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(-) Description

Title :  THIOSTREPTON, EPIMER FORM OF RESIDUE 9
 
Authors :  H. R. A. Jonker, S. Baumann, A. Wolf, S. Schoof, F. Hiller, K. W. Schulte, K. N. Kirschner, H. Schwalbe, H. -D. Arndt
Date :  27 Aug 10  (Deposition) - 02 Feb 11  (Release) - 26 Jun 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Natural Antibiotic, Thiopeptide, Antibiotic, Antimicrobial, Antibacterial, Thiazole, Thiazoline (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. R. Jonker, S. Baumann, A. Wolf, S. Schoof, F. Hiller, K. W. Schulte, K. N. Kirschner, H. Schwalbe, H. D. Arndt
Nmr Structures Of Thiostrepton Derivatives For Characterization Of The Ribosomal Binding Site.
Angew. Chem. Int. Ed. Engl. V. 50 3308 2011
PubMed-ID: 21365717  |  Reference-DOI: 10.1002/ANIE.201003582

(-) Compounds

Molecule 1 - THIOSTREPTON
    Chains: A
    Fragment: RESIDUES 1-16
    Mutation: YES
    Organism Scientific: STREPTOMYCES AZUREUS
    Organism Taxid: 146537
    Synonym: ALANINAMIDE, BRYAMYCIN, GARGON, THIACTIN

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 11)

NMR Structure (7, 11)
No.NameCountTypeFull Name
1BB94Mod. Amino Acid(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
2DBU1Mod. Amino Acid(2Z)-2-AMINOBUT-2-ENOIC ACID
3DHA2Mod. Amino Acid2-AMINO-ACRYLIC ACID
4MH61Mod. Amino Acid3-HYDROXY-2-IMINOPROPANOIC ACID
5NH21Mod. Amino AcidAMINO GROUP
6QUA1Mod. Amino Acid8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID
7TS91Mod. Amino Acid(2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3-METHYLPENTANOIC ACID
NMR Structure * (7, 11)
No.NameCountTypeFull Name
1BB94Mod. Amino Acid(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
2DBU1Mod. Amino Acid(2Z)-2-AMINOBUT-2-ENOIC ACID
3DHA2Mod. Amino Acid2-AMINO-ACRYLIC ACID
4MH61Mod. Amino Acid3-HYDROXY-2-IMINOPROPANOIC ACID
5NH21Mod. Amino AcidAMINO GROUP
6QUA1Mod. Amino Acid8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID
7TS91Mod. Amino Acid(2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3-METHYLPENTANOIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 2L2Y)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L2Y)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2L2Y)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:18
 aligned with THCL_STRAJ | P0C8P8 from UniProtKB/Swiss-Prot  Length:72

    Alignment length:18
                                    64        
            THCL_STRAJ   55 MIASASCTTCICTCSCSS 72
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author .................. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                  2l2y A  0 xIAsAScTtCicTcscsx 17
                            |  |  | |9|| |||||
                            |  |  | | || |15-BB9
                            0-QUA | | || ||16-DHA
                               3-DHA| || || 17-NH2
                                  6-BB9| ||   
                                    8-DBU||   
                                     10-TS9   
                                      11-BB9  
                                        13-BB9
                                         14-MH6
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2L2Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L2Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2L2Y)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (THCL_STRAJ | P0C8P8)
biological process
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THCL_STRAJ | P0C8P8: 1e9w 1oln 2jq7 2l2w 2l2x 2l2z 3cf5 4hp2

(-) Related Entries Specified in the PDB File

1e9w 2jq7 2l2w 2l2x 2l2z