Chain A from PDB Type:PROTEIN Length:161
aligned with SLD5_HUMAN | Q9BRT9 from UniProtKB/Swiss-Prot Length:223
Alignment length:192
30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
SLD5_HUMAN 21 LTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIA 212
SCOP domains d2ehoa1 A:21-165 GINS complex subunit 4, SLD5 --------- ----------- SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh............---------------------------.....hhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript 3 (1) Exon 3.1h Exon 3.2b PDB: A:33-61 Exon 3.3a PDB: A:62-99 (gaps) Exon 3.4 PDB: A:100-132 -----------------------------Exon 3.6b PDB: A:162-174 -------------------- Transcript 3 (1)
Transcript 3 (2) ---------------------------------------------------------------------------------------------------------------Exon 3.5 PDB: A:132-162 -----------------------------Exon 3.6h Transcript 3 (2)
2eho A 21 LTPAELIERLEQAWmNEKFAPELLESKPEIVECVmEQLEHmEENLR----EDLKVSIHQmEmERIRYVLSSYLRCRLmKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFmANTESYLKNVALKHmPPNLQKVDLFRAVPKPDLDSYVFLR---------------------------SQHLIRYKTIA 212
30 | 40 50 | 60| | -| 80 | 90 100 110 120 130 | 140 150 160 170 | - - - | 210
35-MSE 55-MSE | 66 71 80-MSE 98-MSE 134-MSE 149-MSE 174 202
61-MSE 82-MSE
Chain B from PDB Type:PROTEIN Length:145
aligned with PSF1_HUMAN | Q14691 from UniProtKB/Swiss-Prot Length:196
Alignment length:145
10 20 30 40 50 60 70 80 90 100 110 120 130 140
PSF1_HUMAN 1 MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPKS 145
SCOP domains d2ehob1 B:1-145 DNA replication complex GINS protein PSF1 SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------I------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 2 (1) Exon 2.1b PDB: B:1-25 Exon 2.3b PDB: B:26-4--------------------------------Exon 2.5 PDB: B:80-110 Exon 2.7 PDB: B:111-145 Transcript 2 (1)
Transcript 2 (2) ----------------------------------------------Exon 2.4a PDB: B:47-80 ----------------------------------------------------------------- Transcript 2 (2)
2eho B 1 mFCEKAmELIRELHRAPEGQLPAFNEDGLRQVLEEmKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSILPNALRFHmAAEEmEWFNNYKRSLATYmRSLGGDEGLDITQDmKPPKS 145
| | 10 20 30 | 40 50 60 70 80 90 100 | 110| 120 | 130 140
| 7-MSE 36-MSE 106-MSE| 125-MSE 140-MSE
1-MSE 111-MSE
Chain C from PDB Type:PROTEIN Length:168
aligned with PSF2_HUMAN | Q9Y248 from UniProtKB/Swiss-Prot Length:185
Alignment length:174
1
| 9 19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169
PSF2_HUMAN - -MDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTN 173
SCOP domains -d2ehoc2 C:1-61 DNA replication complex GINS protein PSF2 d2ehoc1 C:62-173 DNA replication complex GINS protein PSF2 SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..hhhhhhhhhh..eeeeee......eee..eee........eeeehhhhhhhhhh..eeee.....hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.------..........hhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript 1 (1) -Exon 1.1 PDB: C:1-30 Exon 1.2 PDB: C:31-69 UniProt: 31-69 --------------------------------Exon 1.4 PDB: C:102-139 UniProt: 102-144 Exon 1.5 PDB: C:146-173 Transcript 1 (1)
Transcript 1 (2) ---------------------------------------------------------------------Exon 1.3 PDB: C:69-102 ----------------------------------------------------------------------- Transcript 1 (2)
2eho C 0 mmDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWmDVEKLEKmRDHERKEETFTPmPSPYYmELTKLLLNHASDNIPKADEIRTLVKDmWDTRIAKLRVSADSFVRQQ------DNLTLmEINTSGTFLTQALNHmYKLRTN 173
|| 9 19 29 39 49 59 | 69 | 79 |89 | 99 109 119| 129 139 |149 | 159 169
0-MSE 66-MSE 74-MSE 87-MSE | 120-MSE 139 146 | 167-MSE
