Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)NMR Structure - manually
(-)NMR Structure - model 1
(-)NMR Structure - all models
collapse expand < >
Image NMR Structure - manually
NMR Structure - manually  (Jmol Viewer)
Image NMR Structure - model 1
NMR Structure - model 1  (Jmol Viewer)
Image NMR Structure - all models
NMR Structure - all models  (Jmol Viewer)

(-) Description

Title :  SOLUTION STRUCTURE OF THE WILSON ATPASE N-DOMAIN IN THE PRESENCE OF ATP
 
Authors :  O. Dmitriev, R. Tsivkovskii, F. Abildgaard, C. T. Morgan, J. L. Markley, S. Lutsenko
Date :  19 Aug 05  (Deposition) - 28 Feb 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Atpase, Wilson Disease, P-Type Atpase, Atp7B, Copper Transport, Nucleotide Binding, Atp Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  O. Dmitriev, R. Tsivkovskii, F. Abildgaard, C. T. Morgan, J. L. Markley, S. Lutsenko
Solution Structure Of The N-Domain Of Wilson Disease Protein: Distinct Nucleotide-Binding Environment And Effects Of Disease Mutations
Proc. Natl. Acad. Sci. Usa V. 103 5302 2006
PubMed-ID: 16567646  |  Reference-DOI: 10.1073/PNAS.0507416103
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - WILSON DISEASE ATPASE
    ChainsA
    EC Number3.6.3.4
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPTYB12-N-ABD
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentN-DOMAIN
    GeneATP7B
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCOPPER PUMP 2, WILSON DISEASE-ASSOCIATED PROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (10x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2ARF)

(-) Sites  (0, 0)

(no "Site" information available for 2ARF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ARF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ARF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (61, 61)

NMR Structure (61, 61)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_044474T1029IATP7B_HUMANDisease (WD)  ---AA1032I
02UniProtVAR_000753G1035VATP7B_HUMANDisease (WD)  ---AM1035V
03UniProtVAR_075337V1036IATP7B_HUMANDisease (WD)761147984AV1036I
04UniProtVAR_010015R1038KATP7B_HUMANDisease (WD)59959366AR1038K
05UniProtVAR_009015R1041PATP7B_HUMANDisease (WD)  ---AR1041P
06UniProtVAR_000754R1041WATP7B_HUMANUnclassified (WD)746485916AR1041W
07UniProtVAR_000755L1043PATP7B_HUMANDisease (WD)  ---AL1043P
08UniProtVAR_009016P1052LATP7B_HUMANDisease (WD)778543794AP1052L
09UniProtVAR_076704A1058VATP7B_HUMANUnclassified (WD)  ---AA1058V
10UniProtVAR_009017G1061EATP7B_HUMANDisease (WD)764131178AG1061E
11UniProtVAR_009018A1063VATP7B_HUMANDisease (WD)587783309AA1063V
12UniProtVAR_000756E1064AATP7B_HUMANDisease (WD)374094065AE1064A
13UniProtVAR_000757E1064KATP7B_HUMANDisease (WD)376910645AE1064K
14UniProtVAR_044475A1065PATP7B_HUMANDisease (WD)  ---AA1065P
15UniProtVAR_009019E1068GATP7B_HUMANDisease (WD)  ---AE1068G
16UniProtVAR_000758H1069QATP7B_HUMANDisease (WD)76151636AH1069Q
17UniProtVAR_076705P1070SATP7B_HUMANUnclassified (WD)  ---AP1070S
18UniProtVAR_076706A1074VATP7B_HUMANUnclassified (WD)  ---AA1074V
19UniProtVAR_000759L1083FATP7B_HUMANDisease (WD)  ---AL1083F
20UniProtVAR_000760G1089EATP7B_HUMANDisease (WD)  ---AG1089E
21UniProtVAR_000761G1089VATP7B_HUMANDisease (WD)  ---AG1089V
22UniProtVAR_076747C1091YATP7B_HUMANUnclassified (WD)778825095AC1091Y
23UniProtVAR_023029F1094LATP7B_HUMANDisease (WD)  ---AF1094L
24UniProtVAR_009020Q1095PATP7B_HUMANDisease (WD)  ---AQ1095P
25UniProtVAR_023030P1098RATP7B_HUMANDisease (WD)  ---AP1098R
26UniProtVAR_023031G1099SATP7B_HUMANDisease (WD)761632029AG1099S
27UniProtVAR_000762G1101RATP7B_HUMANDisease (WD)786204483AG1101R
28UniProtVAR_000763I1102TATP7B_HUMANDisease (WD)560952220AI1102T
29UniProtVAR_009021C1104FATP7B_HUMANDisease (WD)  ---AC1104F
30UniProtVAR_076816C1104SATP7B_HUMANDisease (WD)  ---AC1104S
31UniProtVAR_044476C1104YATP7B_HUMANDisease (WD)764041557AC1104Y
32UniProtVAR_010017V1106DATP7B_HUMANDisease (WD)775541743AV1106D
33UniProtVAR_044477V1106IATP7B_HUMANUnclassified (WD)541208827AV1106I
34UniProtVAR_000764V1109MATP7B_HUMANPolymorphism759109027AV1109M
35UniProtVAR_023032G1111DATP7B_HUMANDisease (WD)182659444AG1111D
36UniProtVAR_076817L1113MATP7B_HUMANUnclassified (WD)  ---AL1113M
37UniProtVAR_077617E1136KATP7B_HUMANUnclassified (WD)  ---AE1136K
38UniProtVAR_000765V1140AATP7B_HUMANPolymorphism1801249AV1140A
39UniProtVAR_000766Q1142HATP7B_HUMANDisease (WD)778749563AQ1142H
40UniProtVAR_023033T1143NATP7B_HUMANPolymorphism587783313AT1143N
41UniProtVAR_000767V1146MATP7B_HUMANDisease (WD)  ---AV1146M
42UniProtVAR_000768I1148TATP7B_HUMANDisease (WD)60431989AI1148T
43UniProtVAR_058930G1149AATP7B_HUMANDisease (WD)  ---AG1149A
44UniProtVAR_077618G1149EATP7B_HUMANUnclassified (WD)  ---AG1149E
45UniProtVAR_075338R1151CATP7B_HUMANDisease (WD)755554442AR1151C
46UniProtVAR_009022R1151HATP7B_HUMANDisease (WD)377297166AR1151H
47UniProtVAR_000769W1153CATP7B_HUMANDisease (WD)  ---AW1153C
48UniProtVAR_010018W1153RATP7B_HUMANDisease (WD)  ---AW1153R
49UniProtVAR_058931D1164NATP7B_HUMANDisease (WD)867107727AD1164N
50UniProtVAR_023034A1168SATP7B_HUMANDisease (WD)777879359AA1168S
51UniProtVAR_009023M1169TATP7B_HUMANDisease (WD)  ---AM1169T
52UniProtVAR_000770M1169VATP7B_HUMANDisease (WD)749085322AM1169V
53UniProtVAR_058932E1173GATP7B_HUMANDisease (WD)  ---AE1173G
54UniProtVAR_009024E1173KATP7B_HUMANDisease (WD)756029120AE1173K
55UniProtVAR_044478G1176EATP7B_HUMANDisease (WD)  ---AG1176E
56UniProtVAR_010019G1176RATP7B_HUMANDisease (WD)137853279AG1176R
57UniProtVAR_076748T1178AATP7B_HUMANUnclassified (WD)  ---AT1178A
58UniProtVAR_000771A1183GATP7B_HUMANDisease (WD)587783315AA1183G
59UniProtVAR_000772A1183TATP7B_HUMANUnclassified (WD)  ---AA1183T
60UniProtVAR_000773G1186CATP7B_HUMANDisease (WD)  ---AG1186C
61UniProtVAR_000774G1186SATP7B_HUMANUnclassified (WD)786204547AG1186S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ARF)

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002428391ENSE00002179667chr13:52585630-52585423208ATP7B_HUMAN1-17170--
1.5bENST000002428395bENSE00001793840chr13:52549304-525480711234ATP7B_HUMAN18-4294120--
1.6ENST000002428396ENSE00001750372chr13:52544885-52544628258ATP7B_HUMAN429-515870--
1.7ENST000002428397ENSE00001626066chr13:52542743-52542580164ATP7B_HUMAN515-569550--
1.8aENST000002428398aENSE00001663793chr13:52539169-52539008162ATP7B_HUMAN570-623540--
1.9ENST000002428399ENSE00001778246chr13:52536049-5253597377ATP7B_HUMAN624-649260--
1.10ENST0000024283910ENSE00001797943chr13:52534458-52534284175ATP7B_HUMAN649-707590--
1.11ENST0000024283911ENSE00001661412chr13:52532680-52532447234ATP7B_HUMAN708-785780--
1.12ENST0000024283912ENSE00001780518chr13:52531743-5253165292ATP7B_HUMAN786-816310--
1.13ENST0000024283913ENSE00001691729chr13:52524535-52524408128ATP7B_HUMAN816-859440--
1.14ENST0000024283914ENSE00001628540chr13:52524297-52524143155ATP7B_HUMAN859-910520--
1.15ENST0000024283915ENSE00001610847chr13:52523932-52523798135ATP7B_HUMAN911-955450--
1.16bENST0000024283916bENSE00001682155chr13:52520614-52520420195ATP7B_HUMAN956-1020650--
1.17ENST0000024283917ENSE00001721174chr13:52518427-52518245183ATP7B_HUMAN1021-1081611A:1032-1081 (gaps)53
1.18ENST0000024283918ENSE00001706162chr13:52516690-52516522169ATP7B_HUMAN1082-1138571A:1082-113857
1.19aENST0000024283919aENSE00001770820chr13:52515360-52515217144ATP7B_HUMAN1138-1186491A:1138-118649
1.20ENST0000024283920ENSE00001687534chr13:52513329-52513187143ATP7B_HUMAN1186-1233481A:1186-119611
1.21ENST0000024283921ENSE00001595712chr13:52511815-52511612204ATP7B_HUMAN1234-1301680--
1.22ENST0000024283922ENSE00001612752chr13:52511529-52511412118ATP7B_HUMAN1302-1341400--
1.23ENST0000024283923ENSE00001665491chr13:52509831-52509729103ATP7B_HUMAN1341-1375350--
1.24bENST0000024283924bENSE00001813320chr13:52509165-525068092357ATP7B_HUMAN1375-1465910--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:165
 aligned with ATP7B_HUMAN | P35670 from UniProtKB/Swiss-Prot  Length:1465

    Alignment length:168
                                  1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188        
         ATP7B_HUMAN   1029 TGTITHGVPRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAGSLPAEKDAVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIAD 1196
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..---.....eeeeee.......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......eeeeeee...eeeeeeehhhhhhh............................eeeeeeehhhhhhhhhh..hhhhhhhhhhhhh...eeeeeee..eeeeeeee.. Sec.struct. author
             SAPs(SNPs) (1) I-----VI-K--P-P--------L-----V--E-VAP--GQS---V--------F-----E-Y--LP--RS-RT-F-D--M-D-M----------------------K---A-HN--M-TA-C-C----------N---ST---G--E-A----G--C---------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------W----------------------K------------------------V--------------S-I------------------------------------------E-H-R---------------V---K--R------T--S---------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------------Y-------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.17  PDB: A:1032-1081 (gaps) UniProt: 1021-1081Exon 1.18  PDB: A:1082-1138 UniProt: 1082-1138           -----------------------------------------------Exon 1.20   Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------Exon 1.19a  PDB: A:1138-1186 UniProt: 1138-1186  ---------- Transcript 1 (2)
                2arf A 1032 AG---HMVPRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAGSLPAEKDAVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIAD 1196
                             |   |1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188        
                             |   |                                                                                                                                                                  
                          1033   |                                                                                                                                                                  
                              1034                                                                                                                                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ARF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ARF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ARF)

(-) Gene Ontology  (43, 43)

NMR Structure(hide GO term definitions)
Chain A   (ATP7B_HUMAN | P35670)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0019829    cation-transporting ATPase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in).
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0005375    copper ion transmembrane transporter activity    Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other.
    GO:0004008    copper-exporting ATPase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) -> ADP + phosphate + Cu2+(out).
    GO:0043682    copper-transporting ATPase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+ = ADP + phosphate + Cu2+, directly driving the transport of the copper ions across a membrane.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006812    cation transport    The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006878    cellular copper ion homeostasis    Any process involved in the maintenance of an internal steady state of copper ions at the level of a cell.
    GO:0006882    cellular zinc ion homeostasis    Any process involved in the maintenance of an internal steady state of zinc ions at the level of a cell.
    GO:0007623    circadian rhythm    Any biological process in an organism that recurs with a regularity of approximately 24 hours.
    GO:0060003    copper ion export    The directed movement of copper ions out of a cell or organelle.
    GO:0015677    copper ion import    The directed movement of copper ions into a cell or organelle.
    GO:0035434    copper ion transmembrane transport    The directed movement of copper cation across a membrane.
    GO:0006825    copper ion transport    The directed movement of copper (Cu) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015680    intracellular copper ion transport    The directed movement of copper (Cu) ions within a cell.
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0007595    lactation    The regulated release of milk from the mammary glands and the period of time that a mother lactates to feed her young.
    GO:0030001    metal ion transport    The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0051591    response to cAMP    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.
    GO:0046688    response to copper ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus.
    GO:0010043    response to zinc ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
    GO:0051208    sequestering of calcium ion    The process of binding or confining calcium ions such that they are separated from other components of a biological system.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0005923    bicellular tight junction    An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005770    late endosome    A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0005802    trans-Golgi network    The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
    GO:0032588    trans-Golgi network membrane    The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.

 Visualization

(-) Interactive Views

NMR Structure
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2arf)
 
  Sites
(no "Sites" information available for 2arf)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2arf)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2arf
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ATP7B_HUMAN | P35670
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.6.3.4
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  277900
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  ATP7B_HUMAN | P35670
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATP7B_HUMAN | P356702ew9 2koy 2lqb 2n7y 2rop

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2ARF)