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(-) Description

Title :  FD MAJOR COAT PROTEIN IN SDS MICELLES, NMR, 20 STRUCTURES
 
Authors :  F. C. L. Almeida, S. J. Opella
Date :  28 May 97  (Deposition) - 17 Sep 97  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Fd Coat Protein, Membrane Protein, Micelles, Coat Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. C. Almeida, S. J. Opella
Fd Coat Protein Structure In Membrane Environments: Structural Dynamics Of The Loop Between The Hydrophobic Trans-Membrane Helix And The Amphipathic In-Plane Helix.
J. Mol. Biol. V. 270 481 1997
PubMed-ID: 9237913  |  Reference-DOI: 10.1006/JMBI.1997.1114
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FD MAJOR COAT PROTEIN
    ChainsA
    Organism ScientificENTEROBACTERIA PHAGE FD
    Organism Taxid10864
    Other DetailsIN SDS MICELLES
    SynonymFD COAT PROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1FDM)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:50
 aligned with CAPSD_BPFD | P69539 from UniProtKB/Swiss-Prot  Length:73

    Alignment length:50
                                    33        43        53        63        73
            CAPSD_BPFD   24 AEGDDPAKAAFDSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTSKAS 73
               SCOP domains d1fdma_ A:                                         SCOP domains
               CATH domains 1fdmA00 A:1-50  [code=1.20.5.80, no name defined]  CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhh...........hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  1fdm A  1 AEGDDPAKAAFDSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTSKAS 50
                                    10        20        30        40        50

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (6, 6)

NMR Structure(hide GO term definitions)
Chain A   (CAPSD_BPFD | P69539)
cellular component
    GO:0019029    helical viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        CAPSD_BPFD | P695391ifd 1ifi 1ifj 1mzt 2c0w 2c0x 2hi5

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