1-MSE 93-MSE 151-MSE
Chain D from PDB Type:PROTEIN Length:182
aligned with PSF3_HUMAN | Q9BRX5 from UniProtKB/Swiss-Prot Length:216
Alignment length:190
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192
PSF3_HUMAN 3 EAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKG 192
SCOP domains d2ehod2 D:3-87 GINS complex subunit 3, PSF3 d2ehod1 D:88-192 GINS complex subunit 3, PSF3 SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..................hhhhhhhh....eeee...ee........--------.ee....eee.hhhhhhhhh......eee........hhhhhhhhhhhhh.......hhhhhhhhh......hhhhhhhhhh.....hhhhhhhhhh.....hhhhhhhhh..hhhhhhhhhhhhh......... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 4 Exon 4.1b PDB: D:3-62 (gaps) UniProt: 1-62 [INCOMPLETE] Exon 4.3 PDB: D:63-140 UniProt: 63-140 Exon 4.4b PDB: D:141-192 UniProt: 141-216 Transcript 4
2eho D 3 EAYFRVESGALGPEENFLSLDDILmSHEKLPVRTETAmPRLGAFFLE--------NAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKmGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRImDSSQNAYNEDTSALVARLDEmERGLFQTGQKGLNDFQCWEKG 192
12 22 | 32 |42 | - | 62 72 82 92 102 112 122 132 142 152 162 172 182 192
27-MSE 40-MSE 49 58 112-MSE 150-MSE 171-MSE
Chain E from PDB Type:PROTEIN Length:190
aligned with SLD5_HUMAN | Q9BRT9 from UniProtKB/Swiss-Prot Length:223
Alignment length:194
29 39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209
SLD5_HUMAN 20 VLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAP 213
SCOP domains d2ehoe1 E:20-165 automated matches d2ehoe2 E:166-213 automated matches SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..----.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh.......eeeee....eeeeee.........eeeee....eeeeehhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 3 (1) Exon 3.1h Exon 3.2b PDB: E:33-61 Exon 3.3a PDB: E:62-99 (gaps) Exon 3.4 PDB: E:100-132 -----------------------------Exon 3.6b PDB: E:162-192 --------------------- Transcript 3 (1)
Transcript 3 (2) ----------------------------------------------------------------------------------------------------------------Exon 3.5 PDB: E:132-162 -----------------------------Exon 3.6h [INCOMPLETE] Transcript 3 (2)
2eho E 20 VLTPAELIERLEQAWmNEKFAPELLESKPEIVECVmEQLEHmEENLR----EDLKVSIHQmEmERIRYVLSSYLRCRLmKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFmANTESYLKNVALKHmPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAP 213
29 | 39 49 | 59 | | - | 79| | 89 99 109 119 129 | 139 149 159 169 179 189 199 209
35-MSE 55-MSE | 66 71 80-MSE 98-MSE 134-MSE 149-MSE
61-MSE 82-MSE
Chain F from PDB Type:PROTEIN Length:146
aligned with PSF1_HUMAN | Q14691 from UniProtKB/Swiss-Prot Length:196
Alignment length:146
1
| 9 19 29 39 49 59 69 79 89 99 109 119 129 139
PSF1_HUMAN - -MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPKS 145
SCOP domains d2ehof_ F: DNA replication complex GINS protein PSF1 SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhhhhhh.................. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------I------------------------------------------------ SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 2 (1) -Exon 2.1b PDB: F:1-25 Exon 2.3b PDB: F:26-4--------------------------------Exon 2.5 PDB: F:80-110 Exon 2.7 PDB: F:111-145 Transcript 2 (1)
Transcript 2 (2) -----------------------------------------------Exon 2.4a PDB: F:47-80 ----------------------------------------------------------------- Transcript 2 (2)
2eho F 0 mmFCEKAmELIRELHRAPEGQLPAFNEDGLRQVLEEmKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSILPNALRFHmAAEEmEWFNNYKRSLATYmRSLGGDEGLDITQDmKPPKS 145
