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(-) Description

Title :  THE STRUCTURE OF A FAMILY 51 ARABINOFURANOSIDASE, ARAF51, FROM CLOSTRIDIUM THERMOCELLUM IN COMPLEX WITH 1,5-ALPHA-L-ARABINOTRIOSE.
 
Authors :  E. J. Taylor, N. L. Smith, J. P. Turkenburg, S. D'Souza, H. J. Gilbert, G.
Date :  23 Nov 05  (Deposition) - 14 Dec 05  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Arabinofuranosidase, Glycosidase, Xylan, Arabinan, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. J. Taylor, N. L. Smith, J. P. Turkenburg, S. D'Souza, H. J. Gilbert, G. J. Davies
Structural Insight Into The Ligand Specificity Of A Thermostable Family 51 Arabinofuranosidase, Araf51, From Clostridium Thermocellum.
Biochem. J. V. 395 31 2006
PubMed-ID: 16336192  |  Reference-DOI: 10.1042/BJ20051780

(-) Compounds

Molecule 1 - ALPHA-L-ARABINOFURANOSIDASE
    Atcc: 27405
    Chains: A, B, C, D, E, F
    EC Number: 3.2.1.55
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET 28A
    Mutation: YES
    Organism Scientific: CLOSTRIDIUM THERMOCELLUM
    Organism Taxid: 1515
    Strain: F1 / YS
    Synonym: ARABINOFURANOSIDASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 25)

Asymmetric Unit (2, 25)
No.NameCountTypeFull Name
1AHR16Ligand/IonALPHA-L-ARABINOFURANOSE
2EDO9Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1AHR3Ligand/IonALPHA-L-ARABINOFURANOSE
2EDO3Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1AHR2Ligand/IonALPHA-L-ARABINOFURANOSE
2EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1AHR3Ligand/IonALPHA-L-ARABINOFURANOSE
2EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1AHR3Ligand/IonALPHA-L-ARABINOFURANOSE
2EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 5 (2, 5)
No.NameCountTypeFull Name
1AHR3Ligand/IonALPHA-L-ARABINOFURANOSE
2EDO2Ligand/Ion1,2-ETHANEDIOL
Biological Unit 6 (2, 3)
No.NameCountTypeFull Name
1AHR2Ligand/IonALPHA-L-ARABINOFURANOSE
2EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:81 , ARG A:92 , LYS F:149binding site for residue EDO A 604
02AC2SOFTWARELYS A:149 , ASP B:81 , ARG B:92binding site for residue EDO A 605
03AC3SOFTWARETYR A:275 , TYR D:275binding site for residue EDO A 606
04AC4SOFTWARETYR B:275 , TYR C:275binding site for residue EDO B 603
05AC5SOFTWAREGLU C:80 , ASP C:81 , ARG C:92 , LYS E:149binding site for residue EDO C 604
06AC6SOFTWARELYS C:149 , ASP D:81 , ARG D:92binding site for residue EDO D 604
07AC7SOFTWARETYR E:275binding site for residue EDO E 604
08AC8SOFTWARELYS D:149 , ASP E:81 , ARG E:92binding site for residue EDO E 605
09AC9SOFTWARELYS B:149 , ASP F:81 , ARG F:92binding site for residue EDO F 603
10AD1SOFTWAREGLU A:27 , GLY A:71 , ASN A:72 , TRP A:97 , ASN A:172 , TRP A:178 , TYR A:244 , GLU A:292 , TRP A:296 , GLN A:352binding site for Poly-Saccharide residues AHR A 601 through AHR A 603
11AD2SOFTWAREGLU A:27 , GLY A:71 , ASN A:72 , TRP A:97 , ASN A:172 , TRP A:178 , TYR A:244 , GLU A:292 , TRP A:296 , GLN A:352 , GLU B:27 , GLY B:71 , ASN B:72 , TRP B:97 , ASN B:172 , TRP B:178 , TYR B:244 , TYR B:275 , GLU B:292 , TRP B:296 , GLN B:352 , TYR C:275binding site for Poly-Saccharide residues AHR B 601 through AHR B 602
12AD3SOFTWAREGLU C:27 , GLY C:71 , ASN C:72 , TRP C:97 , ASN C:172 , TRP C:178 , TYR C:244 , GLU C:292 , TRP C:296 , GLN C:352 , HOH C:704binding site for Poly-Saccharide residues AHR C 601 through AHR C 603
13AD4SOFTWAREGLU C:27 , GLY C:71 , ASN C:72 , TRP C:97 , ASN C:172 , TRP C:178 , TYR C:244 , GLU C:292 , TRP C:296 , GLN C:352 , HOH C:704 , GLU D:27 , GLY D:71 , ASN D:72 , TRP D:97 , ASN D:172 , TRP D:178 , TYR D:244 , GLU D:292 , TRP D:296 , GLN D:352 , HOH D:712binding site for Poly-Saccharide residues AHR D 601 through AHR D 603
14AD5SOFTWAREGLU D:27 , GLY D:71 , ASN D:72 , TRP D:97 , ASN D:172 , TRP D:178 , TYR D:244 , GLU D:292 , TRP D:296 , GLN D:352 , HOH D:712 , GLU E:27 , GLY E:71 , ASN E:72 , TRP E:97 , ASN E:172 , TRP E:178 , TYR E:244 , GLU E:292 , TRP E:296 , GLN E:352binding site for Poly-Saccharide residues AHR E 601 through AHR E 603
15AD6SOFTWARELYS B:149 , GLU E:27 , GLY E:71 , ASN E:72 , TRP E:97 , ASN E:172 , TRP E:178 , TYR E:244 , GLU E:292 , TRP E:296 , GLN E:352 , GLU F:27 , GLY F:71 , ASN F:72 , ASP F:81 , ARG F:92 , TRP F:97 , ASN F:172 , TRP F:178 , TYR F:244 , GLU F:292 , TRP F:296 , GLN F:352binding site for Poly-Saccharide residues AHR F 601 through AHR F 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2C7F)

(-) Cis Peptide Bonds  (43, 43)

Asymmetric Unit
No.Residues
1Tyr A:68 -Pro A:69
2Gly A:70 -Gly A:71
3Phe A:221 -Pro A:222
4Met A:307 -Gln A:308
5Ala A:351 -Gln A:352
6Tyr B:68 -Pro B:69
7Gly B:70 -Gly B:71
8Phe B:221 -Pro B:222
9Ala B:351 -Gln B:352
10Asp B:478 -Lys B:479
11Ser B:480 -Ser B:481
12Tyr C:68 -Pro C:69
13Gly C:70 -Gly C:71
14Phe C:221 -Pro C:222
15Ala C:351 -Gln C:352
16Gly C:366 -Gly C:367
17Gly C:469 -Glu C:470
18Asp C:478 -Lys C:479
19Ser C:480 -Ser C:481
20Asp C:483 -Asp C:484
21Gly C:485 -Ile C:486
22Tyr D:68 -Pro D:69
23Gly D:70 -Gly D:71
24Phe D:221 -Pro D:222
25Ala D:351 -Gln D:352
26Gly D:366 -Gly D:367
27Met D:445 -Lys D:446
28Asp D:447 -Tyr D:448
29Gly D:469 -Glu D:470
30Asp D:484 -Gly D:485
31Tyr E:68 -Pro E:69
32Gly E:70 -Gly E:71
33Phe E:221 -Pro E:222
34Ala E:351 -Gln E:352
35Gly E:366 -Gly E:367
36Asn E:431 -Ile E:432
37Gly E:469 -Glu E:470
38Asp E:478 -Lys E:479
39Tyr F:68 -Pro F:69
40Gly F:70 -Gly F:71
41Phe F:221 -Pro F:222
42Ala F:351 -Gln F:352
43Gly F:469 -Glu F:470

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2C7F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2C7F)

(-) Exons   (0, 0)

(no "Exon" information available for 2C7F)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:496
 aligned with IABF_CLOTH | A3DIH0 from UniProtKB/Swiss-Prot  Length:503

    Alignment length:501
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501 
           IABF_CLOTH     2 KKARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNEMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGMKDYRLLEHIVLEHQDLKIRNSVNGEEVYPKNSDKSSFDDGILTSMLRRASWNVIRIG 502
               SCOP domains d2c7fa1        d2c7fa2 A:17-386 Alpha-L-arabinofuranosidase, catalytic domain                                                                                                                                                                                                                                                                                                                    d2c7fa1 A:2-16,A:387-502 Alpha-l-arabinofuranosidase                                                                 SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeee.hhhhheee.........................hhhhhhhhhhhh..eeee....hhhhhhhhhhh.hhhhh..eee....eee.....hhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh...hhhhhhhhhh.........eeee.............hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhh.................hhhhhhhhhhhhhhhhhh...eeeeeee......................hhhhhhhhhhhh..eee..eee..ee.......ee..eeeeeee....eeeeeee.......eeeeeee...---.eeeeeee..................ee...--....eeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c7f A   2 KKARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNAMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGM---RLLEHIVLEHQDLKIRNSVNGEEVYPKNSDK--FDDGILTSMLRRASWNVIRIG 502
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   |   451       461       471       | -|      491       501 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     445 449                           479  |                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          482                    


Chain B from PDB  Type:PROTEIN  Length:497
 aligned with IABF_CLOTH | A3DIH0 from UniProtKB/Swiss-Prot  Length:503

    Alignment length:500
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502
           IABF_CLOTH     3 KARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNEMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGMKDYRLLEHIVLEHQDLKIRNSVNGEEVYPKNSDKSSFDDGILTSMLRRASWNVIRIG 502
               SCOP domains d2c7fb1       d2c7fb2 B:17-386 Alpha-L-arabinofuranosidase, catalytic domain                                                                                                                                                                                                                                                                                                                    d2c7fb1 B:3-16,B:387-502 Alpha-l-arabinofuranosidase                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....eeee.hhhhheee.........................hhhhhhhhhhhh..eeee....hhhhhhhhhhh.hhhhh..eee....eee.....hhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh...hhhhhhhhhh.........eeee.............hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhh.................hhhhhhhhhhhhhhhhhh...eeeeeee........ee........ee..hhhhhhhhhhhh..eee..eee..ee.......ee..eeeeeee....eeeeeee.........eeeee...---.eeeeeee..................ee.....ee..eeee......eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c7f B   3 KARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNAMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGM---RLLEHIVLEHQDLKIRNSVNGEEVYPKNSDKSSFDDGILTSMLRRASWNVIRIG 502
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442  |   |452       462       472       482       492       502
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    445 449                                                     


Chain C from PDB  Type:PROTEIN  Length:496
 aligned with IABF_CLOTH | A3DIH0 from UniProtKB/Swiss-Prot  Length:503

    Alignment length:499
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493         
           IABF_CLOTH     4 ARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNEMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGMKDYRLLEHIVLEHQDLKIRNSVNGEEVYPKNSDKSSFDDGILTSMLRRASWNVIRIG 502
               SCOP domains d2c7fc1      d2c7fc2 C:17-386 Alpha-L-arabinofuranosidase, catalytic domain                                                                                                                                                                                                                                                                                                                    d2c7fc1 C:4-16,C:387-502 Alpha-l-arabinofuranosidase                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeee.hhhhheee.........................hhhhhhhhhhhh..eeee..hhhhhhhhhhhhh.hhhhh..eee....eee.....hhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh...hhhhhhhhhh.........eeee.............hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhhh................hhhhhhhhhhhhhhhhhh...eeeeeee........ee........ee..hhhhhhhhhhhh..eee..eee..ee.......ee..eeeeeee....eeeeeee.......eeeeeee...---.eeeeeee..................ee..........eeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c7f C   4 ARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNAMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGM---RLLEHIVLEHQDLKIRNSVNGEEVYPKNSDKSSFDDGILTSMLRRASWNVIRIG 502
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443 |   | 453       463       473       483       493         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   445 449                                                     


Chain D from PDB  Type:PROTEIN  Length:499
 aligned with IABF_CLOTH | A3DIH0 from UniProtKB/Swiss-Prot  Length:503

    Alignment length:499
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493         
           IABF_CLOTH     4 ARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNEMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGMKDYRLLEHIVLEHQDLKIRNSVNGEEVYPKNSDKSSFDDGILTSMLRRASWNVIRIG 502
               SCOP domains d2c7fd1      d2c7fd2 D:17-386 Alpha-L-arabinofuranosidase, catalytic domain                                                                                                                                                                                                                                                                                                                    d2c7fd1 D:4-16,D:387-502 Alpha-l-arabinofuranosidase                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeee.hhhhheee.........................hhhhhhhhhhhh..eeee..hhhhhhhhhhhhh.hhhhh..eee....eee.....hhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh...hhhhhhhhhh.........eeee.............hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhhh................hhhhhhhhhhhhhhhhhh...eeeeeee........ee........ee..hhhhhhhhhhhh..eee...ee..ee.......ee..eeeeeee....eeeeeee.......eeeeeee.......eeeeeee..................ee...eee...eeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c7f D   4 ARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNAMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGMKDYRLLEHIVLEHQDLKIRNSVNGEEVYPKNSDKSSFDDGILTSMLRRASWNVIRIG 502
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493         


Chain E from PDB  Type:PROTEIN  Length:492
 aligned with IABF_CLOTH | A3DIH0 from UniProtKB/Swiss-Prot  Length:503

    Alignment length:500
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502
           IABF_CLOTH     3 KARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNEMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGMKDYRLLEHIVLEHQDLKIRNSVNGEEVYPKNSDKSSFDDGILTSMLRRASWNVIRIG 502
               SCOP domains d2c7fe1       d2c7fe2 E:17-386 Alpha-L-arabinofuranosidase, catalytic domain                                                                                                                                                                                                                                                                                                                    d2c7fe1 E:3-16,E:387-502 Alpha-l-arabinofuranosidase                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....eeee.hhhhheee.........................hhhhhhhhhhhh..eeee..hhhhhhhhhhhhh.hhhhh..eee....eee.....hhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh...hhhhhhhhhh.........eeee.............hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhhh................hhhhhhhhhhhhhhhhhh...eeeeeee........ee........ee..hhhhhhhhhhhh..eee..eee..ee.......ee..eeeee.e....eeeeeee.......eeeeeee..----.eeeeeee..................ee.....----.eeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c7f E   3 KARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNAMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRG----RLLEHIVLEHQDLKIRNSVNGEEVYPKNSDKSS----ILTSMLRRASWNVIRIG 502
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442 |    |452       462       472        |-   |   492       502
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   444  449                             481  486                


Chain F from PDB  Type:PROTEIN  Length:496
 aligned with IABF_CLOTH | A3DIH0 from UniProtKB/Swiss-Prot  Length:503

    Alignment length:499
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492         
           IABF_CLOTH     3 KARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNEMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGMKDYRLLEHIVLEHQDLKIRNSVNGEEVYPKNSDKSSFDDGILTSMLRRASWNVIRI 501
               SCOP domains d2c7ff1       d2c7ff2 F:17-386 Alpha-L-arabinofuranosidase, catalytic domain                                                                                                                                                                                                                                                                                                                    d2c7ff1 F:3-16,F:387-501 Alpha-l-arabinofuranosidase                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....eeee.hhhhheee.........................hhhhhhhhhhhh..eeee..hhhhhhhhhhhhh.hhhhh..eee....eee.....hhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh...hhhhhhhhhh.........eeee.............hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhh.................hhhhhhhhhhhhhhhhhh...eeeeeee........ee........ee..hhhhhhhhhhhh..eee..ee...ee.......ee..eeeeeee....eeeeeee.......eeeeeee....--...eeeee..................ee...-.ee..ee..ee....eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c7f F   3 KARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNAMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKENDTADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNNEDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLAQLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDTSKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGMK--RLLEHIVLEHQDLKIRNSVNGEEVYPKNSDK-SFDDGILTSMLRRASWNVIRI 501
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442   |  |452       462       472      |482       492         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     446  |                           479 |                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        449                             481
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2C7F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2C7F)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (IABF_CLOTH | A3DIH0)
molecular function
    GO:0046556    alpha-L-arabinofuranosidase activity    Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
biological process
    GO:0046373    L-arabinose metabolic process    The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc.
    GO:0031222    arabinan catabolic process    The chemical reactions and pathways resulting in the breakdown of arabinan, a polysaccharide composed of arabinose residues.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IABF_CLOTH | A3DIH0: 2c8n

(-) Related Entries Specified in the PDB File

2c8n THE STRUCTURE OF A FAMILY 51 ARABINOFURANOSIDASE, ARAF51, FROM CLOSTRIDIUM THERMOCELLUM IN COMPLEX WITH 1,3-LINKED ARABINOSIDE OF XYLOBIOSE.