Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH PRPP AND MAGNESIUM
 
Authors :  M. Marino, M. Deuss, R. Sterner, O. Mayans
Date :  09 Jun 05  (Deposition) - 23 May 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Anthranilate Posphoribosyltransferase, Trpd, Prpp (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Marino, M. Deuss, D. I. Svergun, P. V. Konarev, R. Sterner, O. Mayans
Structural And Mutational Analysis Of Substrate Complexation By Anthranilate Phosphoribosyltransferase From Sulfolobus Solfataricus.
J. Biol. Chem. V. 281 21410 2006
PubMed-ID: 16714288  |  Reference-DOI: 10.1074/JBC.M601403200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
    ChainsA, B, C, D
    EC Number2.4.2.18
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQE40
    Expression System StrainKK8
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism ScientificSULFOLOBUS SOLFATARICUS
    Organism Taxid2287

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A  D
Biological Unit 2 (1x) BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1MG8Ligand/IonMAGNESIUM ION
2PRP4Ligand/IonALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PRP2Ligand/IonALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PRP2Ligand/IonALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:77 , GLY A:79 , SER A:91 , PRP A:348BINDING SITE FOR RESIDUE MG A 346
02AC2SOFTWAREASP A:223 , GLU A:224 , PRP A:348BINDING SITE FOR RESIDUE MG A 347
03AC3SOFTWARETHR B:77 , GLY B:79 , SER B:91 , PRP B:348BINDING SITE FOR RESIDUE MG B 346
04AC4SOFTWAREASP B:223 , GLU B:224 , PRP B:348BINDING SITE FOR RESIDUE MG B 347
05AC5SOFTWAREGLY C:79 , SER C:91 , PRP C:348BINDING SITE FOR RESIDUE MG C 346
06AC6SOFTWAREASP C:223 , GLU C:224 , PRP C:348BINDING SITE FOR RESIDUE MG C 347
07AC7SOFTWAREGLY D:79 , SER D:91 , PRP D:348BINDING SITE FOR RESIDUE MG D 346
08AC8SOFTWAREASP D:223 , GLU D:224 , PRP D:348BINDING SITE FOR RESIDUE MG D 347
09AC9SOFTWARETHR A:77 , ALA A:78 , GLY A:79 , GLY A:81 , ASP A:83 , THR A:87 , ASN A:89 , SER A:91 , THR A:92 , LYS A:106 , SER A:118 , ASP A:223 , GLU A:224 , MG A:346 , MG A:347 , HOH A:362BINDING SITE FOR RESIDUE PRP A 348
10BC1SOFTWARETHR B:77 , ALA B:78 , GLY B:79 , GLY B:81 , ASP B:83 , THR B:87 , ASN B:89 , SER B:91 , THR B:92 , LYS B:106 , SER B:118 , ASP B:223 , GLU B:224 , MG B:346 , MG B:347BINDING SITE FOR RESIDUE PRP B 348
11BC2SOFTWARETHR C:77 , ALA C:78 , GLY C:79 , GLY C:81 , ASP C:83 , THR C:87 , ASN C:89 , VAL C:90 , SER C:91 , THR C:92 , LYS C:106 , SER C:118 , ILE C:222 , ASP C:223 , GLU C:224 , MG C:346 , MG C:347 , HOH C:373BINDING SITE FOR RESIDUE PRP C 348
12BC3SOFTWARETHR D:77 , ALA D:78 , GLY D:79 , GLY D:81 , ASP D:83 , THR D:87 , ASN D:89 , VAL D:90 , SER D:91 , THR D:92 , LYS D:106 , SER D:118 , GLY D:191 , ILE D:222 , ASP D:223 , GLU D:224 , MG D:346 , MG D:347BINDING SITE FOR RESIDUE PRP D 348

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZXY)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Glu A:219 -Pro A:220
2Glu B:219 -Pro B:220
3Glu C:219 -Pro C:220

