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(-) Description

Title :  N-SUCCINYL-L-ORNITHINE TRANSCARBAMYLASE FROM B. FRAGILIS COMPLEXED WITH CARBAMOYL PHOSPHATE AND N-SUCCINYL-L-NORVALINE
 
Authors :  D. Shi, X. Yu, M. H. Malamy, N. M. Allewell, M. Tuchman
Date :  21 Dec 05  (Deposition) - 23 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  C,D,E,X,Y,Z
Biol. Unit 1:  X,Y,Z  (1x)
Biol. Unit 2:  C,D,E  (1x)
Keywords :  Alpha/Beta, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Shi, H. Morizono, J. Cabrera-Luque, X. Yu, L. Roth, M. H. Malamy, N. M. Allewell, M. Tuchman
Structure And Catalytic Mechanism Of A Novel N-Succinyl-L-Ornithine Transcarbamylase In Arginine Biosynthesis Of Bacteroides Fragilis.
J. Biol. Chem. V. 281 20623 2006
PubMed-ID: 16704984  |  Reference-DOI: 10.1074/JBC.M601229200

(-) Compounds

Molecule 1 - PUTATIVE ORNITHINE CARBAMOYLTRANSFERASE
    Chains: X, Y, Z, C, D, E
    EC Number: 2.1.3.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ARGF'
    Mutation: YES
    Organism Scientific: BACTEROIDES FRAGILIS
    Organism Taxid: 272559
    Strain: NCTC 9343

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : CDEXYZ
Biological Unit 1 (1x):    XYZ
Biological Unit 2 (1x): CDE   