|| | 9 19 29 | 39 49 59 69 79 89 99 |109 | 119 | 129 139|
0-MSE 7-MSE 36-MSE 106-MSE| 125-MSE 140-MSE
1-MSE 111-MSE
Chain G from PDB Type:PROTEIN Length:176
aligned with PSF2_HUMAN | Q9Y248 from UniProtKB/Swiss-Prot Length:185
Alignment length:176
1
| 9 19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169
PSF2_HUMAN - -MDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTNLQ 175
SCOP domains d2ehog2 G:0-61 automated matches d2ehog1 G:62-175 DNA replication complex GINS protein PSF2 SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhh..eeee........ee....ee........eeeehhhhhhhhh............hhhhhhhhhhhhhhhh........hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee....hhhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 1 (1) -Exon 1.1 PDB: G:1-30 Exon 1.2 PDB: G:31-69 UniProt: 31-69 --------------------------------Exon 1.4 PDB: G:102-144 UniProt: 102-144 Exon 1.5 PDB: G:145-175 Transcript 1 (1)
Transcript 1 (2) ---------------------------------------------------------------------Exon 1.3 PDB: G:69-102 ------------------------------------------------------------------------- Transcript 1 (2)
2eho G 0 mmDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWmDVEKLEKmRDHERKEETFTPmPSPYYmELTKLLLNHASDNIPKADEIRTLVKDmWDTRIAKLRVSADSFVRQQEAHAKLDNLTLmEINTSGTFLTQALNHmYKLRTNLQ 175
|| 9 19 29 39 49 59 | 69 | 79 |89 | 99 109 119| 129 139 149 | 159 169
0-MSE 66-MSE 74-MSE 87-MSE | 120-MSE 151-MSE 167-MSE
1-MSE 93-MSE
Chain H from PDB Type:PROTEIN Length:183
aligned with PSF3_HUMAN | Q9BRX5 from UniProtKB/Swiss-Prot Length:216
Alignment length:191
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192
PSF3_HUMAN 3 EAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQ 193
SCOP domains d2ehoh2 H:3-87 GINS complex subunit 3, PSF3 d2ehoh1 H:88-193 GINS complex subunit 3, PSF3 SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..................hhhhhhhh..eeeeee......hhhhh.--------........eeeeehhhhhhhh......eee..hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 4 Exon 4.1b PDB: H:3-62 (gaps) UniProt: 1-62 [INCOMPLETE] Exon 4.3 PDB: H:63-140 UniProt: 63-140 Exon 4.4b PDB: H:141-193 UniProt: 141-216 Transcript 4
2eho H 3 EAYFRVESGALGPEENFLSLDDILmSHEKLPVRTETAmPRLGAFFL--------DNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKmGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRImDSSQNAYNEDTSALVARLDEmERGLFQTGQKGLNDFQCWEKGQ 193
12 22 | 32 |42 | - | 62 72 82 92 102 112 122 132 142 152 162 172 182 192
27-MSE 40-MSE 48 57 112-MSE 150-MSE 171-MSE
Chain I from PDB Type:PROTEIN Length:192
aligned with SLD5_HUMAN | Q9BRT9 from UniProtKB/Swiss-Prot Length:223
Alignment length:192
30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
SLD5_HUMAN 21 LTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIA 212
SCOP domains d2ehoi1 I:21-165 automated matches d2ehoi2 I:166-212 automated matches SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh.......eeeee.....eeeee.........eeeee....eeeee..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript 3 (1) Exon 3.1h Exon 3.2b PDB: I:33-61 Exon 3.3a PDB: I:62-99 UniProt: 62-99Exon 3.4 PDB: I:100-132 -----------------------------Exon 3.6b PDB: I:162-192 -------------------- Transcript 3 (1)
Transcript 3 (2) ---------------------------------------------------------------------------------------------------------------Exon 3.5 PDB: I:132-162 -----------------------------Exon 3.6h Transcript 3 (2)
2eho I 21 LTPAELIERLEQAWmNEKFAPELLESKPEIVECVmEQLEHmEENLRRAKREDLKVSIHQmEmERIRYVLSSYLRCRLmKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFmANTESYLKNVALKHmPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIA 212
