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(-) Description

Title :  CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII PH1500
 
Authors :  M. D. Hartmann, M. Ammelburg, S. Djuranovic, A. N. Lupas
Date :  08 Sep 14  (Deposition) - 07 Oct 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (2x)
Keywords :  Unknown Function, Beta-Propeller, 12-Bladed, Hexamer, Dodecamer, Beta-Clam (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ammelburg, J. Schiff, M. D. Hartmann, I. Varnay, S. Djuranovic, V. Truffault, J. Martin, M. Coles, A. N. Lupas
Crystal Structure Of Pyrococcus Horikoshii Ph1500
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN PH1500
    Atcc: 700860
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 53953
    Strain: JCM 9974 / DSM 12428

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (2x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4UZR)

(-) Sites  (0, 0)

(no "Site" information available for 4UZR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UZR)

(-) Cis Peptide Bonds  (15, 15)

Asymmetric Unit
No.Residues
1Tyr A:59 -Pro A:60
2Ser A:61 -Pro A:62
3Tyr B:59 -Pro B:60
4Ser B:61 -Pro B:62
5Tyr C:59 -Pro C:60
6Ser C:61 -Pro C:62
7Leu D:14 -Pro D:15
8Tyr D:59 -Pro D:60
9Ser D:61 -Pro D:62
10Leu E:14 -Pro E:15
11Tyr E:59 -Pro E:60
12Ser E:61 -Pro E:62
13Leu F:14 -Pro F:15
14Tyr F:59 -Pro F:60
15Ser F:61 -Pro F:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UZR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UZR)

(-) Exons   (0, 0)

(no "Exon" information available for 4UZR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........hhhhhhhhhhh..ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeeee....eeeeee.....eeeee..eeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uzr A   7 SELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146  


Chain B from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........hhhhhhhhhhh..ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeee.....eeeeee.....eeeee..eeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uzr B   7 SELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146  


Chain C from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........hhhhhhhhhhh..ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeee.....eeeeee.....eeeee..eeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uzr C   7 SELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146  


Chain D from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.......hhhhhhhhhh...ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeee.....eeeeee.....eeeee..eeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uzr D   7 SELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146  


Chain E from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.......hhhhhhhhhh...ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeee.....eeeeee.....eeeee..eeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uzr E   7 SELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146  


Chain F from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.......hhhhhhhhhh...ee....eeeeee..eeeeeeeeeee...ee.....eeee.....eeeeee...eeeeeee..eeeeee...eeeee.....eeeeee.....eeeee..eeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uzr F   7 SELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPLRVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFENLNKVLVRNDLVVIIDEQKLTLIRT 148
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UZR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UZR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UZR)

(-) Gene Ontology  (0, 0)

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  Cis Peptide Bonds
    Leu D:14 - Pro D:15   [ RasMol ]  
    Leu E:14 - Pro E:15   [ RasMol ]  
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