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(-) Description

Title :  N-SUCCINYL-L-ORNITHINE TRANSCARBAMYLASE FROM B. FRAGILIS COMPLEXED WITH SULFATE AND N-SUCCINYL-L-NORVALINE
 
Authors :  D. Shi, X. Yu, M. H. Malamy, N. M. Allewell, T. Mendel
Date :  21 Dec 05  (Deposition) - 23 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  C,D,E,X,Y,Z
Biol. Unit 1:  X,Y,Z  (1x)
Biol. Unit 2:  C,D,E  (1x)
Biol. Unit 3:  C,D,E,X,Y,Z  (1x)
Keywords :  Alpha/Beta, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Shi, H. Morizono, J. Cabrera-Luque, X. Yu, L. Roth, M. H. Malamy, N. M. Allewell, M. Tuchman
Structure And Catalytic Mechanism Of A Novel N-Succinyl-L-Ornithine Transcarbamylase In Arginine Biosynthesis Of Bacteroides Fragilis.
J. Biol. Chem. V. 281 20623 2006
PubMed-ID: 16704984  |  Reference-DOI: 10.1074/JBC.M601229200

(-) Compounds

Molecule 1 - PUTATIVE ORNITHINE CARBAMOYLTRANSFERASE
    Chains: X, Y, Z, C, D, E
    EC Number: 2.1.3.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ARGF'
    Mutation: YES
    Organism Scientific: BACTEROIDES FRAGILIS
    Organism Taxid: 272559
    Strain: NCTC 9343

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : CDEXYZ
Biological Unit 1 (1x):    XYZ
Biological Unit 2 (1x): CDE   
Biological Unit 3 (1x): CDEXYZ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1SN06Ligand/IonN-(3-CARBOXYPROPANOYL)-L-NORVALINE
2SO48Ligand/IonSULFATE ION
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1SN03Ligand/IonN-(3-CARBOXYPROPANOYL)-L-NORVALINE
2SO44Ligand/IonSULFATE ION
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
1SN03Ligand/IonN-(3-CARBOXYPROPANOYL)-L-NORVALINE
2SO44Ligand/IonSULFATE ION
Biological Unit 3 (2, 14)
No.NameCountTypeFull Name
1SN06Ligand/IonN-(3-CARBOXYPROPANOYL)-L-NORVALINE
2SO48Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER X:47 , LEU X:48 , ARG X:49 , THR X:50 , ARG X:110 , LEU X:275 , HOH X:382 , TRP Z:75BINDING SITE FOR RESIDUE SO4 X 346
02AC2SOFTWARETRP X:75 , SER Y:47 , LEU Y:48 , ARG Y:49 , THR Y:50 , ARG Y:110 , LEU Y:275 , HOH Y:364BINDING SITE FOR RESIDUE SO4 Y 348
03AC3SOFTWARETRP Y:75 , SER Z:47 , LEU Z:48 , ARG Z:49 , THR Z:50 , ARG Z:110 , LEU Z:275 , PRO Z:276 , SN0 Z:349 , HOH Z:363 , HOH Z:390BINDING SITE FOR RESIDUE SO4 Z 350
04AC4SOFTWARESER C:47 , LEU C:48 , ARG C:49 , THR C:50 , ARG C:110 , PRO C:276 , SN0 C:351 , TRP E:75BINDING SITE FOR RESIDUE SO4 C 352
05AC5SOFTWARETRP C:75 , SER D:47 , LEU D:48 , ARG D:49 , THR D:50 , ARG D:110 , LEU D:275 , SN0 D:353BINDING SITE FOR RESIDUE SO4 D 354
06AC6SOFTWARETRP D:75 , SER E:47 , LEU E:48 , ARG E:49 , THR E:50 , ARG E:110 , LEU E:275 , PRO E:276 , SN0 E:355 , HOH E:361BINDING SITE FOR RESIDUE SO4 E 356
07AC7SOFTWAREARG X:35 , ARG Y:35 , ARG Z:35BINDING SITE FOR RESIDUE SO4 X 357
08AC8SOFTWAREARG C:35 , ARG D:35 , ARG E:35BINDING SITE FOR RESIDUE SO4 C 358
09AC9SOFTWAREPHE X:112 , GLU X:142 , HIS X:176 , ARG X:178 , LEU X:180 , VAL X:184 , LYS X:236 , LEU X:275 , ARG X:278 , TRP Z:75 , PRO Z:90BINDING SITE FOR RESIDUE SN0 X 345
10BC1SOFTWARETRP X:75 , PRO X:90 , PHE Y:112 , GLU Y:142 , HIS Y:176 , ARG Y:178 , LEU Y:180 , PRO Y:181 , LYS Y:236 , LEU Y:275 , ARG Y:278 , HOH Y:361 , HOH Y:382BINDING SITE FOR RESIDUE SN0 Y 347
11BC2SOFTWARETRP Y:75 , PRO Y:90 , HOH Y:379 , GLU Z:142 , HIS Z:176 , ARG Z:178 , LEU Z:180 , LYS Z:236 , LEU Z:275 , ARG Z:278 , SO4 Z:350 , HOH Z:373BINDING SITE FOR RESIDUE SN0 Z 349
12BC3SOFTWAREPHE C:112 , GLU C:142 , HIS C:176 , ARG C:178 , LEU C:180 , PRO C:181 , LYS C:236 , LEU C:275 , ARG C:278 , SO4 C:352 , PRO E:90 , HOH E:390BINDING SITE FOR RESIDUE SN0 C 351
13BC4SOFTWARETRP C:75 , PRO C:90 , PHE D:112 , GLU D:142 , HIS D:176 , ARG D:178 , PRO D:181 , LYS D:236 , ARG D:278 , SO4 D:354BINDING SITE FOR RESIDUE SN0 D 353
14BC5SOFTWARETRP D:75 , PRO D:90 , PHE E:112 , GLU E:142 , HIS E:176 , ARG E:178 , LEU E:180 , LYS E:236 , LEU E:275 , ARG E:278 , SO4 E:356 , HOH E:382BINDING SITE FOR RESIDUE SN0 E 355

