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Title :  MOLECULAR STRUCTURE OF FD FILAMENTOUS BACTERIOPHAGE REFINED WITH RESPECT TO X-RAY FIBRE DIFFRACTION AND SOLID-STATE NMR DATA
 
Authors :  D. A. Marvin, L. C. Welsh, M. F. Symmons, W. R. P. Scott, S. K. Straus
Date :  08 Sep 05  (Deposition) - 14 Dec 05  (Release) - 13 Jul 11  (Revision)
Method :  SOLID-STATE NMR
Resolution :  NOT APPLICABLE
Chains :  Asym. Unit :  A
Keywords :  Viral Protein, Filamentous Bacteriophage, Alpha-Helix, Membrane Proteins, Structural Protein, Transmembrane, Helical Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Marvin, L. C. Welsh, M. F. Symmons, W. R. P. Scott, S. K. Straus
Molecular Structure Of Fd (F1, M13) Filamentous Bacteriophage Refined With Respect To X-Ray Fibre Diffraction And Solid-State Nmr Data Supports Specific Models Of Phage Assembly At The Bacterial Membrane.
J. Mol. Biol. V. 355 294 2006
PubMed-ID: 16300790  |  Reference-DOI: 10.1016/J.JMB.2005.10.048
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COAT PROTEIN B
    Atcc: 15669-B2
    Chains: A
    Engineered: YES
    Mutation: YES
    Organism Scientific: ENTEROBACTERIA PHAGE FD
    Organism Taxid: 10864
    Other Details: H. HOFFMANN-BERLING Z. NATURFORSCH. SECT. B BIOSCI. 18: 876, 1963
    Synonym: FD GENE 8 COAT PROTEIN, MAJOR COAT PROTEIN

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Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:50
 aligned with CAPSD_BPFD | P69539 from UniProtKB/Swiss-Prot  Length:73

    Alignment length:50
                                    33        43        53        63        73
            CAPSD_BPFD   24 AEGDDPAKAAFDSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTSKAS 73
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains 2c0xA00 A:1-50  [code=1.20.5.80, no name defined]  CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  2c0x A  1 AEGDDPAKAAFDSLQASATEMIGYAWAMVVVIVGATIGIKLFKKFTSKAS 50
                                    10        20        30        40        50
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Class: Mainly Alpha (13335)

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(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (CAPSD_BPFD | P69539)
cellular component
    GO:0019029    helical viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAPSD_BPFD | P69539: 1fdm 1ifd 1ifi 1ifj 1mzt 2c0w 2hi5

(-) Related Entries Specified in the PDB File

2c0w MOLECULAR STRUCTURE OF FD FILAMENTOUS BACTERIOPHAGE REFINED WITH RESPECT TO X-RAY FIBRE DIFFRACTION