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(-) Description

Title :  STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A PHAGE PROTEIN (PHBC6A51) FROM BACILLUS CEREUS ATCC 14579
 
Authors :  R. Zhang, G. Joachimiak, F. Collart, A. Joachimiak, Midwest Center F Structural Genomics (Mcsg)
Date :  12 Aug 05  (Deposition) - 27 Sep 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I
Biol. Unit 1:  A,B,C,D,E,F,G,H,I  (2x)
Biol. Unit 2:  A,B,C,D,E,F,G,H,I  (1x)
Keywords :  Structural Genomics, Nine-Fold Ncs. , Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, G. Joachimiak, F. Collart, A. Joachimiak
The Crystal Structure Of A Phage Protein (Phbc6A51) From Bacillus Cereus Atcc 14579
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHAGE PROTEIN
    Chains: A, B, C, D, E, F, G, H, I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDM68
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 226900
    Strain: ATCC 14579
    Synonym: BACTERIOPHAGE PHBC6A51

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABCDEFGHI
Biological Unit 1 (2x): ABCDEFGHI
Biological Unit 2 (1x): ABCDEFGHI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2AO9)

(-) Sites  (0, 0)

(no "Site" information available for 2AO9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AO9)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu G:129 -Gly G:130

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AO9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AO9)

(-) Exons   (0, 0)

(no "Exon" information available for 2AO9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:117
 aligned with Q81ES4_BACCR | Q81ES4 from UniProtKB/TrEMBL  Length:155

    Alignment length:120
                                    22        32        42        52        62        72        82        92       102       112       122       132
         Q81ES4_BACCR    13 MMAKLDELKQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDL 132
               SCOP domains d2ao9a1 A:13-132 Phage protein    BC1890                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhh..hhhhhhhhhhhhhhhhh.---....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ao9 A  13 MMAKLDELKQKLTAKQIQAAYLLVENELME---EEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDL 132
                                    22        32        42   |    52        62        72        82        92       102       112       122       132
                                                        42  46                                                                                      


Chain B from PDB  Type:PROTEIN  Length:114
 aligned with Q81ES4_BACCR | Q81ES4 from UniProtKB/TrEMBL  Length:155

    Alignment length:118
                                    23        33        43        53        63        73        83        93       103       113       123        
         Q81ES4_BACCR    14 MAKLDELKQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGD 131
               SCOP domains d2ao9b_ B: Phage protein BC18    90                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh..hhhhhhhhhhhhhhhhh.----...hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2ao9 B  14 MAKLDELKQKLTAKQIQAAYLLVENELME----EKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGD 131
                                    23        33        |-   |    53        63        73        83        93       103       113       123        
                                                       42   47                                                                                    


Chain C from PDB  Type:PROTEIN  Length:117
 aligned with Q81ES4_BACCR | Q81ES4 from UniProtKB/TrEMBL  Length:155

    Alignment length:119
                                    23        33        43        53        63        73        83        93       103       113       123         
         Q81ES4_BACCR    14 MAKLDELKQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDL 132
               SCOP domains d2ao9c_ C: Phage protein BC189  0                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh..hhhhhhhhhhhhhhhhh..--....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 2ao9 C  14 MAKLDELKQKLTAKQIQAAYLLVENELMES--EEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDL 132
                                    23        33        43  |     53        63        73        83        93       103       113       123         
                                                        43 46                                                                                      


Chain D from PDB  Type:PROTEIN  Length:107
 aligned with Q81ES4_BACCR | Q81ES4 from UniProtKB/TrEMBL  Length:155

    Alignment length:110
                                    32        42        52        62        72        82        92       102       112       122       132
         Q81ES4_BACCR    23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDL 132
               SCOP domains d2ao9d_ D: Phage pro   tein BC1890                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.---....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2ao9 D  23 KLTAKQIQAAYLLVENELME---EEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDL 132
                                    32        42   |    52        62        72        82        92       102       112       122       132
                                              42  46                                                                                      


Chain E from PDB  Type:PROTEIN  Length:115
 aligned with Q81ES4_BACCR | Q81ES4 from UniProtKB/TrEMBL  Length:155

    Alignment length:119
                                    23        33        43        53        63        73        83        93       103       113       123         
         Q81ES4_BACCR    14 MAKLDELKQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDL 132
               SCOP domains d2ao9e_ E: Phage protein BC18    90                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh..hhhhhhhhhhhhhhhhh.----...hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 2ao9 E  14 MAKLDELKQKLTAKQIQAAYLLVENELME----EKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDL 132
                                    23        33        |-   |    53        63        73        83        93       103       113       123         
                                                       42   47                                                                                     


Chain F from PDB  Type:PROTEIN  Length:110
 aligned with Q81ES4_BACCR | Q81ES4 from UniProtKB/TrEMBL  Length:155

    Alignment length:116
                                    25        35        45        55        65        75        85        95       105       115       125      
         Q81ES4_BACCR    16 KLDELKQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGD 131
               SCOP domains d2ao9f_ F: Phage protein B      C1890                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh------..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 2ao9 F  16 KLDELKQKLTAKQIQAAYLLVENELM------KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGD 131
                                    25        35     |   -  |     55        65        75        85        95       105       115       125      
                                                    41     48                                                                                   


Chain G from PDB  Type:PROTEIN  Length:106
 aligned with Q81ES4_BACCR | Q81ES4 from UniProtKB/TrEMBL  Length:155

    Alignment length:109
                                    33        43        53        63        73        83        93       103       113       123         
         Q81ES4_BACCR    24 LTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDL 132
               SCOP domains d2ao9g_ G: Phage pr   otein BC1890                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.---....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2ao9 G  24 LTAKQIQAAYLLVENELME---EEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDL 132
                                    33        |-  |     53        63        73        83        93       103       113       123         
                                             42  46                                                                                      


Chain H from PDB  Type:PROTEIN  Length:114
 aligned with Q81ES4_BACCR | Q81ES4 from UniProtKB/TrEMBL  Length:155

    Alignment length:116
                                    24        34        44        54        64        74        84        94       104       114       124      
         Q81ES4_BACCR    15 AKLDELKQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEG 130
               SCOP domains d2ao9h_ H: Phage protein BC18  90                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh..hhhhhhhhhhhhhhhhh..--.....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 2ao9 H  15 AKLDELKQKLTAKQIQAAYLLVENELMES--EEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEG 130
                                    24        34        |- |      54        64        74        84        94       104       114       124      
                                                       43 46                                                                                    


Chain I from PDB  Type:PROTEIN  Length:99
 aligned with Q81ES4_BACCR | Q81ES4 from UniProtKB/TrEMBL  Length:155

    Alignment length:111
                                    32        42        52        62        72        82        92       102       112       122       132 
         Q81ES4_BACCR    23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDLG 133
               SCOP domains d2ao9i_ I: Phage p       rotein BC1890                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..-------..hhhhhhhhhh.hhhhhhhhh-----..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 2ao9 I  23 KLTAKQIQAAYLLVENEL-------KRTQDEMANELGINRTTLWEWR-----FIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLLTDKKVIEGDLG 133
                                    32       | -     |  52        62      |  -  |     82        92       102       112       122       132 
                                            40      48                   69    75
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 9)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2AO9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AO9)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I   (Q81ES4_BACCR | Q81ES4)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

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  Cis Peptide Bonds
    Glu G:129 - Gly G:130   [ RasMol ]  
 
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 Related Entries

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