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(-) Description

Title :  P75NTR DD:RHOGDI
 
Authors :  Z. Lin, C. F. Ibanez
Date :  30 Sep 15  (Deposition) - 23 Dec 15  (Release) - 23 Dec 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
NMR Structure *:  A,B  (1x)
Keywords :  Rhogdi, P75Ntr, Death Domain, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Lin, J. Y. Tann, E. T. Goh, C. Kelly, K. B. Lim, J. F. Gao, C. F. Ibanez
Structural Basis Of Death Domain Signaling In The P75 Neurotrophin Receptor
Elife V. 4 11692 2015
PubMed-ID: 26646181  |  Reference-DOI: 10.7554/ELIFE.11692

(-) Compounds

Molecule 1 - TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 16
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET32A-DERIVED
    Expression System Vector Type: VECTOR
    Fragment: UNP RESIDUES 334-427
    Gene: NGFR, TNFRSF16
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GP80-LNGFR, LOW AFFINITY NEUROTROPHIN RECEPTOR P75NTR, LOW- AFFINITY NERVE GROWTH FACTOR RECEPTOR, NGF RECEPTOR, P75 ICD
 
Molecule 2 - RHO GDP-DISSOCIATION INHIBITOR 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: VECTOR
    Fragment: UNP RESIDUES 31-204
    Gene: ARHGDIA, GDIA1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RHO GDI 1, RHO-GDI ALPHA

 Structural Features

(-) Chains, Units

  12
NMR Structure (10x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N80)

(-) Sites  (0, 0)

(no "Site" information available for 2N80)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N80)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N80)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N80)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N80)

(-) Exons   (0, 0)

(no "Exon" information available for 2N80)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 2n80 A 334 GLYSSLPPAKREEVEKLLNGSAGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWATQDSATLDALLAALRRIQRADLVESLCSESTATSPV 427
                                   343       353       363       373       383       393       403       413       423    


Chain B from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeeee.......eeee...........eeeee...eeeeeeeeee....eeeeeeeeeeee..eeeeeeeeeeeee.....eeeee...ee...hhhhh.eeeeeeeee.......eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2n80 B  31 AQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD 204
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N80)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N80)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N80)

(-) Gene Ontology  (90, 96)

NMR Structure(hide GO term definitions)

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(no "Cis Peptide Bonds" information available for 2n80)
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GDIR1_HUMAN | P52565: 1cc0 1fso 1fst 1ft0 1ft3 1hh4 1kmt 1qvy 1rho 2bxw 2jhs 2jht 2jhu 2jhv 2jhw 2jhx 2jhy 2jhz 2ji0
        TNR16_HUMAN | P08138: 2n83 2n97 3ewv

(-) Related Entries Specified in the PDB File

2n7z 2n83 2n97