1ZZ9 - JenaLib

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Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF FEII HPPE

Authors :   L. J. Higgins, F. Yan, P. Liu, H. W. Liu, C. L. Drennan

Date :   13 Jun 05 (Deposition) - 26 Jul 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: C  (3x)
Biol. Unit 3: C  (4x)

Keywords :   Mononuclear Iron Enzyme, Cupin, Holo-Hppe, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. J. Higgins, F. Yan, P. Liu, H. W. Liu, C. L. Drennan
Structural Insight Into Antibiotic Fosfomycin Biosynthesis By A Mononuclear Iron Enzyme
Nature V. 437 838 2005
PubMed-ID: 16015285 | Reference-DOI: 10.1038/NATURE03924

Molecule 1 - HYDROXYPROPYLPHOSPHONIC ACID EPOXIDASE
	Chains	:	A, B, C
	EC Number	:	1.14.-.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET24B
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	FOM4
	Organism Scientific	:	STREPTOMYCES WEDMORENSIS
	Organism Taxid	:	43759

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (3x)	:			C
Biological Unit 3 (4x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	FE2	3	Ligand/Ion	FE (II) ION
2	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	FE2	4	Ligand/Ion	FE (II) ION
2	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	FE2	3	Ligand/Ion	FE (II) ION
2	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 8)

No.	Name	Count	Type	Full Name
1	FE2	4	Ligand/Ion	FE (II) ION
2	SO4	4	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:138 , GLU A:142 , HIS A:180 , HOH A:203 , HOH A:232 , HOH A:233	BINDING SITE FOR RESIDUE FE2 A 199
2	AC2	SOFTWARE	HIS B:138 , GLU B:142 , HIS B:180 , HOH B:204 , HOH B:205	BINDING SITE FOR RESIDUE FE2 B 199
3	AC3	SOFTWARE	HIS C:138 , GLU C:142 , HIS C:180 , HOH C:243 , HOH C:244	BINDING SITE FOR RESIDUE FE2 C 199
4	AC4	SOFTWARE	ARG B:90 , VAL B:121 , LYS B:192	BINDING SITE FOR RESIDUE SO4 B 200
5	AC5	SOFTWARE	ARG A:90 , PHE A:145 , LYS A:192 , HOH A:230 , HOH A:231 , HOH B:221	BINDING SITE FOR RESIDUE SO4 A 200
6	AC6	SOFTWARE	ARG C:90 , PHE C:145 , HOH C:241 , HOH C:242	BINDING SITE FOR RESIDUE SO4 C 200

(no "SS Bond" information available for 1ZZ9)

(no "Cis Peptide Bond" information available for 1ZZ9)

(no "SAP(SNP)/Variant" information available for 1ZZ9)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_CROC1	PS50943	Cro/C1-type HTH domain profile.	HPPE_STRWE	15-70	3	A:15-70 B:15-70 C:15-70

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_CROC1	PS50943	Cro/C1-type HTH domain profile.	HPPE_STRWE	15-70	4	A:15-70 B:15-70 -

Biological Unit 2 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_CROC1	PS50943	Cro/C1-type HTH domain profile.	HPPE_STRWE	15-70	3	- - C:15-70

Biological Unit 3 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_CROC1	PS50943	Cro/C1-type HTH domain profile.	HPPE_STRWE	15-70	4	- - C:15-70

(no "Exon" information available for 1ZZ9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:192
 aligned with HPPE_STRWE | Q56185 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:193
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195   
           HPPE_STRWE     6 TASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGVRDNVDYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVNF 198
               SCOP domains d1zz9a1 A:6-76                                                         d1zz9a2 A:77-198 Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhh.......hhhhhhhhhhhh..hhhhhh....................eeeeee..eeeeeeee..........eeeeeee...hhhhh.........eeeeeee..eeeee....-.eeeee....eeee.....eeeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------HTH_CROC1  PDB: A:15-70 UniProt: 15-70                  -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zz9 A   6 TASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGVRDNVDYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKE-PKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVNF 198
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155   | | 165       175       185       195   
                                                                                                                                                                                   159 |                                     
                                                                                                                                                                                     161

Chain B from PDB  Type:PROTEIN  Length:193
 aligned with HPPE_STRWE | Q56185 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:193
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195   
           HPPE_STRWE     6 TASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGVRDNVDYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVNF 198
               SCOP domains d1zz9b1 B:6-76                                                         d1zz9b2 B:77-198 Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhh.......hhhhhhhhhhhh..hhhhhh..............hhhhh.eeeeee..eeeeeeee..........eeeeeee...hhhhh........eeeeeeee..eeeeee....eeeeee....eeee.....eeeee......eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------HTH_CROC1  PDB: B:15-70 UniProt: 15-70                  -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zz9 B   6 TASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGVRDNVDYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVNF 198
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195

Chain C from PDB  Type:PROTEIN  Length:190
 aligned with HPPE_STRWE | Q56185 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:193
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195   
           HPPE_STRWE     6 TASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGVRDNVDYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVNF 198
               SCOP domains d1zz9c1 C:6-76                                                         d1zz9c2 C:77-198 Hyd   roxypropylphosphonic acid epoxidase Fom4, C-terminal domain                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhh.......hhhhhhhhhhhh..hhhhhh..............hhhhh.eeee.---...eeeee..........eeeeeee.................eeeeeee..eeeee......eeeee....eeee.....eeeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------HTH_CROC1  PDB: C:15-70 UniProt: 15-70                  -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zz9 C   6 TASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGV---VDYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVNF 198
                                    15        25        35        45        55        65        75        85        95|   |  105       115       125       135       145       155       165       175       185       195   
                                                                                                                     96 100

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 1ZZ9)

(no "Pfam Domain" information available for 1ZZ9)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (HPPE_STRWE | Q56185)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0051213	dioxygenase activity	Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
	GO:0008198	ferrous iron binding	Interacting selectively and non-covalently with ferrous iron, Fe(II).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water.
	GO:0043565	sequence-specific DNA binding	Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
biological process
	GO:0017000	antibiotic biosynthetic process	The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:1901766	phosphinothricin biosynthetic process	The chemical reactions and pathways resulting in the formation of phosphinothricin.
	GO:0051289	protein homotetramerization	The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1zz9)

Biological Units
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	1zz9
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	HPPE_STRWE \| Q56185
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	1.14.-.-
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	HPPE_STRWE \| Q56185
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UniProtKB/Swiss-Prot
	HPPE_STRWE \| Q56185	:	1zz6 1zz7 1zz8 1zzb 1zzc 2bnm 2bnn 2bno 3scf 3scg 3sch 4j1w 4j1x

1zz6	CRYSTAL STRUCTURE OF APO-HPPE
1zz7	CRYSTAL STRUCTURE OF FEII HPPE IN COMPLEX WITH SUBSTRATE FORM 1
1zz8	CRYSTAL STRUCTURE OF FEII HPPE IN COMPLEX WITH SUBSTRATE FORM 2
1zzb	CRYSTAL STRUCTURE OF COII HPPE IN COMPLEX WITH SUBSTRATE
1zzc	CRYSTAL STRUCTURE OF COII HPPE IN COMPLEX WITH TRIS BUFFER

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (2, 6)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 11)

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