Chain A from PDB Type:PROTEIN Length:122
aligned with TNR1_ECOLI | P03012 from UniProtKB/Swiss-Prot Length:183
Alignment length:127
11 21 31 41 51 61 71 81 91 101 111 121
TNR1_ECOLI 2 RLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNE 128
SCOP domains d2gm5a_ A: gamma,delta resolvase, cat alytic domain SCOP domains
CATH domains 2gm5A00 A:2-128 [code=3.40.50.1390, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeee..hhhhhhhhhhhhhhh..hhh.eeeee.-----.hhhhhhhhhhh....eeee.hhhhh..hhhhhhhhhhhhhhh..eeee....ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) RECOMBINASES_3 PDB: A:3-128 UniProt: 2-137 PROSITE (1)
PROSITE (2) ----RECOMBINA-------------------------------------------RECOMBINASES_---------------------------------------------------------- PROSITE (2)
Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
2gm5 A 2 ALFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKA-----DRKGLDLLRmKVKEGDVILVKKLDHLGRDTADmIQLIKEFDAQGVSIRFIDDGISTDSYIGKmVVTILSAVAQAERQRILERTNE 128
11 21 31 | - | 51 | 61 71 | 81 91 101 | 111 121
38 44 53-MSE 76-MSE 106-MSE
Chain B from PDB Type:PROTEIN Length:114
aligned with TNR1_ECOLI | P03012 from UniProtKB/Swiss-Prot Length:183
Alignment length:122
11 21 31 41 51 61 71 81 91 101 111 121
TNR1_ECOLI 2 RLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRIL 123
SCOP domains d2gm5b_ B: gamma,delta resolvase, catalytic domain SCOP domains
CATH domains 2gm5B00 B: 2-123 [code=3.40.50.139 0, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeee..---.hhhhhhhhhhh..hhh.eeeee.-----.hhhhhhhhhhh....eeee.hhhhh..hhhhhhhhhhhhhhh..eeee....ee..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) RECOMBINASES_3 PDB: B:3-123 UniProt: 2-137 PROSITE (1)
PROSITE (2) ----RECOMBINA-------------------------------------------RECOMBINASES_----------------------------------------------------- PROSITE (2)
Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
2gm5 B 2 ALFGYARVST---SLDIQVRALKDAGVKANRIFTDKA-----DRKGLDLLRmKVKEGDVILVKKLDHLGRDTADmIQLIKEFDAQGVSIRFIDDGISTDSYIGKmVVTILSAVAQAERQRIL 123
11 | 21 31 | - | 51 | 61 71 | 81 91 101 | 111 121
11 15 38 44 53-MSE 76-MSE 106-MSE
Chain C from PDB Type:PROTEIN Length:116
aligned with TNR1_ECOLI | P03012 from UniProtKB/Swiss-Prot Length:183
Alignment length:124
11 21 31 41 51 61 71 81 91 101 111 121
TNR1_ECOLI 2 RLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILER 125
SCOP domains d2gm5c_ C: gamma,delta resolvase, catalytic domain SCOP domains
CATH domains 2gm5C00 C:2-125 [code=3.40.50.13 90, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeee.-----hhhhhhhhhhh...hhh.eeee...---..hhhhhhhhhhh....eeee.hhhhh..hhhhhhhhhhhhhhhh.eeee....ee..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) RECOMBINASES_3 PDB: C:3-125 UniProt: 2-137 PROSITE (1)
PROSITE (2) ----RECOMBINA-------------------------------------------RECOMBINASES_------------------------------------------------------- PROSITE (2)
Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
2gm5 C 2 ALFGYARV-----SLDIQVRALKDAGVKANRIFTDKAS---SDRKGLDLLRmKVKEGDVILVKKLDHLGRDTADmIQLIKEFDAQGVSIRFIDDGISTDSYIGKmVVTILSAVAQAERQRILER 125
| - | 21 31 | - | 51 | 61 71 | 81 91 101 | 111 121
9 15 39 43 53-MSE 76-MSE 106-MSE
Chain D from PDB Type:PROTEIN Length:117
aligned with TNR1_ECOLI | P03012 from UniProtKB/Swiss-Prot Length:183
Alignment length:126
11 21 31 41 51 61 71 81 91 101 111 121
TNR1_ECOLI 2 RLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTN 127
SCOP domains d2gm5d_ D: gamma,delta resolvase, catalytic domain SCOP domains
CATH domains 2gm5D00 D:2-127 [code=3.40.50.13 90, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eeeeee.---hhhhhhhhhhhhhh..hhh.eeee.------.hhhhhhhhhhh....eeee.hhhhh..hhhhhhhhhhhhhhh..eeee....ee..hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE (1) RECOMBINASES_3 PDB: D:3-127 UniProt: 2-137 PROSITE (1)
PROSITE (2) ----RECOMBINA-------------------------------------------RECOMBINASES_--------------------------------------------------------- PROSITE (2)
Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
2gm5 D 2 ALFGYARV---QQSLDIQVRALKDAGVKANRIFTDK------DRKGLDLLRmKVKEGDVILVKKLDHLGRDTADmIQLIKEFDAQGVSIRFIDDGISTDSYIGKmVVTILSAVAQAERQRILERTN 127
| - | 21 31 | - | 51 | 61 71 | 81 91 101 | 111 121
9 13 37 44 53-MSE 76-MSE 106-MSE
Legend: |
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→ Mismatch |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |