2C8G - JenaLib

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Title :   STRUCTURE OF THE PN LOOP Q182A MUTANT C3BOT1 EXOENZYME (FREE STATE, CRYSTAL FORM I)

Authors :   E. A. Stura, J. Menetrey, G. Flatau, P. Boquet, A. Menez

Date :   03 Dec 05 (Deposition) - 27 Feb 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   C3 Exoenzyme, Artt Motif, Adp-Ribosyltransferase, Bacterial Toxins, Transferase, Glycosyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. A. Stura, J. Menetrey, G. Flatau, P. Boquet, A. Menez
Structural Properties Of Wild-Type And Two Artt Motif Mutants Clostridium Botulinum C3 Exoenzyme Isoform 1 In Different Substrate Complexed States And Crystal Forms.
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - MONO-ADP-RIBOSYLTRANSFERASE C3
	Chains	:	A, B, C, D
	EC Number	:	2.4.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Mutation	:	YES
	Organism Scientific	:	CLOSTRIDIUM BOTULINUM
	Organism Taxid	:	1491
	Synonym	:	EXOENZYME C3

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG B:128 , SER B:174 , HOH B:2055	BINDING SITE FOR RESIDUE SO4 B1247
2	AC2	SOFTWARE	ARG C:128 , ARG C:186 , HOH C:2088	BINDING SITE FOR RESIDUE SO4 C1252
3	AC3	SOFTWARE	ARG D:128 , ARG D:186	BINDING SITE FOR RESIDUE SO4 D1248

(no "SS Bond" information available for 2C8G)

(no "Cis Peptide Bond" information available for 2C8G)

(no "SAP(SNP)/Variant" information available for 2C8G)

(no "PROSITE Motif" information available for 2C8G)

(no "Exon" information available for 2C8G)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:207
 aligned with ARC3_CBDP | P15879 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:207
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       
            ARC3_CBDP    44 NTYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGTAINP 250
               SCOP domains d2c8ga_ A: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains 2c8gA00 A:44-250 Toxin ADP-ribosyltransferase; Chain A, domain 1                                                                                                                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh........eeeeeeehhhhhhhhhh..........hhhhhhhhhhhhh..eeee...eeee...hhhhh...eeeeeee......ee.hhhh......eeee...eeeeeeeeee......eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c8g A  44 NTYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSAFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGTAINP 250
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243

Chain B from PDB  Type:PROTEIN  Length:202
 aligned with ARC3_CBDP | P15879 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:202
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244  
            ARC3_CBDP    45 TYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGT 246
               SCOP domains d2c8gb_ B: automated matches                                                                                                                                                                               SCOP domains
               CATH domains 2c8gB00 B:45-246 Toxin ADP-ribosyltransferase; Chain A, domain 1                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh........eeeeeeehhhhhhhhhhh.........hhhhhhhhhhhhh..eeee...eeee...hhhhh...eeeeeee......ee...........eeee...eeeeeeeeee......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c8g B  45 TYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSAFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGT 246
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244

Chain C from PDB  Type:PROTEIN  Length:208
 aligned with ARC3_CBDP | P15879 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:208
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243        
            ARC3_CBDP    44 NTYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGTAINPK 251
               SCOP domains d2c8gc_ C: automated matches                                                                                                                                                                                     SCOP domains
               CATH domains 2c8gC00 C:44-251 Toxin ADP-ribosyltransferase; Chain A, domain 1                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeeeeeehhhhhhhhhh..........hhhhhhhhhhhhh..eeee...eeee...hhhhhh..eeeeeee......ee...........eeee...eeeeeeeeee......eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c8g C  44 NTYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSAFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGTAINPK 251
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243

Chain D from PDB  Type:PROTEIN  Length:205
 aligned with ARC3_CBDP | P15879 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:205
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243     
            ARC3_CBDP    44 NTYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGTAI 248
               SCOP domains d2c8gd_ D: automated matches                                                                                                                                                                                  SCOP domains
               CATH domains 2c8gD00 D:44-248 Toxin ADP-ribosyltransferase; Chain A, domain 1                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeeeeeehhhhhhhhhhh.........hhhhhhhhhhhhh..eeee...eeee...hhhhh...eeeeeee......ee...........eeee...eeeeeeeeee......eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c8g D  44 NTYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSAFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGTAI 248
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: ADP-ribosylation (157)

Superfamily: ADP-ribosylation (157)

Family: ADP-ribosylating toxins (85)

Protein domain: automated matches (21)

Clostridium botulinum [TaxId: 1491] (9)

1a	d2c8ga_	A:
1b	d2c8gb_	B:
1c	d2c8gc_	C:
1d	d2c8gd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Toxin ADP-ribosyltransferase; Chain A, domain 1 (46)

Homologous Superfamily: Toxin ADP-ribosyltransferase; Chain A, domain 1 (46)

Clostridium botulinum. Organism_taxid: 1491. (11)

1a	2c8gD00	D:44-248
1b	2c8gA00	A:44-250
1c	2c8gB00	B:45-246
1d	2c8gC00	C:44-251

(no "Pfam Domain" information available for 2C8G)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ARC3_CBDP | P15879)

molecular function
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
	GO:0016763	transferase activity, transferring pentosyl groups	Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0006471	protein ADP-ribosylation	The transfer, from NAD, of ADP-ribose to protein amino acids.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2c8g)

Biological Units
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	2c8g
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		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
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	2.4.2.-
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		Domain Information	:	XDom
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UniProtKB/Swiss-Prot
	ARC3_CBDP \| P15879	:	1g24 1gze 1gzf 1uzi 2a78 2a9k 2bov 2c89 2c8a 2c8b 2c8c 2c8d 2c8e 2c8f 2c8h

1g24	THE CRYSTAL STRUCTURE OF EXOENZYME C3 FROM CLOSTRIDIUMBOTULINUM
1gze	STRUCTURE OF THE CLOSTRIDIUM BOTULINUM C3 EXOENZYME (L177C MUTANT)
1gzf	STRUCTURE OF THE CLOSTRIDIUM BOTULINUM C3 EXOENZYME (WILD-TYPE) IN COMPLEX WITH NAD
1uzi	C3 EXOENZYME FROM CLOSTRIDIUM BOTULINUM, TETRAGONAL FORM
2a78	CRYSTAL STRUCTURE OF THE C3BOT-RALA COMPLEX REVEALS A NOVELTYPE OF ACTION OF A BACTERIAL EXOENZYME
2a9k	CRYSTAL STRUCTURE OF THE C3BOT-NAD-RALA COMPLEX REVEALS ANOVEL TYPE OF ACTION OF A BACTERIAL EXOENZYME
2bov	MOLECULAR RECOGNITION OF AN ADP-RIBOSYLATING CLOSTRIDIUM BOTULINUM C3 EXOENZYME BY RALA GTPASE
2c89	STRUCTURE OF THE PN LOOP Q182A MUTANT C3BOT1 EXOENZYME (FREE STATE, CRYSTAL FORM I)
2c8a	STRUCTURE OF THE WILD-TYPE C3BOT1 EXOENZYME (NICOTINAMIDE-BOUND STATE, CRYSTAL FORM I)
2c8b	STRUCTURE OF THE ARTT MOTIF Q212A MUTANT C3BOT1 EXOENZYME (FREE STATE, CRYSTAL FORM II)
2c8c	STRUCTURE OF THE ARTT MOTIF Q212A MUTANT C3BOT1 EXOENZYME (NAD-BOUND STATE, CRYSTAL FORM I)
2c8d	STRUCTURE OF THE ARTT MOTIF Q212A MUTANT C3BOT1 EXOENZYME (FREE STATE, CRYSTAL FORM I)
2c8e	STRUCTURE OF THE ARTT MOTIF E214N MUTANT C3BOT1 EXOENZYME (FREE STATE, CRYSTAL FORM III)
2c8f	STRUCTURE OF THE ARTT MOTIF E214N MUTANT C3BOT1 EXOENZYME (NAD-BOUND STATE, CRYSTAL FORM III)
2c8h	STRUCTURE OF THE PN LOOP Q182A MUTANT C3BOT1 EXOENZYME (NAD-BOUND STATE, CRYSTAL FORM I)

Description

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Ligands, Modified Residues, Ions (1, 3)

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Gene Ontology (7, 7)

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