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FG6)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu X:275 -Pro X:276
2Leu Y:275 -Pro Y:276
3Leu Z:275 -Pro Z:276
4Leu C:275 -Pro C:276
5Leu D:275 -Pro D:276
6Leu E:275 -Pro E:276

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FG6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FG6)

(-) Exons   (0, 0)

(no "Exon" information available for 2FG6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain C from PDB  Type:PROTEIN  Length:321
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:321
                               1                                                                                                                                                                                                                                                                                                                             
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317 
         Q5LI27_BACFN     - ---MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg6c1 C:-2-163 Transcarbamylase-like protein                                                                                                                        d2fg6c2 C:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg6C01 C:-2-147,C:302-318  [code=3.40.50.1370, no name defined]                                                                                      --2fg6C02 C:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg6C01           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeeee.......ee............eehhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhh...eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh............hhhhhhh....eee...........hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg6 C  -2 GSHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317 


Chain D from PDB  Type:PROTEIN  Length:322
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:322
                                1                                                                                                                                                                                                                                                                                                                             
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316  
         Q5LI27_BACFN     - ----MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg6d1 D:-3-163 Transcarbamylase-like protein                                                                                                                         d2fg6d2 D:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg6D01 D:-3-147,D:302-318  [code=3.40.50.1370, no name defined]                                                                                       --2fg6D02 D:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg6D01           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeeee.......ee............eehhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhh....eeeee.......hhhhhh..eee.hhhhhh....eee.......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg6 D  -3 RGSHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316  


Chain E from PDB  Type:PROTEIN  Length:322
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:322
                                1                                                                                                                                                                                                                                                                                                                             
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316  
         Q5LI27_BACFN     - ----MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg6e1 E:-3-163 Transcarbamylase-like protein                                                                                                                         d2fg6e2 E:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg6E01 E:-3-147,E:302-318  [code=3.40.50.1370, no name defined]                                                                                       --2fg6E02 E:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg6E01           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee..hhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhh...eeeeee.......ee............eehhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhh...eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg6 E  -3 RGSHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316  


Chain X from PDB  Type:PROTEIN  Length:322
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:322
                                1                                                                                                                                                                                                                                                                                                                             
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316  
         Q5LI27_BACFN     - ----MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg6x1 X:-3-163 Transcarbamylase-like protein                                                                                                                         d2fg6x2 X:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg6X01 X:-3-147,X:302-318  [code=3.40.50.1370, no name defined]                                                                                       --2fg6X02 X:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg6X01           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeeee.......ee............eehhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhh....eeeee.......hhhhhh..ee..hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg6 X  -3 RGSHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316  


Chain Y from PDB  Type:PROTEIN  Length:322
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:322
                                1                                                                                                                                                                                                                                                                                                                             
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316  
         Q5LI27_BACFN     - ----MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg6y1 Y:-3-163 Transcarbamylase-like protein                                                                                                                         d2fg6y2 Y:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg6Y01 Y:-3-147,Y:302-318  [code=3.40.50.1370, no name defined]                                                                                       --2fg6Y02 Y:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg6Y01           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeeee.......ee............eehhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhh...eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg6 Y  -3 RGSHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316  


Chain Z from PDB  Type:PROTEIN  Length:320
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:320
                              1                                                                                                                                                                                                                                                                                                                             
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
         Q5LI27_BACFN     - --MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg6z1 Z:-1-163 Transcarbamylase-like protein                                                                                                                       d2fg6z2 Z:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg6Z01 Z:-1-147,Z:302-318  [code=3.40.50.1370, no name defined]                                                                                     --2fg6Z02 Z:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg6Z01           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeeee.......ee............eehhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhh...eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg6 Z  -1 SHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: [code=3.40.50.1370, no name defined] (91)
(-)
Bacteroides fragilis nctc 9343. Organism_taxid: 272559. Strain: nctc 9343. (2)
1a2fg6C02C:150-301
1b2fg6D02D:150-301
1c2fg6Z01Z:-1-147,Z:302-318
1d2fg6C01C:-2-147,C:302-318
1e2fg6D01D:-3-147,D:302-318
1f2fg6E01E:-3-147,E:302-318
1g2fg6X01X:-3-147,X:302-318
1h2fg6Y01Y:-3-147,Y:302-318
1i2fg6E02E:150-301
1j2fg6X02X:150-301
1k2fg6Y02Y:150-301
1l2fg6Z02Z:150-301

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FG6)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain C,D,E,X,Y,Z   (Q5LI27_BACFN | Q5LI27)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
    GO:0004070    aspartate carbamoyltransferase activity    Catalysis of the reaction: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + H(+) + phosphate.
    GO:0016743    carboxyl- or carbamoyltransferase activity    Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006207    'de novo' pyrimidine nucleobase biosynthetic process    The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.

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  2fg6
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  Q5LI27_BACFN | Q5LI27
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  2.1.3.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5LI27_BACFN | Q5LI27: 2fg7

(-) Related Entries Specified in the PDB File

1js1 SAME PROTEIN WITH C-TERMINAL HIS-TAG COMPLEXED WITH SULFATE
2fg6