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric Unit (3, 14)
No.NameCountTypeFull Name
1CP6Ligand/IonPHOSPHORIC ACID MONO(FORMAMIDE)ESTER
2SN06Ligand/IonN-(3-CARBOXYPROPANOYL)-L-NORVALINE
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1CP-1Ligand/IonPHOSPHORIC ACID MONO(FORMAMIDE)ESTER
2SN03Ligand/IonN-(3-CARBOXYPROPANOYL)-L-NORVALINE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1CP-1Ligand/IonPHOSPHORIC ACID MONO(FORMAMIDE)ESTER
2SN03Ligand/IonN-(3-CARBOXYPROPANOYL)-L-NORVALINE
3SO41Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG X:35 , ARG Y:35 , ARG Z:35BINDING SITE FOR RESIDUE SO4 X 400
02AC2SOFTWAREARG C:35 , ARG D:35 , ARG E:35BINDING SITE FOR RESIDUE SO4 C 401
03AC3SOFTWAREPHE X:112 , GLU X:142 , HIS X:176 , ARG X:178 , LEU X:180 , PRO X:181 , LYS X:236 , LEU X:275 , ARG X:278 , CP X:346 , HOH X:455 , TRP Z:75 , PRO Z:90BINDING SITE FOR RESIDUE SN0 X 345
04AC4SOFTWARESER X:47 , LEU X:48 , ARG X:49 , THR X:50 , ARG X:110 , HIS X:147 , GLN X:150 , CYS X:274 , LEU X:275 , ARG X:302 , SN0 X:345 , TRP Z:75BINDING SITE FOR RESIDUE CP X 346
05AC5SOFTWAREPRO X:90 , PHE Y:112 , GLU Y:142 , HIS Y:176 , ARG Y:178 , LEU Y:180 , PRO Y:181 , LYS Y:236 , LEU Y:275 , ARG Y:278 , CP Y:348 , HOH Y:356 , HOH Y:397BINDING SITE FOR RESIDUE SN0 Y 347
06AC6SOFTWARETRP X:75 , SER Y:47 , LEU Y:48 , ARG Y:49 , THR Y:50 , ARG Y:110 , HIS Y:147 , GLN Y:150 , CYS Y:274 , LEU Y:275 , ARG Y:302 , SN0 Y:347BINDING SITE FOR RESIDUE CP Y 348
07AC7SOFTWARETRP Y:75 , PRO Y:90 , PHE Z:112 , GLU Z:142 , HIS Z:176 , ARG Z:178 , LEU Z:180 , PRO Z:181 , LYS Z:236 , LEU Z:275 , ARG Z:278 , CP Z:350 , HOH Z:358 , HOH Z:364 , HOH Z:396BINDING SITE FOR RESIDUE SN0 Z 349
08AC8SOFTWARETRP Y:75 , SER Z:47 , LEU Z:48 , ARG Z:49 , THR Z:50 , ARG Z:110 , HIS Z:147 , GLN Z:150 , CYS Z:274 , LEU Z:275 , ARG Z:302 , SN0 Z:349BINDING SITE FOR RESIDUE CP Z 350
09AC9SOFTWAREPHE C:112 , GLU C:142 , HIS C:176 , ARG C:178 , LEU C:180 , PRO C:181 , LYS C:236 , ARG C:278 , CP C:352 , TRP E:75 , PRO E:90 , HOH E:370BINDING SITE FOR RESIDUE SN0 C 351
10BC1SOFTWARESER C:47 , LEU C:48 , ARG C:49 , THR C:50 , ARG C:110 , HIS C:147 , GLN C:150 , CYS C:274 , LEU C:275 , ARG C:302 , SN0 C:351 , TRP E:75BINDING SITE FOR RESIDUE CP C 352
11BC2SOFTWARETRP C:75 , PRO C:90 , PHE D:112 , GLU D:142 , HIS D:176 , ARG D:178 , LEU D:180 , LYS D:236 , LEU D:275 , ARG D:278 , CP D:354BINDING SITE FOR RESIDUE SN0 D 353
12BC3SOFTWARETRP C:75 , SER D:47 , LEU D:48 , ARG D:49 , THR D:50 , ARG D:110 , HIS D:147 , GLN D:150 , CYS D:274 , LEU D:275 , ARG D:302 , SN0 D:353BINDING SITE FOR RESIDUE CP D 354
13BC4SOFTWARETRP D:75 , PRO D:90 , PHE E:112 , GLU E:142 , HIS E:176 , ARG E:178 , LEU E:180 , PRO E:181 , LYS E:236 , LEU E:275 , ARG E:278 , CP E:356 , HOH E:387BINDING SITE FOR RESIDUE SN0 E 355
14BC5SOFTWARETRP D:75 , SER E:47 , LEU E:48 , ARG E:49 , THR E:50 , ARG E:110 , HIS E:147 , GLN E:150 , CYS E:274 , LEU E:275 , ARG E:302 , SN0 E:355BINDING SITE FOR RESIDUE CP E 356

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FG7)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu X:275 -Pro X:276
2Leu Y:275 -Pro Y:276
3Leu Z:275 -Pro Z:276
4Leu C:275 -Pro C:276
5Leu D:275 -Pro D:276
6Leu E:275 -Pro E:276

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FG7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FG7)

(-) Exons   (0, 0)

(no "Exon" information available for 2FG7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain C from PDB  Type:PROTEIN  Length:320
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:320
                              1                                                                                                                                                                                                                                                                                                                             
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
         Q5LI27_BACFN     - --MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg7c1 C:-1-163 Transcarbamylase-like protein                                                                                                                       d2fg7c2 C:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg7C01 C:-1-147,C:302-318  [code=3.40.50.1370, no name defined]                                                                                     --2fg7C02 C:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg7C01           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeeee.......ee............eehhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhhh..eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg7 C  -1 SHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318


Chain D from PDB  Type:PROTEIN  Length:320
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:320
                              1                                                                                                                                                                                                                                                                                                                             
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
         Q5LI27_BACFN     - --MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg7d1 D:-1-163 Transcarbamylase-like protein                                                                                                                       d2fg7d2 D:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg7D01 D:-1-147,D:302-318  [code=3.40.50.1370, no name defined]                                                                                     --2fg7D02 D:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg7D01           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeeee.......ee............eehhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhhh..eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg7 D  -1 SHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318