30 | 40 50 | 60| 70 80 | 90 100 110 120 130 | 140 150 160 170 180 190 200 210
35-MSE 55-MSE | 80-MSE 98-MSE 134-MSE 149-MSE
61-MSE 82-MSE
Chain J from PDB Type:PROTEIN Length:145
aligned with PSF1_HUMAN | Q14691 from UniProtKB/Swiss-Prot Length:196
Alignment length:145
10 20 30 40 50 60 70 80 90 100 110 120 130 140
PSF1_HUMAN 1 MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPKS 145
SCOP domains d2ehoj_ J: DNA replication complex GINS protein PSF1 SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhh................. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------I------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 2 (1) Exon 2.1b PDB: J:1-25 Exon 2.3b PDB: J:26-4--------------------------------Exon 2.5 PDB: J:80-110 Exon 2.7 PDB: J:111-145 Transcript 2 (1)
Transcript 2 (2) ----------------------------------------------Exon 2.4a PDB: J:47-80 ----------------------------------------------------------------- Transcript 2 (2)
2eho J 1 mFCEKAmELIRELHRAPEGQLPAFNEDGLRQVLEEmKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSILPNALRFHmAAEEmEWFNNYKRSLATYmRSLGGDEGLDITQDmKPPKS 145
| | 10 20 30 | 40 50 60 70 80 90 100 | 110| 120 | 130 140
1-MSE 7-MSE 36-MSE 106-MSE| 125-MSE 140-MSE
111-MSE
Chain K from PDB Type:PROTEIN Length:175
aligned with PSF2_HUMAN | Q9Y248 from UniProtKB/Swiss-Prot Length:185
Alignment length:175
1
| 9 19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169
PSF2_HUMAN - -MDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTNL 174
SCOP domains d2ehok2 K:0-61 automated matches d2ehok1 K:62-174 DNA replication complex GINS protein PSF2 SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhh..eeeeee......eee..eee........eeeehhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee....hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 1 (1) -Exon 1.1 PDB: K:1-30 Exon 1.2 PDB: K:31-69 UniProt: 31-69 --------------------------------Exon 1.4 PDB: K:102-144 UniProt: 102-144 Exon 1.5 PDB: K:145-174 Transcript 1 (1)
Transcript 1 (2) ---------------------------------------------------------------------Exon 1.3 PDB: K:69-102 ------------------------------------------------------------------------ Transcript 1 (2)
2eho K 0 mmDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWmDVEKLEKmRDHERKEETFTPmPSPYYmELTKLLLNHASDNIPKADEIRTLVKDmWDTRIAKLRVSADSFVRQQEAHAKLDNLTLmEINTSGTFLTQALNHmYKLRTNL 174
|| 9 19 29 39 49 59 | 69 | 79 |89 | 99 109 119| 129 139 149 | 159 169
0-MSE 66-MSE 74-MSE 87-MSE | 120-MSE 151-MSE 167-MSE
1-MSE 93-MSE
Chain L from PDB Type:PROTEIN Length:182
aligned with PSF3_HUMAN | Q9BRX5 from UniProtKB/Swiss-Prot Length:216
Alignment length:191
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192
PSF3_HUMAN 3 EAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQ 193
SCOP domains d2ehol2 L:3-87 GINS complex subunit 3, PSF3 d2ehol1 L:88-193 GINS complex subunit 3, PSF3 SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..................hhhhhhhhh.eeeeee...ee.hhhhh.---------.ee....eeeeehhhhhhhh......eee..hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 4 Exon 4.1b PDB: L:3-62 (gaps) UniProt: 1-62 [INCOMPLETE] Exon 4.3 PDB: L:63-140 UniProt: 63-140 Exon 4.4b PDB: L:141-193 UniProt: 141-216 Transcript 4
2eho L 3 EAYFRVESGALGPEENFLSLDDILmSHEKLPVRTETAmPRLGAFFL---------NAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKmGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRImDSSQNAYNEDTSALVARLDEmERGLFQTGQKGLNDFQCWEKGQ 193
12 22 | 32 |42 | - | 62 72 82 92 102 112 122 132 142 152 162 172 182 192
27-MSE 40-MSE 48 58 112-MSE 150-MSE 171-MSE
Legend: |
|
→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |