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2C7F
Asym. Unit
Info
Asym.Unit (459 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (82 KB)
Biol.Unit 5 (80 KB)
Biol.Unit 6 (82 KB)
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(1)
Title
:
THE STRUCTURE OF A FAMILY 51 ARABINOFURANOSIDASE, ARAF51, FROM CLOSTRIDIUM THERMOCELLUM IN COMPLEX WITH 1,5-ALPHA-L-ARABINOTRIOSE.
Authors
:
E. J. Taylor, N. L. Smith, J. P. Turkenburg, S. D'Souza, H. J. Gilbert, G.
Date
:
23 Nov 05 (Deposition) - 14 Dec 05 (Release) - 14 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Arabinofuranosidase, Glycosidase, Xylan, Arabinan, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. J. Taylor, N. L. Smith, J. P. Turkenburg, S. D'Souza, H. J. Gilbert, G. J. Davies
Structural Insight Into The Ligand Specificity Of A Thermostable Family 51 Arabinofuranosidase, Araf51, From Clostridium Thermocellum.
Biochem. J. V. 395 31 2006
[
close entry info
]
Hetero Components
(2, 25)
Info
All Hetero Components
1a: ALPHA-L-ARABINOFURANOSE (AHRa)
1b: ALPHA-L-ARABINOFURANOSE (AHRb)
1c: ALPHA-L-ARABINOFURANOSE (AHRc)
1d: ALPHA-L-ARABINOFURANOSE (AHRd)
1e: ALPHA-L-ARABINOFURANOSE (AHRe)
1f: ALPHA-L-ARABINOFURANOSE (AHRf)
1g: ALPHA-L-ARABINOFURANOSE (AHRg)
1h: ALPHA-L-ARABINOFURANOSE (AHRh)
1i: ALPHA-L-ARABINOFURANOSE (AHRi)
1j: ALPHA-L-ARABINOFURANOSE (AHRj)
1k: ALPHA-L-ARABINOFURANOSE (AHRk)
1l: ALPHA-L-ARABINOFURANOSE (AHRl)
1m: ALPHA-L-ARABINOFURANOSE (AHRm)
1n: ALPHA-L-ARABINOFURANOSE (AHRn)
1o: ALPHA-L-ARABINOFURANOSE (AHRo)
1p: ALPHA-L-ARABINOFURANOSE (AHRp)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AHR
16
Ligand/Ion
ALPHA-L-ARABINOFURANOSE
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
[
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]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:81 , ARG A:92 , LYS F:149
binding site for residue EDO A 604
02
AC2
SOFTWARE
LYS A:149 , ASP B:81 , ARG B:92
binding site for residue EDO A 605
03
AC3
SOFTWARE
TYR A:275 , TYR D:275
binding site for residue EDO A 606
04
AC4
SOFTWARE
TYR B:275 , TYR C:275
binding site for residue EDO B 603
05
AC5
SOFTWARE
GLU C:80 , ASP C:81 , ARG C:92 , LYS E:149
binding site for residue EDO C 604
06
AC6
SOFTWARE
LYS C:149 , ASP D:81 , ARG D:92
binding site for residue EDO D 604
07
AC7
SOFTWARE
TYR E:275
binding site for residue EDO E 604
08
AC8
SOFTWARE
LYS D:149 , ASP E:81 , ARG E:92
binding site for residue EDO E 605
09
AC9
SOFTWARE
LYS B:149 , ASP F:81 , ARG F:92
binding site for residue EDO F 603
10
AD1
SOFTWARE
GLU A:27 , GLY A:71 , ASN A:72 , TRP A:97 , ASN A:172 , TRP A:178 , TYR A:244 , GLU A:292 , TRP A:296 , GLN A:352
binding site for Poly-Saccharide residues AHR A 601 through AHR A 603
11
AD2
SOFTWARE
GLU A:27 , GLY A:71 , ASN A:72 , TRP A:97 , ASN A:172 , TRP A:178 , TYR A:244 , GLU A:292 , TRP A:296 , GLN A:352 , GLU B:27 , GLY B:71 , ASN B:72 , TRP B:97 , ASN B:172 , TRP B:178 , TYR B:244 , TYR B:275 , GLU B:292 , TRP B:296 , GLN B:352 , TYR C:275
binding site for Poly-Saccharide residues AHR B 601 through AHR B 602
12
AD3
SOFTWARE
GLU C:27 , GLY C:71 , ASN C:72 , TRP C:97 , ASN C:172 , TRP C:178 , TYR C:244 , GLU C:292 , TRP C:296 , GLN C:352 , HOH C:704
binding site for Poly-Saccharide residues AHR C 601 through AHR C 603
13
AD4
SOFTWARE
GLU C:27 , GLY C:71 , ASN C:72 , TRP C:97 , ASN C:172 , TRP C:178 , TYR C:244 , GLU C:292 , TRP C:296 , GLN C:352 , HOH C:704 , GLU D:27 , GLY D:71 , ASN D:72 , TRP D:97 , ASN D:172 , TRP D:178 , TYR D:244 , GLU D:292 , TRP D:296 , GLN D:352 , HOH D:712
binding site for Poly-Saccharide residues AHR D 601 through AHR D 603
14
AD5
SOFTWARE
GLU D:27 , GLY D:71 , ASN D:72 , TRP D:97 , ASN D:172 , TRP D:178 , TYR D:244 , GLU D:292 , TRP D:296 , GLN D:352 , HOH D:712 , GLU E:27 , GLY E:71 , ASN E:72 , TRP E:97 , ASN E:172 , TRP E:178 , TYR E:244 , GLU E:292 , TRP E:296 , GLN E:352
binding site for Poly-Saccharide residues AHR E 601 through AHR E 603
15
AD6
SOFTWARE
LYS B:149 , GLU E:27 , GLY E:71 , ASN E:72 , TRP E:97 , ASN E:172 , TRP E:178 , TYR E:244 , GLU E:292 , TRP E:296 , GLN E:352 , GLU F:27 , GLY F:71 , ASN F:72 , ASP F:81 , ARG F:92 , TRP F:97 , ASN F:172 , TRP F:178 , TYR F:244 , GLU F:292 , TRP F:296 , GLN F:352
binding site for Poly-Saccharide residues AHR F 601 through AHR F 602
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2c7fa1 (A:2-16,A:387-502)
1b: SCOP_d2c7fe1 (E:3-16,E:387-502)
1c: SCOP_d2c7ff1 (F:3-16,F:387-501)
1d: SCOP_d2c7fb1 (B:3-16,B:387-502)
1e: SCOP_d2c7fc1 (C:4-16,C:387-502)
1f: SCOP_d2c7fd1 (D:4-16,D:387-502)
2a: SCOP_d2c7fa2 (A:17-386)
2b: SCOP_d2c7fe2 (E:17-386)
2c: SCOP_d2c7ff2 (F:17-386)
2d: SCOP_d2c7fb2 (B:17-386)
2e: SCOP_d2c7fc2 (C:17-386)
2f: SCOP_d2c7fd2 (D:17-386)
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Classes
(
)
(
)
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(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
(30)
Protein domain
:
Alpha-l-arabinofuranosidase
(6)
Clostridium thermocellum [TaxId: 1515]
(2)
1a
d2c7fa1
A:2-16,A:387-502
1b
d2c7fe1
E:3-16,E:387-502
1c
d2c7ff1
F:3-16,F:387-501
1d
d2c7fb1
B:3-16,B:387-502
1e
d2c7fc1
C:4-16,C:387-502
1f
d2c7fd1
D:4-16,D:387-502
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Alpha-L-arabinofuranosidase, catalytic domain
(6)
Clostridium thermocellum [TaxId: 1515]
(2)
2a
d2c7fa2
A:17-386
2b
d2c7fe2
E:17-386
2c
d2c7ff2
F:17-386
2d
d2c7fb2
B:17-386
2e
d2c7fc2
C:17-386
2f
d2c7fd2
D:17-386
[
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]
CATH Domains
(0, 0)
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Pfam Domains
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