3R9A - JenaLib

Asymmetric/Biological Unit (51, 102)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_060547	T	9	N	SPYA_HUMAN	Polymorphism	115014558	A/C	T	9	N
02	UniProt	VAR_000587	P	11	L	SPYA_HUMAN	Polymorphism	34116584	A/C	P	11	L
03	UniProt	VAR_048236	N	22	S	SPYA_HUMAN	Polymorphism	34885252	A/C	N	22	S
04	UniProt	VAR_074582	R	36	C	SPYA_HUMAN	Disease (HP1)	180177157	A/C	R	36	C
05	UniProt	VAR_074583	G	41	E	SPYA_HUMAN	Disease (HP1)	180177168	A/C	G	41	E
06	UniProt	VAR_000588	G	41	R	SPYA_HUMAN	Disease (HP1)	121908523	A/C	G	41	R
07	UniProt	VAR_010969	G	41	V	SPYA_HUMAN	Disease (HP1)	180177168	A/C	G	41	V
08	UniProt	VAR_074584	G	47	R	SPYA_HUMAN	Disease (HP1)	180177173	A/C	G	47	R
09	UniProt	VAR_008878	G	82	E	SPYA_HUMAN	Disease (HP1)	121908522	A/C	G	82	E
10	UniProt	VAR_060548	G	82	R	SPYA_HUMAN	Disease (HP1)	180177185	A/C	G	82	R
11	UniProt	VAR_060549	W	108	R	SPYA_HUMAN	Disease (HP1)	180177197	A/C	W	108	R
12	UniProt	VAR_060550	A	112	D	SPYA_HUMAN	Disease (HP1)	796052061	A/C	A	112	D
13	UniProt	VAR_010971	G	116	R	SPYA_HUMAN	Disease (HP1)	180177207	A/C	G	116	R
14	UniProt	VAR_074585	L	150	P	SPYA_HUMAN	Disease (HP1)	180177222	A/C	L	150	P
15	UniProt	VAR_000589	F	152	I	SPYA_HUMAN	Disease (HP1)	121908524	A/C	F	152	I
16	UniProt	VAR_060552	L	153	V	SPYA_HUMAN	Disease (HP1)	180177223	A/C	L	153	V
17	UniProt	VAR_010972	G	156	R	SPYA_HUMAN	Disease (HP1)	121908530	A/C	G	156	R
18	UniProt	VAR_060553	S	158	L	SPYA_HUMAN	Disease (HP1)	180177225	A/C	S	158	L
19	UniProt	VAR_074586	G	161	C	SPYA_HUMAN	Disease (HP1)	180177227	A/C	G	161	C
20	UniProt	VAR_060554	G	161	R	SPYA_HUMAN	Disease (HP1)	180177227	A/C	G	161	R
21	UniProt	VAR_074587	G	161	S	SPYA_HUMAN	Disease (HP1)	180177227	A/C	G	161	S
22	UniProt	VAR_074588	L	166	P	SPYA_HUMAN	Disease (HP1)	180177230	A/C	L	166	P
23	UniProt	VAR_000590	G	170	R	SPYA_HUMAN	Disease (HP1)	121908529	A/C	G	170	R
24	UniProt	VAR_060555	C	173	Y	SPYA_HUMAN	Disease (HP1)	180177231	A/C	C	173	Y
25	UniProt	VAR_010973	D	183	N	SPYA_HUMAN	Disease (HP1)	180177236	A/C	D	183	N
26	UniProt	VAR_000591	S	187	F	SPYA_HUMAN	Disease (HP1)	180177238	A/C	S	187	F
27	UniProt	VAR_060556	G	190	R	SPYA_HUMAN	Disease (HP1)	180177239	A/C	G	190	R
28	UniProt	VAR_060557	M	195	R	SPYA_HUMAN	Disease (HP1)	180177244	A/C	M	195	R
29	UniProt	VAR_060558	D	201	E	SPYA_HUMAN	Disease (HP1)	180177246	A/C	D	201	E
30	UniProt	VAR_074589	I	202	N	SPYA_HUMAN	Unclassified (HP1)	---	A/C	I	202	N
31	UniProt	VAR_000592	S	205	P	SPYA_HUMAN	Disease (HP1)	121908520	A/C	S	205	P
32	UniProt	VAR_060559	S	218	L	SPYA_HUMAN	Disease (HP1)	180177253	A/C	S	218	L
33	UniProt	VAR_008879	R	233	C	SPYA_HUMAN	Disease (HP1)	121908526	A/C	R	233	C
34	UniProt	VAR_008880	R	233	H	SPYA_HUMAN	Disease (HP1)	121908527	A/C	R	233	H
35	UniProt	VAR_060560	R	233	L	SPYA_HUMAN	Disease (HP1)	121908527	A/C	R	233	L
36	UniProt	VAR_060561	D	243	H	SPYA_HUMAN	Disease (HP1)	180177258	A/C	D	243	H
37	UniProt	VAR_008881	I	244	T	SPYA_HUMAN	Disease (HP1)	121908525	A/C	I	244	T
38	UniProt	VAR_060562	C	253	R	SPYA_HUMAN	Disease (HP1)	180177264	A/C	C	253	R
39	UniProt	VAR_060563	I	279	M	SPYA_HUMAN	Disease (HP1)	180177277	A/C	I	279	M
40	UniProt	VAR_060564	I	279	T	SPYA_HUMAN	Polymorphism	140992177	A/C	I	279	T
41	UniProt	VAR_060565	A	280	V	SPYA_HUMAN	Polymorphism	73106685	A/C	A	280	V
42	UniProt	VAR_060566	S	287	T	SPYA_HUMAN	Disease (HP1)	180177289	A/C	S	287	T
43	UniProt	VAR_060567	R	289	C	SPYA_HUMAN	Disease (HP1)	180177290	A/C	R	289	C
44	UniProt	VAR_048237	A	295	T	SPYA_HUMAN	Polymorphism	13408961	A/C	A	295	T
45	UniProt	VAR_060569	L	298	P	SPYA_HUMAN	Disease (HP1)	180177293	A/C	L	298	P
46	UniProt	VAR_060570	V	326	I	SPYA_HUMAN	Polymorphism	115057148	A/C	V	326	I
47	UniProt	VAR_060571	V	336	D	SPYA_HUMAN	Disease (HP1)	180177155	A/C	V	336	D
48	UniProt	VAR_000593	I	340	M	SPYA_HUMAN	Polymorphism	4426527	A/C	I	340	M
49	UniProt	VAR_060572	G	350	D	SPYA_HUMAN	Disease (HP1)	180177156	A/C	G	350	D
50	UniProt	VAR_007543	N	526	K	PEX5_HUMAN	Disease (PBD2B)	61752138	B/D	N	526	K
51	UniProt	VAR_031328	S	600	W	PEX5_HUMAN	Disease (PBD2B)	---	B/D	S	600	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (3, 14)

Exons (11, 22)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:387
 aligned with SPYA_HUMAN | P21549 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:387
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       
           SPYA_HUMAN     6 LLVTPPKALLKPLSIPNQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKKL 392
               SCOP domains d3r9aa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh.......ee........hhhhhhhh........hhhhhhhhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhh..eeeee.ee....ee....hhhhhhhhh..eeeee..................eeeee...........eeeeehhhhhhhhhhh.........hhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eeeee.....hhhhhhhhhhhhhhee....hhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) ---N-L----------S-------------C----E-----R----------------------------------E-------------------------R---D---R---------------------------------P-IV--R-L--C----P---R--Y---------N---F--R----R-----EN--P------------L--------------C---------HT--------R-------------------------MV------T-C-----T--P---------------------------I---------D---M---------D------------------------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------R----------------------------------------R------------------------------------------------------------------------------R-----------------------------------------------------------------------H---------------------------------------------T----------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -----------------------------------V-----------------------------------------------------------------------------------------------------------------------S-----------------------------------------------------------------------L--------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFER_CLASS_5  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:6-55 UniProt: 1-55 [INCOMPLETE] Exon 1.2  PDB: A:56-120 UniProt: 56-120                          ---------------------Exon 1.4b  PDB: A:142-175         -----------------------Exon 1.6  PDB: A:199-227     -------------------------------Exon 1.8a  PDB: A:259-28Exon 1.9b  PDB: A:283-314       Exon 1.10  PDB: A:315-357 UniProt: 315-357 Exon 1.11a  PDB: A:358-392          Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------Exon 1.3              ---------------------------------Exon 1.5a  PDB: A:175-199---------------------------Exon 1.7  PDB: A:227-259         ------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3r9a A   6 LLVTPPKALLKPLSIPNQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQkALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKKL 392
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205   |   215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       
                                                                                                                                                                                                                                     209-LLP

Chain B from PDB  Type:PROTEIN  Length:289
 aligned with PEX5_HUMAN | P50542 from UniProtKB/Swiss-Prot  Length:639

    Alignment length:315
                                   334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634     
           PEX5_HUMAN   325 QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 639
               SCOP domains d3r9ab_ B: automated matches                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhh------------------------hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..--.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-------------------------------------------------------------------------W--------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------TPR_REGION  PDB: B:335-589 UniProt: 335-589                                                                                                                                                                                                                    -------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------TPR  PDB: B:335-368               TPR  PDB: B:369-402               -------------------------------------------------------------------------------------TPR  PDB: B:488-521               TPR  PDB: B:522-555               TPR  PDB: B:556-589               -------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r9a B 325 QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLV------------------------DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR--RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 639
                                   334       344       354       364       374       384       394       404       414       424       434     |   -         -         -|      474       484       494       504       514       524       534       544       554       564       574       584     | 594       604       614       624       634     
                                                                                                                                             440                      465                                                                                                                          590  |                                              
                                                                                                                                                                                                                                                                                                      593

Chain C from PDB  Type:PROTEIN  Length:389
 aligned with SPYA_HUMAN | P21549 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           SPYA_HUMAN     4 HKLLVTPPKALLKPLSIPNQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKKL 392
               SCOP domains d3r9ac_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------Aminotran_5-3r9aC01 C:24-376                                                                                                                                                                                                                                                                                                                                     ---------------- Pfam domains (1)
           Pfam domains (2) --------------------Aminotran_5-3r9aC02 C:24-376                                                                                                                                                                                                                                                                                                                                     ---------------- Pfam domains (2)
         Sec.struct. author ....................ee........hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhh..eeeee.............hhhhhhhhh..eeeee..................eeeee...........eeeeehhhhhhhhhh..........hhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh...eeeee.....hhhhhhhhhhhhhhee....hhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) -----N-L----------S-------------C----E-----R----------------------------------E-------------------------R---D---R---------------------------------P-IV--R-L--C----P---R--Y---------N---F--R----R-----EN--P------------L--------------C---------HT--------R-------------------------MV------T-C-----T--P---------------------------I---------D---M---------D------------------------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------R----------------------------------------R------------------------------------------------------------------------------R-----------------------------------------------------------------------H---------------------------------------------T----------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -------------------------------------V-----------------------------------------------------------------------------------------------------------------------S-----------------------------------------------------------------------L--------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFER_CLASS_5  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: C:4-55 UniProt: 1-55 [INCOMPLETE]   Exon 1.2  PDB: C:56-120 UniProt: 56-120                          ---------------------Exon 1.4b  PDB: C:142-175         -----------------------Exon 1.6  PDB: C:199-227     -------------------------------Exon 1.8a  PDB: C:259-28Exon 1.9b  PDB: C:283-314       Exon 1.10  PDB: C:315-357 UniProt: 315-357 Exon 1.11a  PDB: C:358-392          Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------Exon 1.3              ---------------------------------Exon 1.5a  PDB: C:175-199---------------------------Exon 1.7  PDB: C:227-259         ------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3r9a C   4 HKLLVTPPKALLKPLSIPNQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQkALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKKL 392
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203     | 213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                                                                                                                                       209-LLP

Chain D from PDB  Type:PROTEIN  Length:292
 aligned with PEX5_HUMAN | P50542 from UniProtKB/Swiss-Prot  Length:639

    Alignment length:316
                                   333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633      
           PEX5_HUMAN   324 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 639
               SCOP domains d3r9ad_ D: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------TPR_11-3r9aD07 D:339-400                                      -----------------------------------------------------------------------------------------------------------------------------------------------------------TPR_1-3r9aD01 D:556-589           -------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------TPR_11-3r9aD08 D:339-400                                      -----------------------------------------------------------------------------------------------------------------------------------------------------------TPR_1-3r9aD02 D:556-589           -------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPR_1-3r9aD03 D:556-589           -------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPR_1-3r9aD04 D:556-589           -------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPR_1-3r9aD05 D:556-589           -------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPR_1-3r9aD06 D:556-589           -------------------------------------------------- Pfam domains (6)
         Sec.struct. author .............hhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhh...-----------------...hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.-------...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-------------------------------------------------------------------------W--------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------TPR_REGION  PDB: D:335-589 UniProt: 335-589                                                                                                                                                                                                                    -------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------TPR  PDB: D:335-368               TPR  PDB: D:369-402               -------------------------------------------------------------------------------------TPR  PDB: D:488-521               TPR  PDB: D:522-555               TPR  PDB: D:556-589               -------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r9a D 324 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPA-----------------SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS-------GAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 639
                                   333       343       353       363       373       383       393       403       413       423       433       443         -       463       473       483       493       503       513       523       533       543       553       563       573       583     |   -   |   603       613       623       633      
                                                                                                                                                 443               461                                                                                                                             589     597

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (0, 0)

Pfam Domains (3, 10)

Gene Ontology (47, 50)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,C (SPYA_HUMAN | P21549)

molecular function
	GO:0008453	alanine-glyoxylate transaminase activity	Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine.
	GO:0016597	amino acid binding	Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0043621	protein self-association	Interacting selectively and non-covalently with a domain within the same polypeptide.
	GO:0030170	pyridoxal phosphate binding	Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
	GO:0004760	serine-pyruvate transaminase activity	Catalysis of the reaction: L-serine + pyruvate = 3-hydroxypyruvate + L-alanine.
	GO:0008483	transaminase activity	Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0042853	L-alanine catabolic process	The chemical reactions and pathways resulting in the breakdown of L-alanine, the L-enantiomer of 2-aminopropanoic acid, i.e. (2S)-2-aminopropanoic acid.
	GO:0019448	L-cysteine catabolic process	The chemical reactions and pathways resulting in the breakdown of L-cysteine, the L-enantiomer of 2-amino-3-mercaptopropanoic acid, i.e. (2R)-2-amino-3-mercaptopropanoic acid.
	GO:0007219	Notch signaling pathway	A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Notch on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
	GO:0019265	glycine biosynthetic process, by transamination of glyoxylate	The chemical reactions and pathways resulting in the formation of glycine by the transamination of glyoxylate.
	GO:0009436	glyoxylate catabolic process	The chemical reactions and pathways resulting in the breakdown of glyoxylate, the anion of glyoxylic acid, HOC-COOH.
	GO:0046487	glyoxylate metabolic process	The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH.
	GO:0046724	oxalic acid secretion	The controlled release of oxalic acid, ethanedioic acid, by a cell or a tissue.
	GO:0010498	proteasomal protein catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
	GO:0042866	pyruvate biosynthetic process	The chemical reactions and pathways resulting in the formation of pyruvate, 2-oxopropanoate.
	GO:0051591	response to cAMP	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.
	GO:0051384	response to glucocorticoid	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
cellular component
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005782	peroxisomal matrix	The volume contained within the membranes of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase.
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

Chain B,D (PEX5_HUMAN | P50542)

molecular function
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
	GO:0005052	peroxisome matrix targeting signal-1 binding	Interacting selectively and non-covalently with a type 1 peroxisome targeting signal, a tripeptide with the consensus sequence (S/A/C)-(K/R/H)-L.
	GO:0000268	peroxisome targeting sequence binding	Interacting selectively and non-covalently with a peroxisomal targeting sequence, any of several sequences of amino acids within a protein that can act as a signal for the localization of the protein into the peroxisome.
	GO:0008022	protein C-terminus binding	Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
	GO:0047485	protein N-terminus binding	Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0031267	small GTPase binding	Interacting selectively and non-covalently with a small monomeric GTPase.
biological process
	GO:1901094	negative regulation of protein homotetramerization	Any process that stops, prevents or reduces the frequency, rate or extent of protein homotetramerization.
	GO:0016558	protein import into peroxisome matrix	The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported. The cargo protein is then released into the peroxisome matrix.
	GO:0016560	protein import into peroxisome matrix, docking	The process in which a complex formed of a peroxisome targeting sequence (PTS) receptor bound to a PTS-bearing protein docks with translocation machinery in the peroxisomal membrane.
	GO:0016561	protein import into peroxisome matrix, translocation	The process in which proteins are moved across the peroxisomal membrane into the matrix. It is likely that the peroxisome targeting sequence receptor remains associated with cargo proteins during translocation.
	GO:0045046	protein import into peroxisome membrane	The targeting of proteins into the peroxisomal membrane. The process is not well understood, but both signals and mechanism differ from those involved in peroxisomal matrix protein import.
	GO:0006625	protein targeting to peroxisome	The process of directing proteins towards the peroxisome, usually using signals contained within the protein.
	GO:0051262	protein tetramerization	The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005782	peroxisomal matrix	The volume contained within the membranes of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase.
	GO:0005778	peroxisomal membrane	The lipid bilayer surrounding a peroxisome.
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.
	GO:0043234	protein complex	A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (7, 7)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (51, 102)

PROSITE Motifs (3, 14)

Exons (11, 22)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (0, 0)

Pfam Domains (3, 10)

Gene Ontology (47, 50)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File