Chain E from PDB  Type:PROTEIN  Length:320
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:320
                              1                                                                                                                                                                                                                                                                                                                             
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
         Q5LI27_BACFN     - --MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg7e1 E:-1-163 Transcarbamylase-like protein                                                                                                                       d2fg7e2 E:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg7E01 E:-1-147,E:302-318  [code=3.40.50.1370, no name defined]                                                                                     --2fg7E02 E:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg7E01           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeeee.......ee............eehhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhhh..eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg7 E  -1 SHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318


Chain X from PDB  Type:PROTEIN  Length:321
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:321
                               1                                                                                                                                                                                                                                                                                                                             
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317 
         Q5LI27_BACFN     - ---MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg7x1 X:-2-163 Transcarbamylase-like protein                                                                                                                        d2fg7x2 X:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg7X01 X:-2-147,X:302-318  [code=3.40.50.1370, no name defined]                                                                                      --2fg7X02 X:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg7X01           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeeee.......ee............eehhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhhh..eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg7 X  -2 GSHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317 


Chain Y from PDB  Type:PROTEIN  Length:321
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:321
                               1                                                                                                                                                                                                                                                                                                                             
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317 
         Q5LI27_BACFN     - ---MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg7y1 Y:-2-163 Transcarbamylase-like protein                                                                                                                        d2fg7y2 Y:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg7Y01 Y:-2-147,Y:302-318  [code=3.40.50.1370, no name defined]                                                                                      --2fg7Y02 Y:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg7Y01           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeeee.......ee............eehhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhhh..eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg7 Y  -2 GSHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317 


Chain Z from PDB  Type:PROTEIN  Length:320
 aligned with Q5LI27_BACFN | Q5LI27 from UniProtKB/TrEMBL  Length:318

    Alignment length:320
                              1                                                                                                                                                                                                                                                                                                                             
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
         Q5LI27_BACFN     - --MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2fg7z1 Z:-1-163 Transcarbamylase-like protein                                                                                                                       d2fg7z2 Z:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2fg7Z01 Z:-1-147,Z:302-318  [code=3.40.50.1370, no name defined]                                                                                     --2fg7Z02 Z:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2fg7Z01           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeeee.......ee............eehhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhhh..eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fg7 Z  -1 SHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: [code=3.40.50.1370, no name defined] (91)
(-)
Bacteroides fragilis nctc 9343. Organism_taxid: 272559. Strain: nctc 9343. (2)
1a2fg7C02C:150-301
1b2fg7Y02Y:150-301
1c2fg7Z02Z:150-301
1d2fg7C01C:-1-147,C:302-318
1e2fg7D01D:-1-147,D:302-318
1f2fg7E01E:-1-147,E:302-318
1g2fg7Z01Z:-1-147,Z:302-318
1h2fg7X01X:-2-147,X:302-318
1i2fg7Y01Y:-2-147,Y:302-318
1j2fg7D02D:150-301
1k2fg7E02E:150-301
1l2fg7X02X:150-301

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FG7)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain C,D,E,X,Y,Z   (Q5LI27_BACFN | Q5LI27)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
    GO:0004070    aspartate carbamoyltransferase activity    Catalysis of the reaction: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + H(+) + phosphate.
    GO:0016743    carboxyl- or carbamoyltransferase activity    Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006207    'de novo' pyrimidine nucleobase biosynthetic process    The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.

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  2fg7
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  2.1.3.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5LI27_BACFN | Q5LI27: 2fg6

(-) Related Entries Specified in the PDB File

1js1 SAME PROTEIN WITH C-TERMINAL HIS-TAG COMPLEXED WITH PHOSPHATE
2fg6 SAME PROTEIN COMPLEXED WITH SULFATE AND N-SUCCINYL-L- NORVLINE