Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  STIGMATELLIN-BOUND CYTOCHROME BC1 COMPLEX FROM CHICKEN
 
Authors :  Z. Zhang, L. Huang, V. M. Shulmeister, Y. I. Chi, K. K. Kim, L. W. Hung, A. R E. A. Berry, S. H. Kim
Date :  18 Sep 98  (Deposition) - 02 Aug 99  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Ubiquinone, Oxidoreductase, Redox Enzyme, Membrane Protein, Respiratory Chain, Stigmatellin (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Zhang, L. Huang, V. M. Shulmeister, Y. I. Chi, K. K. Kim, L. W. Hung, A. R. Crofts, E. A. Berry, S. H. Kim
Electron Transfer By Domain Movement In Cytochrome Bc1
Nature V. 392 677 1998
PubMed-ID: 9565029  |  Reference-DOI: 10.1038/33612
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
    Cellular LocationMITOCHONDRIAL INNER MEMBRANE
    ChainsA
    EC Number1.10.2.2
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonCHICKEN
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    Other DetailsMODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN
    Other Details - SourceISOLATED FROM TISSUE
    SynonymCYTOCHROME BC1 COMPLEX, COMPLEX III
    TissueMUSCLE
 
Molecule 2 - UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
    Cellular LocationMITOCHONDRIAL INNER MEMBRANE
    ChainsB
    EC Number1.10.2.2
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonCHICKEN
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    Other DetailsMODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN
    Other Details - SourceISOLATED FROM TISSUE
    SynonymCYTOCHROME BC1 COMPLEX, COMPLEX III
    TissueMUSCLE
 
Molecule 3 - UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
    Cellular LocationMITOCHONDRIAL INNER MEMBRANE
    ChainsC
    EC Number1.10.2.2
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonCHICKEN
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    Other DetailsMODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN
    Other Details - SourceISOLATED FROM TISSUE
    SynonymCYTOCHROME BC1 COMPLEX, COMPLEX III
    TissueMUSCLE
 
Molecule 4 - UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
    Cellular LocationMITOCHONDRIAL INNER MEMBRANE
    ChainsD
    EC Number1.10.2.2
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonCHICKEN
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    Other DetailsMODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN
    Other Details - SourceISOLATED FROM TISSUE
    SynonymCYTOCHROME BC1 COMPLEX, COMPLEX III
    TissueMUSCLE
 
Molecule 5 - UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
    Cellular LocationMITOCHONDRIAL INNER MEMBRANE
    ChainsE
    EC Number1.10.2.2
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonCHICKEN
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    Other DetailsMODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN
    Other Details - SourceISOLATED FROM TISSUE
    SynonymCYTOCHROME BC1 COMPLEX, COMPLEX III
    TissueMUSCLE
 
Molecule 6 - UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
    Cellular LocationMITOCHONDRIAL INNER MEMBRANE
    ChainsF
    EC Number1.10.2.2
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonCHICKEN
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    Other DetailsMODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN
    Other Details - SourceISOLATED FROM TISSUE
    SynonymCYTOCHROME BC1 COMPLEX, COMPLEX III
    TissueMUSCLE
 
Molecule 7 - UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
    Cellular LocationMITOCHONDRIAL INNER MEMBRANE
    ChainsG
    EC Number1.10.2.2
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonCHICKEN
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    Other DetailsMODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN
    Other Details - SourceISOLATED FROM TISSUE
    SynonymCYTOCHROME BC1 COMPLEX, COMPLEX III
    TissueMUSCLE
 
Molecule 8 - UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
    Cellular LocationMITOCHONDRIAL INNER MEMBRANE
    ChainsH
    EC Number1.10.2.2
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonCHICKEN
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    Other DetailsMODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN
    Other Details - SourceISOLATED FROM TISSUE
    SynonymCYTOCHROME BC1 COMPLEX, COMPLEX III
    TissueMUSCLE
 
Molecule 9 - UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
    Cellular LocationMITOCHONDRIAL INNER MEMBRANE
    ChainsI
    EC Number1.10.2.2
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonCHICKEN
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    Other DetailsMODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN
    Other Details - SourceISOLATED FROM TISSUE
    SynonymCYTOCHROME BC1 COMPLEX, COMPLEX III
    TissueMUSCLE
 
Molecule 10 - UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
    Cellular LocationMITOCHONDRIAL INNER MEMBRANE
    ChainsJ
    EC Number1.10.2.2
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonCHICKEN
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    Other DetailsMODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN
    Other Details - SourceISOLATED FROM TISSUE
    SynonymCYTOCHROME BC1 COMPLEX, COMPLEX III
    TissueMUSCLE

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 42)

Asymmetric/Biological Unit (7, 42)
No.NameCountTypeFull Name
1BOG1Ligand/IonB-OCTYLGLUCOSIDE
2FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3HEM3Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4PEE2Ligand/Ion1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
5SIG1Ligand/IonSTIGMATELLIN
6U101Ligand/IonUBIQUINONE-10
7UNK33Mod. Amino Acid

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR C:76 , HIS D:200 , ARG D:203 , LYS D:207 , ALA E:50 , ASN E:53 , GLN E:57 , PEE E:198 , ASP J:40BINDING SITE FOR RESIDUE BOG D 242
02AC2SOFTWAREGLN C:45 , GLY C:49 , LEU C:50 , LEU C:52 , ALA C:53 , ARG C:81 , HIS C:84 , LEU C:124 , GLY C:131 , TYR C:132 , LEU C:134 , PRO C:135 , HIS C:183 , PHE C:184 , PRO C:187BINDING SITE FOR RESIDUE HEM C 381
03AC3SOFTWARETRP C:32 , PHE C:34 , GLY C:35 , LEU C:38 , ALA C:39 , HIS C:98 , ILE C:99 , ARG C:101 , SER C:107 , TRP C:114 , GLY C:117 , LEU C:120 , HIS C:197 , LEU C:198 , LEU C:201 , ASN C:207BINDING SITE FOR RESIDUE HEM C 382
04AC4SOFTWAREVAL D:36 , CYS D:37 , SER D:39 , CYS D:40 , HIS D:41 , ASN D:105 , PRO D:110 , PRO D:111 , LEU D:113 , ILE D:116 , ARG D:120 , TYR D:126 , PHE D:153 , ILE D:158 , GLY D:159 , MET D:160 , PRO D:163 , VAL D:186BINDING SITE FOR RESIDUE HEM D 243
05AC5SOFTWARECYS E:139 , HIS E:141 , CYS E:144 , CYS E:158 , CYS E:160 , HIS E:161 , GLY E:162 , SER E:163BINDING SITE FOR RESIDUE FES E 197
06AC6SOFTWAREILE C:15 , LEU C:22 , LEU C:198 , HIS C:202 , SER C:206 , PHE C:221 , ASP C:229BINDING SITE FOR RESIDUE U10 C 383
07AC7SOFTWAREPHE A:442 , ILE C:230 , THR C:234 , VAL D:219 , BOG D:242 , TYR E:37 , THR E:40 , THR E:44 , VAL E:47 , PHE J:14 , PHE J:20 , ALA J:21 , LEU J:29 , GLU J:32BINDING SITE FOR RESIDUE PEE E 198
08AC8SOFTWARETRP C:31 , PHE C:96 , LEU C:97 , TYR C:105 , PHE C:277 , THR C:317 , TYR C:359 , ASN F:69 , VAL G:48BINDING SITE FOR RESIDUE PEE C 384
09AC9SOFTWAREMET C:125 , PHE C:129 , VAL C:146 , ILE C:147 , LEU C:182 , ILE C:269 , PRO C:271 , GLU C:272 , PHE C:275 , TYR C:279 , LEU C:295BINDING SITE FOR RESIDUE SIG C 385
10BHIAUTHORHIS C:98 , HIS C:197HISTIDINE AXIAL LIGANDS OF HIGH POTENTIAL HEME OF CYTOCHROME B.
11BLOAUTHORHIS C:84 , HIS C:183HISTIDINE AXIAL LIGANDS OF LOW POTENTIAL HEME OF CYTOCHROME B.
12C1HAUTHORHIS D:41 , MET D:160HISTIDINE AND METHIONINE AXIAL LIGANDS OF HIGH POTENTIAL HEME OF CYTOCHROME C1.
13FESAUTHORCYS E:139 , HIS E:141 , CYS E:158 , HIS E:161HISTIDINE AND CYSTINE LIGANDS OF THE RIESKE IRON -SULFUR CLUSTER.

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1E:144 -E:160
2H:24 -H:68
3H:40 -H:54

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BCC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_QCR2_BOVIN_001 *T41RQCR2_BOVIN  ---  ---BT27R
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 4)

Asymmetric/Biological Unit (4, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1INSULINASEPS00143 Insulinase family, zinc-binding region signature.QCR2_BOVIN68-91  1B:54-77
2CYTCPS51007 Cytochrome c family profile.CY1_BOVIN108-209  1D:24-125
3RIESKEPS51296 Rieske [2Fe-2S] iron-sulfur domain profile.UCRI_CHICK172-270  1E:96-193
4CYTB_CTERPS51003 Cytochrome b/b6 C-terminal region profile.CYB_CHICK211-380  1C:211-380

(-) Exons   (29, 29)

Asymmetric/Biological Unit (29, 29)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000012081ENSBTAE00000009533chr17:72385739-72385937199QCR9_BOVIN1-50501J:4-4946
1.2ENSBTAT000000012082ENSBTAE00000240376chr17:72387672-72387934263QCR9_BOVIN51-64141J:50-6213

2.1ENSBTAT000000019931ENSBTAE00000281422chr14:66190479-6619050628QCR7_BOVIN1-770--
2.2ENSBTAT000000019932ENSBTAE00000015823chr14:66193251-6619332272QCR7_BOVIN7-31251F:10-3021
2.3ENSBTAT000000019933ENSBTAE00000015824chr14:66194160-66194326167QCR7_BOVIN31-86561F:30-8556
2.4ENSBTAT000000019934ENSBTAE00000015825chr14:66194981-66195189209QCR7_BOVIN87-111251F:86-10924

3.1ENSBTAT000000126351ENSBTAE00000102910chr3:106702634-106702168467QCR6_BOVIN1-18180--
3.2ENSBTAT000000126352ENSBTAE00000102912chr3:106697217-10669719127QCR6_BOVIN19-2791H:13-142
3.3ENSBTAT000000126353ENSBTAE00000102913chr3:106696456-106696295162QCR6_BOVIN28-81541H:15-6854
3.4ENSBTAT000000126354ENSBTAE00000102915chr3:106693481-106693272210QCR6_BOVIN82-91101H:69-7810

4.1bENSBTAT000000162241bENSBTAE00000292082chr14:574603-574430174CY1_BOVIN1-44440--
4.2ENSBTAT000000162242ENSBTAE00000132070chr14:573852-573656197CY1_BOVIN45-110661D:1-2626
4.3ENSBTAT000000162243ENSBTAE00000132074chr14:573573-573447127CY1_BOVIN110-152431D:26-6843
4.4ENSBTAT000000162244ENSBTAE00000132078chr14:573361-573204158CY1_BOVIN153-205531D:69-12153
4.5ENSBTAT000000162245ENSBTAE00000132082chr14:573118-572958161CY1_BOVIN205-259551D:121-17555
4.6ENSBTAT000000162246ENSBTAE00000132086chr14:572706-572606101CY1_BOVIN259-292341D:175-20834
4.7ENSBTAT000000162247ENSBTAE00000132089chr14:572504-572208297CY1_BOVIN293-326341D:209-24133

5.1ENSBTAT000000288531ENSBTAE00000235576chr25:20764371-20764490120QCR2_BOVIN1-11110--
5.2ENSBTAT000000288532ENSBTAE00000235577chr25:20767797-2076788084QCR2_BOVIN12-39281B:18-258
5.3ENSBTAT000000288533ENSBTAE00000235578chr25:20767977-20768126150QCR2_BOVIN40-89501B:26-7550
5.4ENSBTAT000000288534ENSBTAE00000235579chr25:20769183-2076924765QCR2_BOVIN90-111221B:76-9722
5.5ENSBTAT000000288535ENSBTAE00000235580chr25:20770580-2077063657QCR2_BOVIN111-130201B:97-11620
5.6ENSBTAT000000288536ENSBTAE00000235581chr25:20770859-20770983125QCR2_BOVIN130-172431B:116-15843
5.7ENSBTAT000000288537ENSBTAE00000235582chr25:20772505-2077260298QCR2_BOVIN172-204331B:158-19033
5.8ENSBTAT000000288538ENSBTAE00000235583chr25:20774198-2077425558QCR2_BOVIN205-224201B:191-21020
5.9ENSBTAT000000288539ENSBTAE00000235584chr25:20777626-20777727102QCR2_BOVIN224-258351B:210-24435
5.10ENSBTAT0000002885310ENSBTAE00000235585chr25:20778050-20778249200QCR2_BOVIN258-324671B:244-310 (gaps)67
5.11ENSBTAT0000002885311ENSBTAE00000235586chr25:20782833-2078291381QCR2_BOVIN325-351271B:311-33727
5.12ENSBTAT0000002885312ENSBTAE00000235587chr25:20784744-2078482077QCR2_BOVIN352-377261B:338-36326
5.13ENSBTAT0000002885313ENSBTAE00000235588chr25:20787573-20787726154QCR2_BOVIN377-428521B:363-41452
5.14ENSBTAT0000002885314ENSBTAE00000235591chr25:20791058-20791318261QCR2_BOVIN429-455271B:415-43925

6.1ENSBTAT000000432781ENSBTAE00000319718chr7:44095741-4409579858QCR8_BOVIN-00--
6.2bENSBTAT000000432782bENSBTAE00000319717chr7:44095954-44096121168QCR8_BOVIN1-52521G:2-5150
6.3aENSBTAT000000432783aENSBTAE00000319712chr7:44096758-44096953196QCR8_BOVIN52-82311G:51-7929

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:442
 aligned with QCR1_BOVIN | P31800 from UniProtKB/Swiss-Prot  Length:480

    Alignment length:442
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477  
           QCR1_BOVIN    38 YAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLR 479
               SCOP domains d2bcca1 A:4-232 Cytochrome bc1 core subunit 1                                                                                                                                                                                        d2bcca2 A:233-445 Cytochrome bc1 core subunit 1                                                                                                                                                                       SCOP domains
               CATH domains ----------2bccA01 A:14-227 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                                            -----------2bccA02 A:239-442 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                                 --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.....eeee.....eeeeee.....eeeeeee...hhh.......hhhhhh...........hhhhhhhhhhh..eeeeee....eeeeeee....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh....hhh......hhhhhh..hhhhhhhhhhh..hhh.eeeeee...hhhhhhhhhhh.......hhhh.............eeeee......eeeeeeee......hhhhhhhhhhhhh...............hhhhhhhh.....eeeee........eeeeeeee....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.....hhhhhhhhhh..hhhhhhhhhhh......eeeeee.........hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bcc A   4 YAQALQSVPETQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNRPQNALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCSLEDSQIEKERDVIVRELQENDTSMREVVFNYLHATAFQGTGLAQSVEGPSENIRKLSRADLTEYLSTHYTAPRMVLAAAGGVEHQQLLELAQKHFGGVPFTYDDDAVPTLSKCRFTGSQIRHREDGLPLAHVAIAVEGPGWAHPDLVALQVANAIIGHYDRTYGGGLHSSSPLASIAVTNKLCQSFQTFSICYSETGLFGFYFVCDRMSIDDMMFVLQGQWMRLCTSISESEVLRGKNFLRNALVSHLDGTTPVCEDIGRELLTYGRRIPLEEWEERLAEVDARMVREVCSKYIYDQCPAVAGPGPIEQLPDYNRIRSGMFWLR 445
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443  

Chain B from PDB  Type:PROTEIN  Length:406
 aligned with QCR2_BOVIN | P23004 from UniProtKB/Swiss-Prot  Length:453

    Alignment length:422
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451  
           QCR2_BOVIN    32 PPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 453
               SCOP domains d2bccb1 B:18-235 Cytochrome bc1 core subunit 2                                                                                                                                                                            d2bccb2 B:236-439 Cytochrome bc1 core subunit 2                                                                                                                                                              SCOP domains
               CATH domains 2bccB01 B:18-227 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                                        -----------2bccB02 B:239-439 Cytochrome Bc1 Complex; Chain A,                 domain 1                                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................eeeeee...hhh.......hhhhhhhhhh.......hhhhhhhhhh...eeeeeee..eeeeeee...hhhhhhhhhhhhhhh.....hhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhh............hhh.....hhhhhhhhh....hhheeeee....hhhhhhhh......................eeeee......eeeeee.......hhhhhhhhhhhh..hhhhh...-.---------------.eee..eeee....eeeeeeeee....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh........hhhhhhhh......hhhhhhhhh..eeeeeee........... Sec.struct. author
                 SAPs(SNPs) ---------R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------INSULINASE  PDB: B:54-77-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 5 (1) Exon 5.2Exon 5.3  PDB: B:26-75 UniProt: 40-89             Exon 5.4  PDB: B:76-97------------------Exon 5.6  PDB: B:116-158 UniProt: 130-172  --------------------------------Exon 5.8            ---------------------------------Exon 5.10  PDB: B:244-310 (gaps) UniProt: 258-324                  Exon 5.11  PDB: B:311-337  Exon 5.12  PDB: B:338-363 ---------------------------------------------------Exon 5.14  PDB: B:415-439 Transcript 5 (1)
           Transcript 5 (2) -------------------------------------------------------------------------------Exon 5.5            -----------------------------------------Exon 5.7  PDB: B:158-190         -------------------Exon 5.9  PDB: B:210-244           ----------------------------------------------------------------------------------------------------------------------Exon 5.13  PDB: B:363-414 UniProt: 377-428          ------------------------- Transcript 5 (2)
                 2bcc B  18 PPHPQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFTSARMALVGLGVSHPVLKNVAEQLLNIRGGLGLSGAKAKYRGGEIREQNGDSLVHAAIVAESAAIGGAEANAFSVLQHVLGANPHVKRG-N---------------PFDVSAFNASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQGNVSNENVQAAKNKLKAKYLMSVESSEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFVSRQKSMAASGNLGHTPFVDEL 439
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287| |      -       307       317       327       337       347       357       367       377       387       397       407       417       427       437  
                                                                                                                                                                                                                                                                                                        288 |             306                                                                                                                                     
                                                                                                                                                                                                                                                                                                          290                                                                                                                                                     

Chain C from PDB  Type:PROTEIN  Length:379
 aligned with CYB_CHICK | P18946 from UniProtKB/Swiss-Prot  Length:380

    Alignment length:379
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371         
            CYB_CHICK     2 APNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLMTQILTGLLLAMHYTADTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIFLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGITIIHLTFLHESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLMLTPFLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQTLFWLLVANLLILTWIGSQPVEHPFIIIGQMASLSYFTILLILFPTIGTLENKMLNY 380
               SCOP domains d2bccc3 C:2-261 Mitochondrial cytochrome b subunit, N-terminal domain                                                                                                                                                                                               d2bccc2 C:262-380 Mitochondrial cytochrome b subunit, C-terminal domain                                                 SCOP domains
               CATH domains 2bccC00 C:2-380 Cytochrome Bc1 Complex; Chain C                                                                                                                                                                                                                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh............hhh...hhhhhhhhhhhhhhhhhh.........hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhh..hhhh..hhhh...............hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh.hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTB_CTER  PDB: C:211-380 UniProt: 211-380                                                                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bcc C   2 APNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLMTQILTGLLLAMHYTADTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIFLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGITIIHLTFLHESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLMLTPFLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQTLFWLLVANLLILTWIGSQPVEHPFIIIGQMASLSYFTILLILFPTIGTLENKMLNY 380
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371         

Chain D from PDB  Type:PROTEIN  Length:241
 aligned with CY1_BOVIN | P00125 from UniProtKB/Swiss-Prot  Length:325

    Alignment length:241
                                    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324 
            CY1_BOVIN    85 SDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPPK 325
               SCOP domains d2bccd2 D:1-195 Cytochrome bc1 domain                                                                                                                                                              d2bccd3 D:196-241                              SCOP domains
               CATH domains 2bccD02 D:1-196 Cytochrome c                                                                                                                                                                        2bccD01 D:197-241                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhh...........hhhh......hhhhhhhhh..eeee........eeee.............hhhhhh............hhh....hhhhhhhhhhh.............................................hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------CYTC  PDB: D:24-125 UniProt: 108-209                                                                  -------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 4 (1) Exon 4.2  PDB: D:1-26     ------------------------------------------Exon 4.4  PDB: D:69-121 UniProt: 153-205             -----------------------------------------------------Exon 4.6  PDB: D:175-208          Exon 4.7  PDB: D:209-241          Transcript 4 (1)
           Transcript 4 (2) -------------------------Exon 4.3  PDB: D:26-68 UniProt: 110-152    ----------------------------------------------------Exon 4.5  PDB: D:121-175 UniProt: 205-259              ------------------------------------------------------------------ Transcript 4 (2)
                 2bcc D   1 SDLELHPPSYPWSHRGPLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSVREGLYFNPYFPGQAIGMAPPIYNDVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLVPLVYYMKRHKWSVLKSRKLAYRPPK 241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 

Chain E from PDB  Type:PROTEIN  Length:196
 aligned with UCRI_CHICK | Q5ZLR5 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:196
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266      
           UCRI_CHICK    77 VHNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLEVPTYQFVGDDLVVVG 272
               SCOP domains d2bcce2 E:1-69                                                       d2bcce1 E:70-196 ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain                                  SCOP domains
               CATH domains -2bccE01 E:2-67  [code=1.20.5.270, no name defined]                2bccE02 E:68-196 'Rieske'-like iron-sulphur domains                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeehhh.....eeee......eeeee..hhhhhhhh...hhh......hhhh.....eeeee.................eeeee....eeee.........................eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------------------------------------------------------------------RIESKE  PDB: E:96-193 UniProt: 172-270                                                             -- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bcc E   1 SHTDIKVPNFSDYRRPPDDYSTKSSRESDPSRKGFSYLVTAVTTLGVAYAAKNVVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 196
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190      

Chain F from PDB  Type:PROTEIN  Length:100
 aligned with QCR7_BOVIN | P00129 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:100
                                    20        30        40        50        60        70        80        90       100       110
           QCR7_BOVIN    11 SRWLEGIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYNDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 110
               SCOP domains d2bccf_ F: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)               SCOP domains
               CATH domains 2bccF00 F:10-109 Cytochrome Bc1 Complex; Chain F                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.hhh....hhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhhh.......hhh...hhh.....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2  PDB: F:10-3-------------------------------------------------------Exon 2.4  PDB: F:86-109  Transcript 2 (1)
           Transcript 2 (2) --------------------Exon 2.3  PDB: F:30-85 UniProt: 31-86                   ------------------------ Transcript 2 (2)
                 2bcc F  10 SRWLEGIRKWYYNAAGFNKYGLMRDDTIYENDDVKEAIRRLPENLYDDRMFRIKRALDLNMRQQILPKEQWTKYEEDVPYLEPYLKEVIRERKEREEWDK 109
                                    19        29        39        49        59        69        79        89        99       109

Chain G from PDB  Type:PROTEIN  Length:78
 aligned with QCR8_BOVIN | P13271 from UniProtKB/Swiss-Prot  Length:82

    Alignment length:78
                                    12        22        32        42        52        62        72        
           QCR8_BOVIN     3 RQFGHLTRVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPAAYEN  80
               SCOP domains d2bccg_ G:                                                                     SCOP domains
               CATH domains 2bccG00 G:2-79  [code=1.20.5.210, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
           Transcript 6 (1) Exon 6.2b  PDB: G:2-51 UniProt: 1-52 [INCOMPLETE] ---------------------------- Transcript 6 (1)
           Transcript 6 (2) -------------------------------------------------Exon 6.3a  PDB: G:51-79       Transcript 6 (2)
                 2bcc G   2 RQFGHLTRVRHLITYSLSPFEQRPFPHYFSKGVPNVWRRLRACILRVAPPFLAFYLLYTWGTQEFEKSKRKNPAAYVN  79
                                    11        21        31        41        51        61        71        

Chain H from PDB  Type:PROTEIN  Length:66
 aligned with QCR6_BOVIN | P00126 from UniProtKB/Swiss-Prot  Length:91

    Alignment length:66
                                    35        45        55        65        75        85      
           QCR6_BOVIN    26 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK  91
               SCOP domains d2bcch_ H:                                                         SCOP domains
               CATH domains 2bccH00 H:13-78  [code=1.10.287.20, no name defined]               CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhh.hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
               Transcript 3 3.Exon 3.3  PDB: H:15-68 UniProt: 28-81                 Exon 3.4   Transcript 3
                 2bcc H  13 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELFDFLHARDHCVAHKLFNSLK  78
                                    22        32        42        52        62        72      

Chain I from PDB  Type:PROTEIN  Length:33
                                                                 
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author ................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 2bcc I 105 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 315
                            |||||||114|||||||204|||||||312|||
                          105-UNK||114-UNK||203-UNK||310-UNK|
                           106-UNK||115-UNK||204-UNK||311-UNK
                            107-UNK||116-UNK||205-UNK||312-UNK
                             108-UNK| 117-UNK| 206-UNK| 313-UNK
                              109-UNK  118-UNK  207-UNK  314-UNK
                               110-UNK  119-UNK  208-UNK  315-UNK
                                111-UNK  120-UNK  209-UNK    
                                 112-UNK  121-UNK  210-UNK   
                                  113-UNK  202-UNK  309-UNK  

Chain J from PDB  Type:PROTEIN  Length:59
 aligned with QCR9_BOVIN | P00130 from UniProtKB/Swiss-Prot  Length:64

    Alignment length:59
                                    14        24        34        44        54         
           QCR9_BOVIN     5 TLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEGKLWKHIKHKYENK  63
               SCOP domains d2bccj_ J:                                                  SCOP domains
               CATH domains 2bccJ00 J:4-62  [code=1.20.5.260, no name defined]          CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: J:4-49 UniProt: 1-50           Exon 1.2      Transcript 1
                 2bcc J   4 TLTARLYSLLFRRTSTFALTIVVGALLFERAFDQGADAIYEHINEGKLWKHIKHKYENK  62
                                    13        23        33        43        53         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (12, 14)

Asymmetric/Biological Unit

(-) CATH Domains  (10, 13)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BCC)

(-) Gene Ontology  (38, 114)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (QCR1_BOVIN | P31800)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004222    metalloendopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0009060    aerobic respiration    The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
    GO:0006122    mitochondrial electron transport, ubiquinol to cytochrome c    The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0016485    protein processing    Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein. Protein maturation is the process leading to the attainment of the full functional capacity of a protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005750    mitochondrial respiratory chain complex III    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.

Chain B   (QCR2_BOVIN | P23004)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004222    metalloendopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0009060    aerobic respiration    The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
    GO:0006122    mitochondrial electron transport, ubiquinol to cytochrome c    The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0016485    protein processing    Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein. Protein maturation is the process leading to the attainment of the full functional capacity of a protein.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005750    mitochondrial respiratory chain complex III    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.

Chain C   (CYB_CHICK | P18946)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006122    mitochondrial electron transport, ubiquinol to cytochrome c    The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0022904    respiratory electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0045275    respiratory chain complex III    A protein complex that transfers electrons from ubiquinol to cytochrome c and translocates two protons across a membrane. The complex contains a core structure of three catalytic subunits: cytochrome b, the Rieske iron sulfur protein (ISP), and cytochrome c1, which are arranged in an integral membrane-bound dimeric complex; additional subunits are present, and vary among different species.

Chain D   (CY1_BOVIN | P00125)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.

Chain E   (UCRI_CHICK | Q5ZLR5)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016679    oxidoreductase activity, acting on diphenols and related substances as donors    Catalysis of an oxidation-reduction (redox) reaction in which a diphenol or related substance acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.

Chain F   (QCR7_BOVIN | P00129)
molecular function
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:0009060    aerobic respiration    The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006122    mitochondrial electron transport, ubiquinol to cytochrome c    The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
    GO:0034551    mitochondrial respiratory chain complex III assembly    The aggregation, arrangement and bonding together of a set of components to form the cytochrome bc(1) complex (also known as ubiquinol-cytochrome c reductase), in the mitochondrial inner membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005750    mitochondrial respiratory chain complex III    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.

Chain G   (QCR8_BOVIN | P13271)
molecular function
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:0021680    cerebellar Purkinje cell layer development    The process whose specific outcome is the progression of the cerebellar Purkinje cell layer over time, from its formation to the mature structure. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells.
    GO:0021766    hippocampus development    The progression of the hippocampus over time from its initial formation until its mature state.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0021854    hypothalamus development    The progression of the hypothalamus region of the forebrain, from its initial formation to its mature state.
    GO:0030901    midbrain development    The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0021548    pons development    The process whose specific outcome is the progression of the pons over time, from its formation to the mature structure. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum.
    GO:0021860    pyramidal neuron development    The progression of a pyramidal neuron from its initial formation to its mature state.
    GO:0021539    subthalamus development    The process whose specific outcome is the progression of the subthalamus over time, from its formation to the mature structure. The subthalamus is the anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis.
    GO:0021794    thalamus development    The process in which the thalamus changes over time, from its initial formation to its mature state.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.

Chain H   (QCR6_BOVIN | P00126)
molecular function
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006122    mitochondrial electron transport, ubiquinol to cytochrome c    The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.

Chain J   (QCR9_BOVIN | P00130)
molecular function
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:0009060    aerobic respiration    The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006122    mitochondrial electron transport, ubiquinol to cytochrome c    The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
    GO:0034551    mitochondrial respiratory chain complex III assembly    The aggregation, arrangement and bonding together of a set of components to form the cytochrome bc(1) complex (also known as ubiquinol-cytochrome c reductase), in the mitochondrial inner membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005750    mitochondrial respiratory chain complex III    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BOG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FES  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    HEM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SIG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    U10  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    UNK  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BHI  [ RasMol ]  +environment [ RasMol ]
    BLO  [ RasMol ]  +environment [ RasMol ]
    C1H  [ RasMol ]  +environment [ RasMol ]
    FES  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2bcc)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2bcc
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CY1_BOVIN | P00125
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  CYB_CHICK | P18946
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  QCR1_BOVIN | P31800
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  QCR2_BOVIN | P23004
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  QCR6_BOVIN | P00126
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  QCR7_BOVIN | P00129
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  QCR8_BOVIN | P13271
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  QCR9_BOVIN | P00130
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  UCRI_CHICK | Q5ZLR5
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.10.2.2
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  CY1_BOVIN | P00125
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  CYB_CHICK | P18946
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  QCR1_BOVIN | P31800
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  QCR2_BOVIN | P23004
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  QCR6_BOVIN | P00126
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  QCR7_BOVIN | P00129
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  QCR8_BOVIN | P13271
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  QCR9_BOVIN | P00130
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  UCRI_CHICK | Q5ZLR5
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CY1_BOVIN | P001251bcc 1be3 1bgy 1l0l 1l0n 1ntk 1ntm 1ntz 1nu1 1pp9 1ppj 1qcr 1sqb 1sqp 1sqq 1sqv 1sqx 2a06 2fyu 2ybb 3bcc 4d6t 4d6u 5gpn 5klv 5luf 5nmi
        CYB_CHICK | P189461bcc 1lly 3bcc 3cwb 3h1h 3h1i 3h1j 3h1k 3h1l 3l70 3l71 3l72 3l73 3l74 3l75 3tgu 4u3f
        QCR1_BOVIN | P318001bcc 1be3 1bgy 1l0l 1l0n 1ntk 1ntm 1ntz 1nu1 1pp9 1ppj 1qcr 1sqb 1sqp 1sqq 1sqv 1sqx 2a06 2fyu 2ybb 3bcc 4d6t 4d6u 5gpn 5klv 5luf 5nmi
        QCR2_BOVIN | P230041bcc 1be3 1bgy 1l0l 1l0n 1ntk 1ntm 1ntz 1nu1 1pp9 1ppj 1qcr 1sqb 1sqp 1sqq 1sqv 1sqx 2a06 2fyu 2ybb 3bcc 4d6t 4d6u 5gpn 5klv 5luf 5nmi
        QCR6_BOVIN | P001261bcc 1be3 1bgy 1l0l 1l0n 1ntk 1ntm 1ntz 1nu1 1pp9 1ppj 1qcr 1sqb 1sqp 1sqq 1sqv 1sqx 2a06 2fyu 2ybb 3bcc 4d6t 4d6u 5gpn 5klv 5luf 5nmi
        QCR7_BOVIN | P001291bcc 1be3 1bgy 1l0l 1l0n 1ntk 1ntm 1ntz 1nu1 1pp9 1ppj 1qcr 1sqb 1sqp 1sqq 1sqv 1sqx 2a06 2fyu 2ybb 3bcc 4d6t 4d6u 5klv 5luf 5nmi
        QCR8_BOVIN | P132711bcc 1be3 1bgy 1l0l 1l0n 1ntk 1ntm 1ntz 1nu1 1pp9 1ppj 1qcr 1sqb 1sqp 1sqq 1sqv 1sqx 2a06 2fyu 2ybb 3bcc 4d6t 4d6u 5gpn 5klv 5luf 5nmi
        QCR9_BOVIN | P001301bcc 1be3 1bgy 1l0l 1l0n 1ntk 1ntm 1ntz 1nu1 1pp9 1ppj 1qcr 1sqb 1sqp 1sqq 1sqv 1sqx 2a06 2fyu 2ybb 3bcc 4d6t 4d6u 5gpn 5klv 5luf 5nmi
        UCRI_CHICK | Q5ZLR51bcc 3bcc 3cwb 3h1h 3h1i 3h1j 3h1k 3h1l 3l70 3l71 3l72 3l73 3l74 3l75 3tgu 4u3f

(-) Related Entries Specified in the PDB File

1bcc