145 HIS146 GLU147 GLY148 ALA149 SER150 LEU151 PRO152 PHE153 PHE154 GLU155 VAL156 PHE157 VAL158 ASP159 ALA160 PRO161 LEU162 HIS163 VAL164 CYS165 GLU166 GLN167 ARG168 ASP169 VAL170 LYS171 GLY172 LEU173 TYR174 LYS175 LYS176 ALA177 ARG178 ALA179 GLY180 GLU181 ILE182 LYS183 GLY184 PHE185 THR186 GLY187 ILE188 ASP189 SER190 GLU191 TYR192 GLU193 LYS194 PRO195 GLU196 ALA197 PRO198 GLU199 LEU200 VAL201 LEU202 LYS203 THR204 ASP205 SER206 CYS207 ASP208 VAL209 ASN210 ASP211 CYS212 VAL213 GLN214 GLN215 VAL216 VAL217 GLU218 LEU219 LEU220 ASN221 GLU222 ARG223 ASP224 ILE225 LEU226 PRO227

Ligands
Unit 9 ADX1100 ADX1101
Unit 10 MG1002 ADX1200 ADX1201
Unit 11 MG1003 ADX1300 ADX1301
Unit 12 MG1004 ADX1400 ADX1401
Unit 13 MG1005 ADX1500 ADX1501
Unit 14 MG1006 ADX1600 ADX1601
Unit 15 ADX1700 ADX1701
Unit 16 MG1008 ADX1800 ADX1801

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany