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(-) Description

Title :  SOLUTION STRUCTURE OF PH1500: A HOMOHEXAMERIC PROTEIN CENTERED ON A 12-BLADED BETA-PROPELLER
 
Authors :  I. Varnay, V. Truffault, H. Kessler, M. Coles
Date :  28 Jan 13  (Deposition) - 29 Jan 14  (Release) - 29 Jan 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C,D,E,F  (20x)
NMR Structure *:  A,B,C,D,E,F  (1x)
Keywords :  Beta-Propeller, 12-Bladed, Homohexamer, Beta-Clam, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ammelburg, J. Schiff, M. D. Hartmann, I. Varnay, S. Djuranovic, V. Truffault, J. Martin, M. Coles, A. N. Lupas
Solution Structure Of Ph1500: A Homohexameric Protein Centered On A 12-Bladed Beta-Propeller
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PH1500
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET28B
    Gene: PH1500
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3

 Structural Features

(-) Chains, Units

  123456
NMR Structure (20x): ABCDEF
NMR Structure * (1x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2M3X)

(-) Sites  (0, 0)

(no "Site" information available for 2M3X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2M3X)

(-) Cis Peptide Bonds  (12, 240)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Tyr A:54 -Pro A:55
21, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Ser A:56 -Pro A:57
31, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Tyr B:54 -Pro B:55
41, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Ser B:56 -Pro B:57
51, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Tyr C:54 -Pro C:55
61, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Ser C:56 -Pro C:57
71, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Tyr D:54 -Pro D:55
81, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Ser D:56 -Pro D:57
91, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Tyr E:54 -Pro E:55
101, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Ser E:56 -Pro E:57
111, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Tyr F:54 -Pro F:55
121, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Ser F:56 -Pro F:57

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2M3X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2M3X)

(-) Exons   (0, 0)

(no "Exon" information available for 2M3X)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:147
 aligned with O59169_PYRHO | O59169 from UniProtKB/TrEMBL  Length:148

    Alignment length:147
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       
         O59169_PYRHO     2 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee........hhhhhhhhhhh..ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeee.....eeeeee...eeeeeee..eeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2m3x A  -3 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 143
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       


Chain B from PDB  Type:PROTEIN  Length:147
 aligned with O59169_PYRHO | O59169 from UniProtKB/TrEMBL  Length:148

    Alignment length:147
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       
         O59169_PYRHO     2 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee........hhhhhhhhhhh..ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeee.....eeeeee...eeeeeee..eeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2m3x B  -3 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 143
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       


Chain C from PDB  Type:PROTEIN  Length:147
 aligned with O59169_PYRHO | O59169 from UniProtKB/TrEMBL  Length:148

    Alignment length:147
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       
         O59169_PYRHO     2 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee........hhhhhhhhhhh..ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeee.....eeeeee...eeeeeee..eeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2m3x C  -3 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 143
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       


Chain D from PDB  Type:PROTEIN  Length:147
 aligned with O59169_PYRHO | O59169 from UniProtKB/TrEMBL  Length:148

    Alignment length:147
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       
         O59169_PYRHO     2 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee........hhhhhhhhhhh..ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeee.....eeeeee...eeeeeee..eeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2m3x D  -3 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 143
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       


Chain E from PDB  Type:PROTEIN  Length:147
 aligned with O59169_PYRHO | O59169 from UniProtKB/TrEMBL  Length:148

    Alignment length:147
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       
         O59169_PYRHO     2 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee........hhhhhhhhhhh..ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeee.....eeeeee...eeeeeee..eeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2m3x E  -3 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 143
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       


Chain F from PDB  Type:PROTEIN  Length:147
 aligned with O59169_PYRHO | O59169 from UniProtKB/TrEMBL  Length:148

    Alignment length:147
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       
         O59169_PYRHO     2 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee........hhhhhhhhhhh..ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeee.....eeeeee...eeeeeee..eeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2m3x F  -3 EGVIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 143
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2M3X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2M3X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2M3X)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2M3X)

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  Cis Peptide Bonds
    Ser A:56 - Pro A:57   [ RasMol ]  
    Ser B:56 - Pro B:57   [ RasMol ]  
    Ser C:56 - Pro C:57   [ RasMol ]  
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    Ser E:56 - Pro E:57   [ RasMol ]  
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    Tyr A:54 - Pro A:55   [ RasMol ]  
    Tyr B:54 - Pro B:55   [ RasMol ]  
    Tyr C:54 - Pro C:55   [ RasMol ]  
    Tyr D:54 - Pro D:55   [ RasMol ]  
    Tyr E:54 - Pro E:55   [ RasMol ]  
    Tyr F:54 - Pro F:55   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O59169_PYRHO | O59169: 2jv2 4uzr

(-) Related Entries Specified in the PDB File

2jv2 SOLUTION STRUCTURE OF THE PH1500 N-DOMAIN RELATED ID: 18978 RELATED DB: BMRB