2C0M - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   APO FORM OF THE TPR DOMAIN OF THE PEX5P RECEPTOR

Authors :   W. A. Stanley, P. Kursula, M. Wilmanns

Date :   05 Sep 05 (Deposition) - 15 Nov 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: F  (1x)

Keywords :   Transport Protein, Tpr Repeat, Transport, Import Receptor Complex, Peroxisome, Disease Mutation, Protein Transport, Zellweger Syndrome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. A. Stanley, F. V. Filipp, P. Kursula, N. Schuller, R. Erdmann, W. Schliebs, M. Sattler, M. Wilmanns
Recognition Of A Functional Peroxisome Type 1 Target By The Dynamic Import Receptor Pex5P.
Mol. Cell V. 24 653 2006
PubMed-ID: 17157249 | Reference-DOI: 10.1016/J.MOLCEL.2006.10.024

Molecule 1 - PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR
	Chains	:	A, B, C, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET24D
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	TPR REPEAT DOMAIN, RESIDUES 284-602
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PEX5P, PEROXISMORE RECEPTOR 1, PEROXIN-5, PEROXISOMAL C-TERMINAL TARGETING SIGNAL IMPORT RECEPTOR, PTS1-BP, PTS1 RECEPTOR

		1	2	3	4
Asymmetric Unit	:	A	B	C	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				F

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2C0M)

(no "Site" information available for 2C0M)

(no "SS Bond" information available for 2C0M)

(no "Cis Peptide Bond" information available for 2C0M)

Asymmetric Unit (2, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_007543	N	526	K	PEX5_HUMAN	Disease (PBD2B)	61752138	A/B/C/F	N	489	K
2	UniProt	VAR_031328	S	600	W	PEX5_HUMAN	Disease (PBD2B)	---	A/B/C/F	S	563	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_007543	N	526	K	PEX5_HUMAN	Disease (PBD2B)	61752138	A	N	489	K
2	UniProt	VAR_031328	S	600	W	PEX5_HUMAN	Disease (PBD2B)	---	A	S	563	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_007543	N	526	K	PEX5_HUMAN	Disease (PBD2B)	61752138	B	N	489	K
2	UniProt	VAR_031328	S	600	W	PEX5_HUMAN	Disease (PBD2B)	---	B	S	563	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_007543	N	526	K	PEX5_HUMAN	Disease (PBD2B)	61752138	C	N	489	K
2	UniProt	VAR_031328	S	600	W	PEX5_HUMAN	Disease (PBD2B)	---	C	S	563	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_007543	N	526	K	PEX5_HUMAN	Disease (PBD2B)	61752138	F	N	489	K
2	UniProt	VAR_031328	S	600	W	PEX5_HUMAN	Disease (PBD2B)	---	F	S	563	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TPR	PS50005	TPR repeat profile.	PEX5_HUMAN	335-368 369-402 488-521 522-555 556-589	20	A:298-331 B:298-331 C:298-331 F:298-331 A:332-365 B:332-365 C:332-365 F:332-365 A:451-484 B:451-484 C:451-484 F:451-484 A:485-518 B:485-518 C:485-518 F:485-518 A:519-552 B:519-552 C:519-552 F:519-552
2	TPR_REGION	PS50293	TPR repeat region circular profile.	PEX5_HUMAN	335-589	4	A:298-552 B:298-552 C:298-552 F:298-552

Biological Unit 1 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TPR	PS50005	TPR repeat profile.	PEX5_HUMAN	335-368 369-402 488-521 522-555 556-589	5	A:298-331 - - - A:332-365 - - - A:451-484 - - - A:485-518 - - - A:519-552 - - -
2	TPR_REGION	PS50293	TPR repeat region circular profile.	PEX5_HUMAN	335-589	1	A:298-552 - - -

Biological Unit 2 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TPR	PS50005	TPR repeat profile.	PEX5_HUMAN	335-368 369-402 488-521 522-555 556-589	5	- B:298-331 - - - B:332-365 - - - B:451-484 - - - B:485-518 - - - B:519-552 - -
2	TPR_REGION	PS50293	TPR repeat region circular profile.	PEX5_HUMAN	335-589	1	- B:298-552 - -

Biological Unit 3 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TPR	PS50005	TPR repeat profile.	PEX5_HUMAN	335-368 369-402 488-521 522-555 556-589	5	- - C:298-331 - - - C:332-365 - - - C:451-484 - - - C:485-518 - - - C:519-552 -
2	TPR_REGION	PS50293	TPR repeat region circular profile.	PEX5_HUMAN	335-589	1	- - C:298-552 -

Biological Unit 4 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TPR	PS50005	TPR repeat profile.	PEX5_HUMAN	335-368 369-402 488-521 522-555 556-589	5	- - - F:298-331 - - - F:332-365 - - - F:451-484 - - - F:485-518 - - - F:519-552
2	TPR_REGION	PS50293	TPR repeat region circular profile.	PEX5_HUMAN	335-589	1	- - - F:298-552

(no "Exon" information available for 2C0M)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:297
 aligned with PEX5_HUMAN | P50542 from UniProtKB/Swiss-Prot  Length:639

    Alignment length:319
                                   330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630         
           PEX5_HUMAN   321 DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 639
               SCOP domains d2c0ma_ A: automated matches                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2c0mA00 A:284-602  [code=1.25.40.10, no name defined]                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....----------------------hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-------------------------------------------------------------------------W--------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------TPR  PDB: A:298-331               TPR  PDB: A:332-365               -------------------------------------------------------------------------------------TPR  PDB: A:451-484               TPR  PDB: A:485-518               TPR  PDB: A:519-552               -------------------------------------------------- PROSITE (1)
                PROSITE (2) --------------TPR_REGION  PDB: A:298-552 UniProt: 335-589                                                                                                                                                                                                                    -------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c0m A 284 DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP----------------------DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 602
                                   293       303       313       323       333       343       353       363       373       383       393       403 |       -         -    |  433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593         
                                                                                                                                                   405                    428

Chain B from PDB  Type:PROTEIN  Length:297
 aligned with PEX5_HUMAN | P50542 from UniProtKB/Swiss-Prot  Length:639

    Alignment length:319
                                   330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630         
           PEX5_HUMAN   321 DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 639
               SCOP domains d2c0mb_ B: automated matches                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..........----------------------hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-------------------------------------------------------------------------W--------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------TPR  PDB: B:298-331               TPR  PDB: B:332-365               -------------------------------------------------------------------------------------TPR  PDB: B:451-484               TPR  PDB: B:485-518               TPR  PDB: B:519-552               -------------------------------------------------- PROSITE (1)
                PROSITE (2) --------------TPR_REGION  PDB: B:298-552 UniProt: 335-589                                                                                                                                                                                                                    -------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c0m B 284 DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP----------------------DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 602
                                   293       303       313       323       333       343       353       363       373       383       393       403 |       -         -    |  433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593         
                                                                                                                                                   405                    428

Chain C from PDB  Type:PROTEIN  Length:302
 aligned with PEX5_HUMAN | P50542 from UniProtKB/Swiss-Prot  Length:639

    Alignment length:318
                                   331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631        
           PEX5_HUMAN   322 KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 639
               SCOP domains d2c0mc_ C: automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhh----------------........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-------------------------------------------------------------------------W--------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------TPR  PDB: C:298-331               TPR  PDB: C:332-365               -------------------------------------------------------------------------------------TPR  PDB: C:451-484               TPR  PDB: C:485-518               TPR  PDB: C:519-552               -------------------------------------------------- PROSITE (1)
                PROSITE (2) -------------TPR_REGION  PDB: C:298-552 UniProt: 335-589                                                                                                                                                                                                                    -------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2c0m C 285 KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV----------------RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 602
                                   294       304       314       324       334       344       354       364       374       384       394        |-         -     | 424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594        
                                                                                                                                                403              420

Chain F from PDB  Type:PROTEIN  Length:302
 aligned with PEX5_HUMAN | P50542 from UniProtKB/Swiss-Prot  Length:639

    Alignment length:318
                                   331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631        
           PEX5_HUMAN   322 KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 639
               SCOP domains d2c0mf_ F: automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhh----------------........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-------------------------------------------------------------------------W--------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------TPR  PDB: F:298-331               TPR  PDB: F:332-365               -------------------------------------------------------------------------------------TPR  PDB: F:451-484               TPR  PDB: F:485-518               TPR  PDB: F:519-552               -------------------------------------------------- PROSITE (1)
                PROSITE (2) -------------TPR_REGION  PDB: F:298-552 UniProt: 335-589                                                                                                                                                                                                                    -------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2c0m F 285 KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV----------------RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 602
                                   294       304       314       324       334       344       354       364       374       384       394        |-         -     | 424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594        
                                                                                                                                                403              420

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: All alpha proteins (14657)

Fold: alpha-alpha superhelix (690)

Superfamily: TPR-like (83)

Family: Tetratricopeptide repeat (TPR) (47)

Protein domain: automated matches (11)

Human (Homo sapiens) [TaxId: 9606] (8)

1a	d2c0ma_	A:
1b	d2c0mb_	B:
1c	d2c0mc_	C:
1d	d2c0mf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Alpha Horseshoe (399)

Topology: Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat (320)

Homologous Superfamily: [code=1.25.40.10, no name defined] (42)

Human (Homo sapiens) (17)

2c0mA00

A:284-602

(no "Pfam Domain" information available for 2C0M)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,F (PEX5_HUMAN | P50542)

molecular function
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
	GO:0005052	peroxisome matrix targeting signal-1 binding	Interacting selectively and non-covalently with a type 1 peroxisome targeting signal, a tripeptide with the consensus sequence (S/A/C)-(K/R/H)-L.
	GO:0000268	peroxisome targeting sequence binding	Interacting selectively and non-covalently with a peroxisomal targeting sequence, any of several sequences of amino acids within a protein that can act as a signal for the localization of the protein into the peroxisome.
	GO:0008022	protein C-terminus binding	Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
	GO:0047485	protein N-terminus binding	Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0031267	small GTPase binding	Interacting selectively and non-covalently with a small monomeric GTPase.
biological process
	GO:1901094	negative regulation of protein homotetramerization	Any process that stops, prevents or reduces the frequency, rate or extent of protein homotetramerization.
	GO:0016558	protein import into peroxisome matrix	The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported. The cargo protein is then released into the peroxisome matrix.
	GO:0016560	protein import into peroxisome matrix, docking	The process in which a complex formed of a peroxisome targeting sequence (PTS) receptor bound to a PTS-bearing protein docks with translocation machinery in the peroxisomal membrane.
	GO:0016561	protein import into peroxisome matrix, translocation	The process in which proteins are moved across the peroxisomal membrane into the matrix. It is likely that the peroxisome targeting sequence receptor remains associated with cargo proteins during translocation.
	GO:0045046	protein import into peroxisome membrane	The targeting of proteins into the peroxisomal membrane. The process is not well understood, but both signals and mechanism differ from those involved in peroxisomal matrix protein import.
	GO:0006625	protein targeting to peroxisome	The process of directing proteins towards the peroxisome, usually using signals contained within the protein.
	GO:0051262	protein tetramerization	The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005782	peroxisomal matrix	The volume contained within the membranes of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase.
	GO:0005778	peroxisomal membrane	The lipid bilayer surrounding a peroxisome.
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.
	GO:0043234	protein complex	A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2c0m)

	Sites
(no "Sites" information available for 2c0m)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2c0m)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2c0m
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	PEX5_HUMAN \| P50542
		Comparative Protein Structure Models	:	ModBase
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	202370
		Disease Information	:	OMIM

Access by GenAge ID
	0058
		Age Related Information	:	GenAge
	0076
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
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Access by UniProt ID/Accession number
	PEX5_HUMAN \| P50542
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	PEX5_HUMAN \| P50542	:	1fch 2c0l 2j9q 2w84 3r9a 4bxu 4kxk 4kyo

1fch	CRYSTAL STRUCTURE OF THE PTS1 COMPLEXED TO THE TPR REGIONOF HUMAN PEX5
2c0l	TPR DOMAIN OF HUMAN PEX5P IN COMPLEX WITH HUMAN MSCP2

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 8)

PROSITE Motifs (2, 24)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (24, 24)

Visualization

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Still Images

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Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File