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(-) Description

Title :  CHICKEN CYTOCHROME BC1 COMPLEX WITH KRESOXYM-I-DIMETHYL BOUND
 
Authors :  L. Huang, Z. Zhang, E. A. Berry
Date :  27 Dec 09  (Deposition) - 02 Feb 10  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.06
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,N,O,P,Q,R,S,T,U,V,W
Keywords :  Cytochrome Bc1, Membrane Protein, Heme Protein, Rieske Iron Sulfur Protein, Cytochrome B, Cytochrome C1, Complex Iii, Mitochondrial Processing Protein, Ubiquinone, Azoxystrobin Oxidoreductase, Redox Enzyme Respiratory Chain, Electron Transport, Heme, Inner Membrane, Membrane, Strobilurins Binding, Mitochondrion, Transmembrane, Stigmatellin, Iron, Mitochondrial Inner Membrane, Respiratory Chain, Iron-Sulfur, Transit Peptide, Metal-Binding, Mitochondrion Inner Membrane, Transport, Disulfide Bond, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Huang, E. A. Berry
Famoxadone And Related Inhibitors Bind Like Methoxy Acrylat Inhibitors In The Qo Site Of The Bc1 Compl And Fix The Rieske Iron-Sulfur Protein In A Positio Close To But Distinct From That Seen With Stigmatellin And Other "Distal Qo Inhibitors.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I
    Chains: A, N
    EC Number: 1.10.2.2
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
 
Molecule 2 - MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2
    Chains: B, O
    EC Number: 1.10.2.2
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
 
Molecule 3 - CYTOCHROME B
    Chains: C, P
    EC Number: 1.10.2.2
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CYTOCHROME B SUBUNIT, CYTOCHROME B-C1 COMPLEX SUBUNIT 3, COMPLEX III SUBUNIT 3, COMPLEX III SUBUNIT III
 
Molecule 4 - MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN
    Chains: D, Q
    EC Number: 1.10.2.2
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
 
Molecule 5 - CYTOCHROME B-C1 COMPLEX SUBUNIT 5, RIESKE IRONSULFUR PROTEIN, MITOCHONDRIAL
    Chains: E, R
    EC Number: 1.10.2.2
    Fragment: UNP RESIDUES 77-272
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, RIESKE IRON-SULFUR PROTEIN, RISP, COMPLEX III SUBUNIT 5
 
Molecule 6 - MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN
    Chains: F, S
    EC Number: 1.10.2.2
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
 
Molecule 7 - MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE- BINDING PROTEIN QP-C
    Chains: G, T
    EC Number: 1.10.2.2
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
 
Molecule 8 - MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII
    Chains: H, U
    EC Number: 1.10.2.2
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
 
Molecule 9 - CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL
    Chains: I, V
    EC Number: 1.10.2.2
    Fragment: UNP RESIDUES 45-76
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, RIESKE IRON-SULFUR PROTEIN, RISP, COMPLEX III SUBUNIT 5
 
Molecule 10 - MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN
    Chains: J, W
    EC Number: 1.10.2.2
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920
Asymmetric/Biological Unit : ABCDEFGHIJNOPQRSTUVW

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (10, 56)

Asymmetric/Biological Unit (10, 56)
No.NameCountTypeFull Name
1BOG5Ligand/IonB-OCTYLGLUCOSIDE
2CDL4Ligand/IonCARDIOLIPIN
3FES2Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4GOL2Ligand/IonGLYCEROL
5HEC2Ligand/IonHEME C
6HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
7IKR2Ligand/IonMETHYL (2E)-{2-[(4-IODO-2,5-DIMETHYLPHENOXY)METHYL]PHENYL}(METHOXYIMINO)ETHANOATE
8PEE6Ligand/Ion1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
9UNK27Mod. Amino Acid
10UQ2Ligand/IonCOENZYME Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-ISOMER

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN C:45 , ILE C:46 , GLY C:49 , LEU C:50 , ALA C:53 , ARG C:81 , HIS C:84 , ALA C:85 , LEU C:124 , THR C:127 , GLY C:131 , LEU C:134 , PRO C:135 , HIS C:183 , PHE C:184 , PRO C:187 , TYR C:274BINDING SITE FOR RESIDUE HEM C 501
02AC2SOFTWARETRP C:32 , GLY C:35 , LEU C:38 , ALA C:39 , PHE C:91 , HIS C:98 , ARG C:101 , SER C:107 , GLY C:117 , VAL C:118 , LEU C:120 , HIS C:197 , LEU C:198 , SER C:206 , ASN C:207 , HOH C:381 , HOH C:385 , UQ C:2002BINDING SITE FOR RESIDUE HEM C 502
03AC3SOFTWAREMET C:125 , PHE C:129 , TYR C:132 , VAL C:133 , GLY C:143 , ALA C:144 , ILE C:147 , LYS C:270 , PRO C:271 , GLU C:272 , TYR C:274 , PHE C:275 , TYR C:279BINDING SITE FOR RESIDUE IKR C 2001
04AC4SOFTWARESER C:18 , LEU C:19 , LEU C:22 , ILE C:28 , ALA C:39 , LEU C:198 , LEU C:201 , HIS C:202 , SER C:206 , ASP C:229 , HOH C:386 , HEM C:502BINDING SITE FOR RESIDUE UQ C 2002
05AC5SOFTWARESER C:29 , ALA C:30 , TRP C:31 , TYR C:105 , PEE C:2007 , CDL D:2003 , HIS F:72 , ARG G:40 , PHE G:41 , GLN G:44BINDING SITE FOR RESIDUE CDL C 2004
06AC6SOFTWARETRP C:31 , PHE C:96 , LEU C:97 , TYR C:104 , TYR C:105 , THR C:317 , TRP C:327 , CDL C:2004 , TYR F:29 , GLN G:44BINDING SITE FOR RESIDUE PEE C 2007
07AC7SOFTWARETYR A:442 , HIS C:222 , ILE C:230 , PEE E:2005BINDING SITE FOR RESIDUE PEE C 2008
08AC8SOFTWAREPHE C:64 , VAL C:67 , ASN C:256 , PHE C:257 , TYR D:115BINDING SITE FOR RESIDUE GOL C 2011
09AC9SOFTWAREVAL D:36 , CYS D:37 , CYS D:40 , HIS D:41 , ASN D:105 , ALA D:108 , PRO D:110 , ARG D:120 , TYR D:126 , PHE D:153 , ILE D:158 , GLY D:159 , MET D:160 , PRO D:163BINDING SITE FOR RESIDUE HEC D 501
10BC1SOFTWAREALA C:30 , ASN C:33 , LYS C:228 , LEU C:235 , CDL C:2004 , TYR D:220 , LYS D:223 , ARG D:224 , HIS F:72 , ARG F:73 , ARG G:40BINDING SITE FOR RESIDUE CDL D 2003
11BC2SOFTWARETYR C:76 , GLN D:200 , ARG D:203 , MET D:204 , LYS D:207 , BOG D:2091 , ASN E:53 , GLN E:57BINDING SITE FOR RESIDUE BOG D 2009
12BC3SOFTWAREARG D:203 , BOG D:2009BINDING SITE FOR RESIDUE BOG D 2091
13BC4SOFTWARECYS E:139 , HIS E:141 , LEU E:142 , CYS E:144 , CYS E:158 , HIS E:161 , SER E:163 , PRO E:175BINDING SITE FOR RESIDUE FES E 501
14BC5SOFTWARETYR A:442 , PHE C:227 , ILE C:230 , PEE C:2008 , THR E:40 , THR E:47 , LYS E:52 , PHE J:14 , GLU J:32BINDING SITE FOR RESIDUE PEE E 2005
15BC6SOFTWAREGLN P:45 , ILE P:46 , GLY P:49 , LEU P:50 , LEU P:52 , ALA P:53 , ARG P:81 , HIS P:84 , ALA P:85 , LEU P:124 , THR P:127 , ALA P:128 , GLY P:131 , LEU P:134 , PRO P:135 , HIS P:183 , PHE P:184 , PRO P:187BINDING SITE FOR RESIDUE HEM P 501
16BC7SOFTWARETRP P:32 , GLY P:35 , LEU P:38 , ALA P:39 , PHE P:91 , HIS P:98 , ARG P:101 , SER P:107 , THR P:113 , TRP P:114 , GLY P:117 , VAL P:118 , LEU P:120 , HIS P:197 , LEU P:198 , LEU P:201 , SER P:206 , ASN P:207 , HOH P:381 , HOH P:385BINDING SITE FOR RESIDUE HEM P 502
17BC8SOFTWAREMET P:14 , LEU P:198 , THR P:199 , HIS P:202BINDING SITE FOR RESIDUE BOG P 2010
18BC9SOFTWAREMET P:125 , ALA P:128 , PHE P:129 , TYR P:132 , VAL P:133 , GLY P:143 , ALA P:144 , ILE P:147 , LYS P:270 , PRO P:271 , GLU P:272 , TYR P:274 , PHE P:275 , TYR P:279BINDING SITE FOR RESIDUE IKR P 3001
19CC1SOFTWARELEU P:19 , LEU P:22 , ILE P:28 , MET P:43 , LEU P:198 , LEU P:201 , HIS P:202 , SER P:206 , PHE P:221 , ASP P:229 , HOH P:383BINDING SITE FOR RESIDUE UQ P 3002
20CC2SOFTWAREALA P:30 , TRP P:31 , TYR P:105 , PEE P:3007 , CDL Q:3003 , HIS S:72 , VAL T:37 , ARG T:40 , PHE T:41 , GLN T:44BINDING SITE FOR RESIDUE CDL P 3004
21CC3SOFTWARETRP P:31 , PHE P:96 , LEU P:97 , TYR P:104 , TYR P:105 , THR P:317 , TRP P:327 , CDL P:3004 , TYR S:29 , GLN T:44BINDING SITE FOR RESIDUE PEE P 3007
22CC4SOFTWARETYR N:442 , HIS P:222BINDING SITE FOR RESIDUE PEE P 3008
23CC5SOFTWAREPHE P:64 , VAL P:67 , ALA P:68 , ASN P:256 , PHE P:257 , TYR Q:115BINDING SITE FOR RESIDUE GOL P 3011
24CC6SOFTWAREVAL Q:36 , CYS Q:37 , CYS Q:40 , HIS Q:41 , ASN Q:105 , ALA Q:108 , PRO Q:110 , ARG Q:120 , TYR Q:126 , PHE Q:153 , ILE Q:158 , GLY Q:159 , MET Q:160 , PRO Q:163BINDING SITE FOR RESIDUE HEC Q 501
25CC7SOFTWAREALA P:30 , ASN P:33 , LYS P:228 , CDL P:3004 , TYR Q:220 , LYS Q:223 , ARG Q:224 , HIS S:72 , ARG S:73 , ARG T:40BINDING SITE FOR RESIDUE CDL Q 3003
26CC8SOFTWAREGLN Q:200 , ARG Q:203 , MET Q:204 , LYS Q:207 , ASN R:53 , GLN R:57BINDING SITE FOR RESIDUE BOG Q 3009
27CC9SOFTWAREGLN Q:200BINDING SITE FOR RESIDUE BOG Q 3091
28DC1SOFTWARECYS R:139 , HIS R:141 , LEU R:142 , CYS R:158 , HIS R:161 , SER R:163BINDING SITE FOR RESIDUE FES R 501
29DC2SOFTWARETYR N:442 , PHE P:227 , ILE P:230 , THR R:40 , THR R:47 , LYS R:52 , PHE W:14 , GLU W:32BINDING SITE FOR RESIDUE PEE R 3005

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1E:144 -E:160
2H:24 -H:68
3H:40 -H:54
4R:144 -R:160
5U:24 -U:68
6U:40 -U:54

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1His C:222 -Pro C:223
2His C:346 -Pro C:347
3Gly D:73 -Pro D:74
4His P:222 -Pro P:223
5His P:346 -Pro P:347
6Gly Q:73 -Pro Q:74

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3L72)

(-) PROSITE Motifs  (3, 5)

Asymmetric/Biological Unit (3, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTB_NTERPS51002 Cytochrome b/b6 N-terminal region profile.CYB_CHICK1-210  1C:1-210
2RIESKEPS51296 Rieske [2Fe-2S] iron-sulfur domain profile.UCRI_CHICK172-270
 		  2E:96-194
R:96-194
3CYTB_CTERPS51003 Cytochrome b/b6 C-terminal region profile.CYB_CHICK211-380
 		  2C:211-380
P:211-380

(-) Exons   (0, 0)

(no "Exon" information available for 3L72)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:444
 aligned with D0VX31_CHICK | D0VX31 from UniProtKB/TrEMBL  Length:446

    Alignment length:444
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440    
         D0VX31_CHICK     1 AATYAQTLQNIPETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPCAAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCALEESQIEKERGVILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRADLASYIDTHFKAPRMVLAAAGGISHKELVDAARQHFSGVSFTYKEDAVPILPRCRFTGSEIRARDDALPVAHVALAVEGPGWADPDNVVLHVANAIIGRYDRTFGGGKHLSSRLAALAVEHKLCHSFQTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQGEWMRLCTSTTESEVKRAKNHLRSAMVAQLDGTTPVCETIGSHLLNYGRRISLEEWDSRISAVDARMVRDVCSKYIYDKCPALAAVGPIEQLLDYNRIRSGMYWI 444
               SCOP domains d3l72a1 A:1-233 automated matches                                                                                                                                                                                                        d3l72a2 A:234-444 automated matches                                                                                                                                                                                 SCOP domains
               CATH domains -------------3l72A01 A:14-227 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                                            -----------3l72A02 A:239-442 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                                 -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh......eeee.....eeeeee....eeeeeeee............hhhhhhhhhh.......hhhhhhhhhhh...eeeeee....eeeeeeee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhh......hhhhh...........eeeeeee.....eeeeeeee......hhhhhhhhhhhhhheee....hhhhh.hhhhhhhhhh....eeeeeeee....eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhh.....eeeeee......hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3l72 A   1 AATYAQTLQNIPETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPCAAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCALEESQIEKERGVILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRADLASYIDTHFKAPRMVLAAAGGISHKELVDAARQHFSGVSFTYKEDAVPILPRCRFTGSEIRARDDALPVAHVALAVEGPGWADPDNVVLHVANAIIGRYDRTFGGGKHLSSRLAALAVEHKLCHSFQTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQGEWMRLCTSTTESEVKRAKNHLRSAMVAQLDGTTPVCETIGSHLLNYGRRISLEEWDSRISAVDARMVRDVCSKYIYDKCPALAAVGPIEQLLDYNRIRSGMYWI 444
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440    


Chain B from PDB  Type:PROTEIN  Length:421
 aligned with D0VX29_CHICK | D0VX29 from UniProtKB/TrEMBL  Length:441

    Alignment length:421
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440 
         D0VX29_CHICK    21 PGAEDLEITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFRITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQLKVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARMALVGIGVKHSDLKQVAEQFLNIRSGAGTSSAKATYWGGEIREQNGHSLVHAAVVTEGAAVGSAEANAFSVLQHVLGAGPLIKRGSSVTSKLYQGVAKATTQPFDASAFNVNYSDSGLFGFYTISQAAHAGEVIRAAMNQLKAAAQGGVTEEDVTKAKNQLKATYLMSVETAQGLLNEIGSEALLSGTHTAPSVVAQKIDSVTSADVVNAAKKFVSGKKSMAASGDLGSTPFLDEL 441
               SCOP domains d3l72b1 B:19-235 automated matches                                                                                                                                                                                       d3l72b2 B:236-439 automated matches                                                                                                                                                                          SCOP domains
               CATH domains 3l72B01 B:19-227 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                                       -----------3l72B02 B:239-439 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeee.....eeeeeeee..hhhhh.....hhhhhhhhh........hhhhhhhhhhh.....eeee....eeeeeeee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhh....hhhhh...hhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhh...................eeee....eeeeeeeee.......hhhhhhhhhhhhh............hhhhhhhhhhh...eeeeeeeeee..eeeeeeeeeee..hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeehhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l72 B  19 PGAEDLEITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFRITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQLKVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARMALVGIGVKHSDLKQVAEQFLNIRSGAGTSSAKATYWGGEIREQNGHSLVHAAVVTEGAAVGSAEANAFSVLQHVLGAGPLIKRGSSVTSKLYQGVAKATTQPFDASAFNVNYSDSGLFGFYTISQAAHAGEVIRAAMNQLKAAAQGGVTEEDVTKAKNQLKATYLMSVETAQGLLNEIGSEALLSGTHTAPSVVAQKIDSVTSADVVNAAKKFVSGKKSMAASGDLGSTPFLDEL 439
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438 


Chain C from PDB  Type:PROTEIN  Length:380
 aligned with CYB_CHICK | P18946 from UniProtKB/Swiss-Prot  Length:380

    Alignment length:380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380
            CYB_CHICK     1 MAPNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLMTQILTGLLLAMHYTADTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIFLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGITIIHLTFLHESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLMLTPFLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQTLFWLLVANLLILTWIGSQPVEHPFIIIGQMASLSYFTILLILFPTIGTLENKMLNY 380
               SCOP domains d3l72c1 C:1-261 automated matches                                                                                                                                                                                                                                    d3l72c2 C:262-380 automated matches                                                                                     SCOP domains
               CATH domains 3l72C00 C:1-380 Cytochrome Bc1 Complex; Chain C                                                                                                                                                                                                                                                                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhh.....eee...hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhh.eeehhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh.............hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CYTB_NTER  PDB: C:1-210 UniProt: 1-210                                                                                                                                                                            CYTB_CTER  PDB: C:211-380 UniProt: 211-380                                                                                                                                 PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l72 C   1 MAPNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLMTQILTGLLLAMHYTADTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIFLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGITIIHLTFLHESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLMLTPFLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQTLFWLLVANLLILTWIGSQPVEHPFIIIGQMASLSYFTILLILFPTIGTLENKMLNY 380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380


Chain D from PDB  Type:PROTEIN  Length:241
 aligned with D0VX26_CHICK | D0VX26 from UniProtKB/TrEMBL  Length:241

    Alignment length:241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
         D0VX26_CHICK     1 GELELHPPAFPWSHGGPLSALDHSSVRRGFQVYKQVCSACHSMDYVAFRNLIGVTHTEAEAKALAEEVEVQDGPDENGELFMRPGKISDYFPKPYPNPEAARAANNGALPPDLSYIVNARHGGEDYVFSLLTGYCDPPAGVVVREGLHYNPYFPGQAIGMAPPIYNEILEYDDGTPATMSQIAKDVCTFLRWAAEPEHDQRKRMGLKMLLISALLTSLLYYMKRHKWSVLKSRKMAYRPPK 241
               SCOP domains d3l72d1 D:1-195 automated matches                                                                                                                                                                  d3l72d2 D:196-241 automated matches            SCOP domains
               CATH domains 3l72D01 D:1-196 Cytochrome c                                                                                                                                                                        3l72D02 D:197-241                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhhhhhh......hhhhhh....hhhhhhhhhhh.eeee........eeee............hhhhhhhh..........hhhhhh.hhhhhhhhhhh...............ee.......ee...................hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l72 D   1 GELELHPPAFPWSHGGPLSALDHSSVRRGFQVYKQVCSACHSMDYVAFRNLIGVTHTEAEAKALAEEVEVQDGPDENGELFMRPGKISDYFPKPYPNPEAARAANNGALPPDLSYIVNARHGGEDYVFSLLTGYCDPPAGVVVREGLHYNPYFPGQAIGMAPPIYNEILEYDDGTPATMSQIAKDVCTFLRWAAEPEHDQRKRMGLKMLLISALLTSLLYYMKRHKWSVLKSRKMAYRPPK 241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 


Chain E from PDB  Type:PROTEIN  Length:196
 aligned with UCRI_CHICK | Q5ZLR5 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:196
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266      
           UCRI_CHICK    77 VHNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLEVPTYQFVGDDLVVVG 272
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3l72E01 E:1-64  [code=1.20.5.270, no name defined]              3l72E02 E:65-196 'Rieske'-like iron-sulphur domains                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..........hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh..eeehhhhh....eeeeee..eeeeeee...............................eeeee...................eee...eeee...........................eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------------------------------------------------------------------RIESKE  PDB: E:96-194 UniProt: 172-270                                                             -- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l72 E   1 VHNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLEVPTYQFVGDDLVVVG 196
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190      


Chain F from PDB  Type:PROTEIN  Length:101
 aligned with D0VX30_CHICK | D0VX30 from UniProtKB/TrEMBL  Length:110

    Alignment length:101
                                    19        29        39        49        59        69        79        89        99       109 
         D0VX30_CHICK    10 GRLMDRIRKWYYNAAGFNKYGLMRDDTLYEDDDVKEALKRLPEDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYLKEVIRERLEREAWNKK 110
               SCOP domains d3l72f_ F: automated matches                                                                          SCOP domains
               CATH domains 3l72F00 F:10-110 Cytochrome Bc1 Complex; Chain F                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.........hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 3l72 F  10 GRLMDRIRKWYYNAAGFNKYGLMRDDTLYEDDDVKEALKRLPEDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYLKEVIRERLEREAWNKK 110
                                    19        29        39        49        59        69        79        89        99       109 


Chain G from PDB  Type:PROTEIN  Length:80
 aligned with D0VX32_CHICK | D0VX32 from UniProtKB/TrEMBL  Length:81

    Alignment length:80
                                    11        21        31        41        51        61        71        81
         D0VX32_CHICK     2 IHFGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPADYENDQ  81
               SCOP domains d3l72g_ G: automated matches                                                     SCOP domains
               CATH domains 3l72G00 G:2-81  [code=1.20.5.210, no name defined]                               CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeee.hhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 3l72 G   2 IHFGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPADYENDQ  81
                                    11        21        31        41        51        61        71        81


Chain H from PDB  Type:PROTEIN  Length:70
 aligned with D0VX28_CHICK | D0VX28 from UniProtKB/TrEMBL  Length:77

    Alignment length:70
                                    17        27        37        47        57        67        77
         D0VX28_CHICK     8 EEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHKLFNKLK  77
               SCOP domains d3l72h_ H: automated matches                                           SCOP domains
               CATH domains 3l72H00 H:9-78  [code=1.10.287.20, no name defined]                    CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 3l72 H   9 EEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHKLFNKLK  78
                                    18        28        38        48        58        68        78


Chain I from PDB  Type:PROTEIN  Length:46
 aligned with UCRI_CHICK | Q5ZLR5 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:50
                                    35        45        55        65        75
           UCRI_CHICK    26 LKALAPAALRAEKVVLDLKRPLLCRESMSGRSARRDLVAGISLNAPASVR  75
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains 3l72I00 I:28-77     Cytochrome Bc1 Complex; Chain  CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ...............----....hhhhhh.........eeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------- Transcript
                 3l72 I  28 xxxxxxxxxxxxxxx----RPLLCRESMSGRSARRDLVAGISLNAPASVR  77
                            ||||||||37|||||   47        57        67        77
                           28-UNK|||37-UNK|   47                              
                            29-UNK|||38-UNK                                   
                             30-UNK|| 39-UNK                                  
                              31-UNK|  40-UNK                                 
                               32-UNK   41-UNK                                
                                33-UNK   42-UNK                               
                                 34-UNK                                       
                                  35-UNK                                      
                                   36-UNK                                     


Chain J from PDB  Type:PROTEIN  Length:61
 aligned with D0VX27_CHICK | D0VX27 from UniProtKB/TrEMBL  Length:61

    Alignment length:61
                                    10        20        30        40        50        60 
         D0VX27_CHICK     1 ALLRQAYSALFRRTSTFALTVVLGAVLFERAFDQGADAIFEHLNEGKLWKHIKHKYEASEE  61
               SCOP domains d3l72j_ J: automated matches                                  SCOP domains
               CATH domains 3l72J00 J:4-64  [code=1.20.5.260, no name defined]            CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 3l72 J   4 ALLRQAYSALFRRTSTFALTVVLGAVLFERAFDQGADAIFEHLNEGKLWKHIKHKYEASEE  64
                                    13        23        33        43        53        63 


Chain N from PDB  Type:PROTEIN  Length:442
 aligned with D0VX31_CHICK | D0VX31 from UniProtKB/TrEMBL  Length:446

    Alignment length:442
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442  
         D0VX31_CHICK     3 TYAQTLQNIPETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPCAAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCALEESQIEKERGVILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRADLASYIDTHFKAPRMVLAAAGGISHKELVDAARQHFSGVSFTYKEDAVPILPRCRFTGSEIRARDDALPVAHVALAVEGPGWADPDNVVLHVANAIIGRYDRTFGGGKHLSSRLAALAVEHKLCHSFQTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQGEWMRLCTSTTESEVKRAKNHLRSAMVAQLDGTTPVCETIGSHLLNYGRRISLEEWDSRISAVDARMVRDVCSKYIYDKCPALAAVGPIEQLLDYNRIRSGMYWI 444
               SCOP domains d3l72n1 N:3-233 automated matches                                                                                                                                                                                                      d3l72n2 N:234-444 automated matches                                                                                                                                                                                 SCOP domains
               CATH domains -----------3l72N01 N:14-227 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                                            -----------3l72N02 N:239-442 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                                 -- CATH domains
           Pfam domains (1) ---------------------Peptidase_M16-3l72N01 N:24-171                                                                                                                      ----Peptidase_M16_C-3l72N03 N:176-361                                                                                                                                                         ----------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------Peptidase_M16-3l72N02 N:24-171                                                                                                                      ----Peptidase_M16_C-3l72N04 N:176-361                                                                                                                                                         ----------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author hhhhhh......eeee.....eeeeee....eeeeeeee............hhhhhhhhhh.......hhhhhhhhhhh...eeeeee....eeeeeeee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhh......hhhhh...........eeeeeee.....eeeeeeee......hhhhhhhhhhhhhheee....hhhhh.hhhhhhhhhh....eeeeeeee....eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhh.....eeeeee......hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l72 N   3 TYAQTLQNIPETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPCAAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCALEESQIEKERGVILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRADLASYIDTHFKAPRMVLAAAGGISHKELVDAARQHFSGVSFTYKEDAVPILPRCRFTGSEIRARDDALPVAHVALAVEGPGWADPDNVVLHVANAIIGRYDRTFGGGKHLSSRLAALAVEHKLCHSFQTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQGEWMRLCTSTTESEVKRAKNHLRSAMVAQLDGTTPVCETIGSHLLNYGRRISLEEWDSRISAVDARMVRDVCSKYIYDKCPALAAVGPIEQLLDYNRIRSGMYWI 444
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442  


Chain O from PDB  Type:PROTEIN  Length:422
 aligned with D0VX29_CHICK | D0VX29 from UniProtKB/TrEMBL  Length:441

    Alignment length:422
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439  
         D0VX29_CHICK    20 CPGAEDLEITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFRITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQLKVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARMALVGIGVKHSDLKQVAEQFLNIRSGAGTSSAKATYWGGEIREQNGHSLVHAAVVTEGAAVGSAEANAFSVLQHVLGAGPLIKRGSSVTSKLYQGVAKATTQPFDASAFNVNYSDSGLFGFYTISQAAHAGEVIRAAMNQLKAAAQGGVTEEDVTKAKNQLKATYLMSVETAQGLLNEIGSEALLSGTHTAPSVVAQKIDSVTSADVVNAAKKFVSGKKSMAASGDLGSTPFLDEL 441
               SCOP domains d3l72o1 O:18-235 automated matches                                                                                                                                                                                        d3l72o2 O:236-439 automated matches                                                                                                                                                                          SCOP domains
               CATH domains 3l72O01 O:18-227 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                                        -----------3l72O02 O:239-439 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                               CATH domains
           Pfam domains (1) ----------------Peptidase_M16-3l72O01 O:34-180                                                                                                                     ----Peptidase_M16_C-3l72O03 O:185-364                                                                                                                                                   --------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------Peptidase_M16-3l72O02 O:34-180                                                                                                                     ----Peptidase_M16_C-3l72O04 O:185-364                                                                                                                                                   --------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ................eeeee.....eeeeeeee..hhhhh.....hhhhhhhhh........hhhhhhhhhhh.....eeee....eeeeeeee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhh....hhhhh...hhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhh.....................eeee....eeeeeeeee......hhhhhhhhhhhhhh............hhhhhhhhhhh...eeeeeeeeee..eeeeeeeeeee..hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeehhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l72 O  18 CPGAEDLEITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFRITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQLKVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARMALVGIGVKHSDLKQVAEQFLNIRSGAGTSSAKATYWGGEIREQNGHSLVHAAVVTEGAAVGSAEANAFSVLQHVLGAGPLIKRGSSVTSKLYQGVAKATTQPFDASAFNVNYSDSGLFGFYTISQAAHAGEVIRAAMNQLKAAAQGGVTEEDVTKAKNQLKATYLMSVETAQGLLNEIGSEALLSGTHTAPSVVAQKIDSVTSADVVNAAKKFVSGKKSMAASGDLGSTPFLDEL 439
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437  


Chain P from PDB  Type:PROTEIN  Length:379
 aligned with CYB_CHICK | P18946 from UniProtKB/Swiss-Prot  Length:380

    Alignment length:379
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371         
            CYB_CHICK     2 APNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLMTQILTGLLLAMHYTADTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIFLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGITIIHLTFLHESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLMLTPFLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQTLFWLLVANLLILTWIGSQPVEHPFIIIGQMASLSYFTILLILFPTIGTLENKMLNY 380
               SCOP domains d3l72p1 P:2-261 automated matches                                                                                                                                                                                                                                   d3l72p2 P:262-380 automated matches                                                                                     SCOP domains
               CATH domains 3l72P00 P:2-380 Cytochrome Bc1 Complex; Chain C                                                                                                                                                                                                                                                                                                                                             CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------Cytochrom_B_N_2-3l72P01 P:89-254                                                                                                                                      ----Cytochrom_B_C-3l72P03 P:259-360                                                                       -------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------Cytochrom_B_N_2-3l72P02 P:89-254                                                                                                                                      ----Cytochrom_B_C-3l72P04 P:259-360                                                                       -------------------- Pfam domains (2)
         Sec.struct. author .........hhhhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhh.eeehhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh.............hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CYTB_NTER  PDB: - UniProt: 1-210                                                                                                                                                                                 CYTB_CTER  PDB: P:211-380 UniProt: 211-380                                                                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l72 P   2 APNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLMTQILTGLLLAMHYTADTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIFLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGITIIHLTFLHESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLMLTPFLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQTLFWLLVANLLILTWIGSQPVEHPFIIIGQMASLSYFTILLILFPTIGTLENKMLNY 380
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371         


Chain Q from PDB  Type:PROTEIN  Length:241
 aligned with D0VX26_CHICK | D0VX26 from UniProtKB/TrEMBL  Length:241

    Alignment length:241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
         D0VX26_CHICK     1 GELELHPPAFPWSHGGPLSALDHSSVRRGFQVYKQVCSACHSMDYVAFRNLIGVTHTEAEAKALAEEVEVQDGPDENGELFMRPGKISDYFPKPYPNPEAARAANNGALPPDLSYIVNARHGGEDYVFSLLTGYCDPPAGVVVREGLHYNPYFPGQAIGMAPPIYNEILEYDDGTPATMSQIAKDVCTFLRWAAEPEHDQRKRMGLKMLLISALLTSLLYYMKRHKWSVLKSRKMAYRPPK 241
               SCOP domains d3l72q1 Q:1-195 automated matches                                                                                                                                                                  d3l72q2 Q:196-241 automated matches            SCOP domains
               CATH domains 3l72Q01 Q:1-196 Cytochrome c                                                                                                                                                                        3l72Q02 Q:197-241                             CATH domains
           Pfam domains (1) -----------Cytochrom_C1-3l72Q01 Q:12-230                                                                                                                                                                                              ----------- Pfam domains (1)
           Pfam domains (2) -----------Cytochrom_C1-3l72Q02 Q:12-230                                                                                                                                                                                              ----------- Pfam domains (2)
         Sec.struct. author .....................hhhhhhhhhhhhhhh..........hhhhhh....hhhhhhhhhhh.eeee........eeee............hhhhhhhh..........hhhhhh.hhhhhhhhhhh...............ee.......ee...................hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l72 Q   1 GELELHPPAFPWSHGGPLSALDHSSVRRGFQVYKQVCSACHSMDYVAFRNLIGVTHTEAEAKALAEEVEVQDGPDENGELFMRPGKISDYFPKPYPNPEAARAANNGALPPDLSYIVNARHGGEDYVFSLLTGYCDPPAGVVVREGLHYNPYFPGQAIGMAPPIYNEILEYDDGTPATMSQIAKDVCTFLRWAAEPEHDQRKRMGLKMLLISALLTSLLYYMKRHKWSVLKSRKMAYRPPK 241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 


Chain R from PDB  Type:PROTEIN  Length:196
 aligned with UCRI_CHICK | Q5ZLR5 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:196
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266      
           UCRI_CHICK    77 VHNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLEVPTYQFVGDDLVVVG 272
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3l72R01 R:1-64  [code=1.20.5.270, no name defined]              3l72R02 R:65-196 'Rieske'-like iron-sulphur domains                                                                                  CATH domains
           Pfam domains (1) UCR_TM-3l72R03 R:1-67                                              ----------------------------Rieske-3l72R01 R:96-188                                                                      -------- Pfam domains (1)
           Pfam domains (2) UCR_TM-3l72R04 R:1-67                                              ----------------------------Rieske-3l72R02 R:96-188                                                                      -------- Pfam domains (2)
         Sec.struct. author hhhhh..........hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh..eeee.hhh....eeeeee..eeeeeee.hhhhhhhhhh..........hhhhhh....eeeee..........ee.......eee...eeee..........................eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------------------------------------------------------------------RIESKE  PDB: R:96-194 UniProt: 172-270                                                             -- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l72 R   1 VHNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLEVPTYQFVGDDLVVVG 196
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190      


Chain S from PDB  Type:PROTEIN  Length:101
 aligned with D0VX30_CHICK | D0VX30 from UniProtKB/TrEMBL  Length:110

    Alignment length:101
                                    19        29        39        49        59        69        79        89        99       109 
         D0VX30_CHICK    10 GRLMDRIRKWYYNAAGFNKYGLMRDDTLYEDDDVKEALKRLPEDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYLKEVIRERLEREAWNKK 110
               SCOP domains d3l72s_ S: automated matches                                                                          SCOP domains
               CATH domains 3l72S00 S:10-110 Cytochrome Bc1 Complex; Chain F                                                      CATH domains
           Pfam domains (1) UCR_14kD-3l72S01 S:10-106                                                                        ---- Pfam domains (1)
           Pfam domains (2) UCR_14kD-3l72S02 S:10-106                                                                        ---- Pfam domains (2)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.........hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 3l72 S  10 GRLMDRIRKWYYNAAGFNKYGLMRDDTLYEDDDVKEALKRLPEDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYLKEVIRERLEREAWNKK 110
                                    19        29        39        49        59        69        79        89        99       109 


Chain T from PDB  Type:PROTEIN  Length:79
 aligned with D0VX32_CHICK | D0VX32 from UniProtKB/TrEMBL  Length:81

    Alignment length:79
                                    11        21        31        41        51        61        71         
         D0VX32_CHICK     2 IHFGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPADYEND  80
               SCOP domains d3l72t_ T: automated matches                                                    SCOP domains
               CATH domains 3l72T00 T:2-80  [code=1.20.5.210, no name defined]                              CATH domains
           Pfam domains (1) UcrQ-3l72T01 T:2-80                                                             Pfam domains (1)
           Pfam domains (2) UcrQ-3l72T02 T:2-80                                                             Pfam domains (2)
         Sec.struct. author .........eeeeeeee.hhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 3l72 T   2 IHFGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPADYEND  80
                                    11        21        31        41        51        61        71         


Chain U from PDB  Type:PROTEIN  Length:67
 aligned with D0VX28_CHICK | D0VX28 from UniProtKB/TrEMBL  Length:77

    Alignment length:67
                                    20        30        40        50        60        70       
         D0VX28_CHICK    11 ELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHKLFNKLK  77
               SCOP domains d3l72u_ U: automated matches                                        SCOP domains
               CATH domains 3l72U00 U:12-78  [code=1.10.287.20, no name defined]                CATH domains
           Pfam domains (1) --UCR_hinge-3l72U01 U:14-78                                         Pfam domains (1)
           Pfam domains (2) --UCR_hinge-3l72U02 U:14-78                                         Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 3l72 U  12 ELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHKLFNKLK  78
                                    21        31        41        51        61        71       


Chain V from PDB  Type:PROTEIN  Length:43
 aligned with UCRI_CHICK | Q5ZLR5 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:50
                                    35        45        55        65        75
           UCRI_CHICK    26 LKALAPAALRAEKVVLDLKRPLLCRESMSGRSARRDLVAGISLNAPASVR  75
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains 3l72V0 0 V:28      -77 Cytochrome Bc1 Complex; Cha CATH domains
           Pfam domains (1) -------------------Ubiq-Cytc-r-------------------- Pfam domains (1)
           Pfam domains (2) -------------------Ubiq-Cytc-r-------------------- Pfam domains (2)
         Sec.struct. author ......-......------....hhhhhh.........eeee.....ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------- Transcript
                 3l72 V  28 xxxxxx-xxxxxx------RPLLCRESMSGRSARRDLVAGISLNAPASVR  77
                            |||||| |37|||     47        57        67        77
                           28-UNK| ||38-UNK   47                              
                            29-UNK |||39-UNK                                  
                             30-UNK||| 40-UNK                                 
                              31-UNK||                                        
                               32-UNK|                                        
                                33-UNK                                        
                                  35-UNK                                      
                                   36-UNK                                     
                                    37-UNK                                    


Chain W from PDB  Type:PROTEIN  Length:60
 aligned with D0VX27_CHICK | D0VX27 from UniProtKB/TrEMBL  Length:61

    Alignment length:60
                                    10        20        30        40        50        60
         D0VX27_CHICK     1 ALLRQAYSALFRRTSTFALTVVLGAVLFERAFDQGADAIFEHLNEGKLWKHIKHKYEASE  60
               SCOP domains d3l72w_ W: automated matches                                 SCOP domains
               CATH domains 3l72W00 W:4-63  [code=1.20.5.260, no name defined]           CATH domains
           Pfam domains (1) --UCR_UQCRX_QCR9-3l72W01 W:6-60                          --- Pfam domains (1)
           Pfam domains (2) --UCR_UQCRX_QCR9-3l72W02 W:6-60                          --- Pfam domains (2)
         Sec.struct. author hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 3l72 W   4 ALLRQAYSALFRRTSTFALTVVLGAVLFERAFDQGADAIFEHLNEGKLWKHIKHKYEASE  63
                                    13        23        33        43        53        63
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (9, 24)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Membrane and cell surface proteins and peptides (2046)
(-)
Fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (36)
(-)
Fold: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (46)
(-)
Fold: Heme-binding four-helical bundle (113)
(-)
Fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (36)
(-)
Fold: Single transmembrane helix (568)

(-) CATH Domains  (11, 28)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (12, 28)

Asymmetric/Biological Unit
(-)
Clan: 2heme_cytochrom (31)
(-)
Clan: Cytochrome-c (108)
(-)
Clan: ISP-domain (54)
(-)
Clan: Peptidase_ME (35)
(-)
Clan: UcrQ-like (20)
(-)
Clan: no clan defined [family: Cytochrom_B_C] (27)
(-)
Clan: no clan defined [family: UCR_14kD] (20)
(-)
Clan: no clan defined [family: UCR_TM] (20)
(-)
Clan: no clan defined [family: UCR_UQCRX_QCR9] (20)
(-)
Clan: no clan defined [family: UCR_hinge] (20)
(-)
Clan: no clan defined [family: Ubiq-Cytc-red_N] (17)

(-) Gene Ontology  (24, 76)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,N   (D0VX31_CHICK | D0VX31)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006122    mitochondrial electron transport, ubiquinol to cytochrome c    The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
cellular component
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.

Chain B,O   (D0VX29_CHICK | D0VX29)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005750    mitochondrial respiratory chain complex III    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.

Chain C,P   (CYB_CHICK | P18946)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006122    mitochondrial electron transport, ubiquinol to cytochrome c    The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0022904    respiratory electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0045275    respiratory chain complex III    A protein complex that transfers electrons from ubiquinol to cytochrome c and translocates two protons across a membrane. The complex contains a core structure of three catalytic subunits: cytochrome b, the Rieske iron sulfur protein (ISP), and cytochrome c1, which are arranged in an integral membrane-bound dimeric complex; additional subunits are present, and vary among different species.

Chain D,Q   (D0VX26_CHICK | D0VX26)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.

Chain E,I,R,V   (UCRI_CHICK | Q5ZLR5)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016679    oxidoreductase activity, acting on diphenols and related substances as donors    Catalysis of an oxidation-reduction (redox) reaction in which a diphenol or related substance acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.

Chain F,S   (D0VX30_CHICK | D0VX30)
biological process
    GO:0006122    mitochondrial electron transport, ubiquinol to cytochrome c    The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005750    mitochondrial respiratory chain complex III    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.

Chain G,T   (D0VX32_CHICK | D0VX32)
molecular function
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.

Chain H,U   (D0VX28_CHICK | D0VX28)
molecular function
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006122    mitochondrial electron transport, ubiquinol to cytochrome c    The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.

Chain J,W   (D0VX27_CHICK | D0VX27)
molecular function
    GO:0008121    ubiquinol-cytochrome-c reductase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006122    mitochondrial electron transport, ubiquinol to cytochrome c    The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005750    mitochondrial respiratory chain complex III    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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  Cis Peptide Bonds
    Gly D:73 - Pro D:74   [ RasMol ]  
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    His C:222 - Pro C:223   [ RasMol ]  
    His C:346 - Pro C:347   [ RasMol ]  
    His P:222 - Pro P:223   [ RasMol ]  
    His P:346 - Pro P:347   [ RasMol ]  
 

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  3l72
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  CYB_CHICK | P18946
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  1.10.2.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CYB_CHICK | P18946: 1bcc 1lly 2bcc 3bcc 3cwb 3h1h 3h1i 3h1j 3h1k 3h1l 3l70 3l71 3l73 3l74 3l75 3tgu 4u3f
        D0VX27_CHICK | D0VX27: 4u3f
        D0VX29_CHICK | D0VX29: 4u3f
        D0VX31_CHICK | D0VX31: 4u3f
        UCRI_CHICK | Q5ZLR5: 1bcc 2bcc 3bcc 3cwb 3h1h 3h1i 3h1j 3h1k 3h1l 3l70 3l71 3l73 3l74 3l75 3tgu 4u3f
UniProtKB/TrEMBL
        D0VX26_CHICK | D0VX26: 3h1h 3h1i 3h1j 3h1k 3h1l 3l70 3l71 3l73 3l74 3l75 3tgu 4u3f
        D0VX27_CHICK | D0VX27: 3cwb 3h1h 3h1i 3h1k 3h1l 3l70 3l71 3l73 3l74 3l75 3tgu
        D0VX28_CHICK | D0VX28: 3cwb 3h1j 3h1k 3h1l 3l70 3l71 3l73 3l74 3l75 3tgu 4u3f
        D0VX29_CHICK | D0VX29: 3cwb 3h1i 3h1j 3h1k 3h1l 3l70 3l71 3l73 3l74 3l75 3tgu
        D0VX30_CHICK | D0VX30: 3cwb 3h1i 3h1j 3h1k 3h1l 3l70 3l71 3l73 3l74 3l75 3tgu 4u3f
        D0VX31_CHICK | D0VX31: 3cwb 3h1h 3h1i 3h1k 3h1l 3l70 3l71 3l73 3l74 3l75 3tgu
        D0VX32_CHICK | D0VX32: 3cwb 3h1h 3h1j 3h1k 3h1l 3l70 3l71 3l73 3l74 3l75 3tgu 4u3f

(-) Related Entries Specified in the PDB File

3l70 3l71 3l73 3l74 3l75