Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF TT0972 PROTEIN FROM THERMUS THERMOPHILUS
 
Authors :  M. Kumei, E. Inagaki, N. Nakano, A. Shinkai, S. Yokoyama, Riken Struct Genomics/Proteomics Initiative (Rsgi)
Date :  11 Jul 05  (Deposition) - 19 Sep 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (3x)
Biol. Unit 2:  E,F,G,H  (3x)
Keywords :  Dodecamer, Flavin, Flavin-Adenine Dinucleotide, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kumei, E. Inagaki, N. Nakano, A. Shinkai, S. Yokoyama
Crystal Structure Of Tt0972 Protein From Thermus Thermophilus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TT0972 PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (3x): ABCD    
Biological Unit 2 (3x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 21)

Asymmetric Unit (3, 21)
No.NameCountTypeFull Name
1FAD8Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2K4Ligand/IonPOTASSIUM ION
3PO49Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 24)
No.NameCountTypeFull Name
1FAD12Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2K-1Ligand/IonPOTASSIUM ION
3PO412Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 27)
No.NameCountTypeFull Name
1FAD12Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2K-1Ligand/IonPOTASSIUM ION
3PO415Ligand/IonPHOSPHATE ION

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:6 , VAL A:8 , HOH A:2178 , LYS B:6 , VAL B:8 , LYS C:6 , VAL C:8BINDING SITE FOR RESIDUE PO4 A 2101
02AC2SOFTWARELYS D:6BINDING SITE FOR RESIDUE PO4 D 2102
03AC3SOFTWARELYS E:6 , VAL E:8 , HOH E:2106 , HOH E:2125 , HOH E:2184 , LYS F:6 , VAL F:8 , LYS G:6 , VAL G:8BINDING SITE FOR RESIDUE PO4 E 2103
04AC4SOFTWARELYS H:6BINDING SITE FOR RESIDUE PO4 H 2104
05AC5SOFTWARETHR B:13 , SER B:14 , GLU B:55 , HOH B:2127 , HOH B:2140 , HOH B:2170 , GLY C:2 , LYS C:3BINDING SITE FOR RESIDUE PO4 B 2105
06AC6SOFTWAREGLY D:2 , LYS D:3 , THR D:13 , SER D:14 , GLU D:55 , HOH D:2138 , HOH D:2160 , HOH D:2179BINDING SITE FOR RESIDUE PO4 D 2106
07AC7SOFTWARETHR F:13 , SER F:14 , GLU F:55 , HOH F:2134 , HOH F:2155 , GLY G:2 , LYS G:3BINDING SITE FOR RESIDUE PO4 F 2107
08AC8SOFTWAREGLY H:2 , LYS H:3 , THR H:13 , SER H:14 , GLU H:55 , HOH H:2137 , HOH H:2165 , HOH H:2171 , HOH H:2177BINDING SITE FOR RESIDUE PO4 H 2108
09AC9SOFTWAREGLY E:2 , LYS E:3 , THR G:13 , SER G:14 , GLU G:15 , GLU G:55 , HOH G:2135 , HOH G:2166BINDING SITE FOR RESIDUE PO4 G 2109
10BC1SOFTWAREGLU A:19BINDING SITE FOR RESIDUE K A 1150
11BC2SOFTWAREGLU B:19 , GLU C:19 , GLU D:19BINDING SITE FOR RESIDUE K C 1151
12BC3SOFTWAREGLU E:19BINDING SITE FOR RESIDUE K E 1152
13BC4SOFTWAREGLU F:19 , GLU G:19 , GLU H:19BINDING SITE FOR RESIDUE K G 1153
14BC5SOFTWARELYS A:3 , TYR A:5 , LEU A:33 , ARG A:34 , HIS A:35 , LEU A:36 , ASP A:37 , TRP A:38 , ARG A:45 , THR A:47 , GLN A:57 , ARG A:65 , HOH A:2110 , HOH A:2159 , HOH A:2160 , HOH A:2161 , HOH A:2163 , HOH A:2169 , FAD B:1202 , VAL C:11 , GLN C:57 , VAL C:59BINDING SITE FOR RESIDUE FAD A 1201
15BC6SOFTWAREVAL A:11 , GLN A:57 , FAD A:1201 , LYS B:3 , TYR B:5 , HIS B:35 , ASP B:37 , TRP B:38 , ARG B:65 , HOH B:2145 , HOH B:2161 , HOH B:2167 , ARG C:45 , THR C:47 , GLN C:57 , HOH C:1257BINDING SITE FOR RESIDUE FAD B 1202
16BC7SOFTWAREGLN B:57 , HOH B:2150 , HOH B:2187 , LYS C:3 , TYR C:5 , GLU C:16 , HIS C:35 , ASP C:37 , TRP C:38 , ARG C:65 , HOH C:1224 , HOH C:1269 , HOH C:1270 , HOH C:1279 , HOH C:1281 , ARG D:45 , THR D:47 , GLN D:57 , FAD D:1204 , HOH D:2132BINDING SITE FOR RESIDUE FAD C 1203
17BC8SOFTWAREARG B:45 , THR B:47 , ILE B:48 , GLU B:50 , GLN B:57 , FAD C:1203 , LYS D:3 , TYR D:5 , VAL D:11 , ARG D:34 , HIS D:35 , LEU D:36 , ASP D:37 , TRP D:38 , GLN D:57 , ARG D:65 , HOH D:2115 , HOH D:2174 , GLU E:50 , ALA E:51BINDING SITE FOR RESIDUE FAD D 1204
18BC9SOFTWARELYS E:3 , TYR E:5 , ARG E:30 , ARG E:34 , HIS E:35 , ASP E:37 , TRP E:38 , ARG E:45 , THR E:47 , GLN E:57 , ARG E:65 , HOH E:2156 , HOH E:2164 , HOH E:2165 , HOH E:2166 , HOH E:2167 , HOH E:2181 , FAD F:1206 , VAL G:11 , GLN G:57 , VAL G:59 , HOH G:2120BINDING SITE FOR RESIDUE FAD E 1205
19CC1SOFTWAREVAL E:11 , GLN E:57 , FAD E:1205 , LYS F:3 , TYR F:5 , ARG F:30 , LEU F:33 , ARG F:34 , HIS F:35 , LEU F:36 , ASP F:37 , TRP F:38 , ARG F:65 , HOH F:2153 , HOH F:2159 , HOH F:2160 , HOH F:2167 , ARG G:45 , THR G:47 , GLN G:57BINDING SITE FOR RESIDUE FAD F 1206
20CC2SOFTWAREGLN F:57 , HOH F:2182 , LYS G:3 , TYR G:5 , GLU G:16 , HIS G:35 , ASP G:37 , TRP G:38 , ARG G:65 , HOH G:2122 , HOH G:2147 , HOH G:2164 , HOH G:2165 , HOH G:2176 , HOH G:2180 , ARG H:45 , THR H:47 , GLN H:57 , FAD H:1208BINDING SITE FOR RESIDUE FAD G 1207
21CC3SOFTWAREARG F:45 , THR F:47 , GLN F:57 , FAD G:1207 , LYS H:3 , TYR H:5 , VAL H:11 , ARG H:34 , HIS H:35 , LEU H:36 , ASP H:37 , TRP H:38 , GLN H:57 , VAL H:59 , ARG H:65 , HOH H:2118 , HOH H:2181BINDING SITE FOR RESIDUE FAD H 1208

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CZ8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2CZ8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CZ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2CZ8)

(-) Exons   (0, 0)

(no "Exon" information available for 2CZ8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:67
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:67
                                    11        21        31        41        51        61       
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
               SCOP domains d2cz8a1 A:2-68 Uncharacterized protein TTHA1431                     SCOP domains
               CATH domains 2cz8A00 A:2-68 Flavin-binding protein dodecin                       CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  2cz8 A  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
                                    11        21        31        41        51        61       


Chain B from PDB  Type:PROTEIN  Length:66
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:66
                                    12        22        32        42        52        62      
           DODEC_THET8    3 KVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
               SCOP domains d2cz8b_ B: automated matches                                       SCOP domains
               CATH domains 2cz8B00 B:3-68 Flavin-binding protein dodecin                      CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  2cz8 B  3 KVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
                                    12        22        32        42        52        62      


Chain C from PDB  Type:PROTEIN  Length:67
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:67
                                    11        21        31        41        51        61       
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
               SCOP domains d2cz8c_ C: automated matches                                        SCOP domains
               CATH domains 2cz8C00 C:2-68 Flavin-binding protein dodecin                       CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  2cz8 C  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
                                    11        21        31        41        51        61       


Chain D from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2cz8d_ D: automated matches                                         SCOP domains
               CATH domains 2cz8D00 D:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2cz8 D  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain E from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2cz8e_ E: automated matches                                         SCOP domains
               CATH domains 2cz8E00 E:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2cz8 E  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain F from PDB  Type:PROTEIN  Length:66
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:66
                                    12        22        32        42        52        62      
           DODEC_THET8    3 KVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
               SCOP domains d2cz8f_ F: automated matches                                       SCOP domains
               CATH domains 2cz8F00 F:3-68 Flavin-binding protein dodecin                      CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  2cz8 F  3 KVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
                                    12        22        32        42        52        62      


Chain G from PDB  Type:PROTEIN  Length:67
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:67
                                    11        21        31        41        51        61       
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
               SCOP domains d2cz8g_ G: automated matches                                        SCOP domains
               CATH domains 2cz8G00 G:2-68 Flavin-binding protein dodecin                       CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhh....eeeeeeeeeeeee....eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  2cz8 G  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
                                    11        21        31        41        51        61       


Chain H from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2cz8h_ H: automated matches                                         SCOP domains
               CATH domains 2cz8H00 H:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2cz8 H  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CZ8)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (DODEC_THET8 | Q5SIE3)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    FAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    K  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2cz8)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2cz8
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  DODEC_THET8 | Q5SIE3
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  DODEC_THET8 | Q5SIE3
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DODEC_THET8 | Q5SIE3: 2deg 2ux9 2v18 2v19 2v21 2vyx

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2CZ8)