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZXY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZXY)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZXY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:344
 aligned with TRPD_SULSO | P50384 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:344
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340    
           TRPD_SULSO     1 MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKSS 344
               SCOP domains d1zxya1 A:1-70 Anthranilate phosphoribosyltransferase (TrpD)          d1zxya2 A:71-344 Anthranilate phosphoribosyltransferase (TrpD)                                                                                                                                                                                                                     SCOP domains
               CATH domains 1zxyA01 A:1-70,A:150-181                                              -1zxyA02 A:72-149,A:182-343                                                    1zxyA01 A:1-70,A:150-181        1zxyA02 A:72-149,A:182-343 Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2                                                                                 - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh........ee............hhhhhhhhhhh....eeeee........hhhhhhhhh......hhhhhhhhhhhh.eeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.....eeeee..hhhhhhhhhhhhh.....eeeeeee...........eeeeeeee..eeeeeeee.hhhh....hhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zxy A   1 MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKSS 344
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340    

Chain B from PDB  Type:PROTEIN  Length:344
 aligned with TRPD_SULSO | P50384 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:344
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340    
           TRPD_SULSO     1 MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKSS 344
               SCOP domains d1zxyb1 B:1-70 Anthranilate phosphoribosyltransferase (TrpD)          d1zxyb2 B:71-344 Anthranilate phosphoribosyltransferase (TrpD)                                                                                                                                                                                                                     SCOP domains
               CATH domains 1zxyB01 B:1-70,B:150-181                                              -1zxyB02 B:72-149,B:182-343                                                    1zxyB01 B:1-70,B:150-181        1zxyB02 B:72-149,B:182-343 Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2                                                                                 - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh........ee............hhhhhhhhhhh....eeeee........hhhhhhhhh......hhhhhhhhhhhh.eeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeee..hhhhhhhhhhhhh.....eeeeeee...........eeeeeeee...eeeeeee.hhhh....hhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zxy B   1 MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKSS 344
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340    

Chain C from PDB  Type:PROTEIN  Length:344
 aligned with TRPD_SULSO | P50384 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:344
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340    
           TRPD_SULSO     1 MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKSS 344
               SCOP domains d1zxyc1 C:1-70 Anthranilate phosphoribosyltransferase (TrpD)          d1zxyc2 C:71-344 Anthranilate phosphoribosyltransferase (TrpD)                                                                                                                                                                                                                     SCOP domains
               CATH domains 1zxyC01 C:1-70,C:150-181                                              -1zxyC02 C:72-149,C:182-343                                                    1zxyC01 C:1-70,C:150-181        1zxyC02 C:72-149,C:182-343 Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2                                                                                 - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh........ee............hhhhhhhhhhh....eeeee........hhhhhhhhhh.....hhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhh......eeeee...hhhhhhhhhhhh.....eeeeeee...........eeeeeeee..eeeeeeee.hhhh....hhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zxy C   1 MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKSS 344
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340    

Chain D from PDB  Type:PROTEIN  Length:344
 aligned with TRPD_SULSO | P50384 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:344
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340    
           TRPD_SULSO     1 MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKSS 344
               SCOP domains d1zxyd1 D:1-70 Anthranilate phosphoribosyltransferase (TrpD)          d1zxyd2 D:71-344 Anthranilate phosphoribosyltransferase (TrpD)                                                                                                                                                                                                                     SCOP domains
               CATH domains 1zxyD01 D:1-70,D:150-181                                              -1zxyD02 D:72-149,D:182-343                                                    1zxyD01 D:1-70,D:150-181        1zxyD02 D:72-149,D:182-343 Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2                                                                                 - CATH domains
           Pfam domains (1) -Glycos_trans_3N-1zxyD01 D:2-67                                    ---Glycos_transf_3-1zxyD05 D:71-322                                                                                                                                                                                                                            ---------------------- Pfam domains (1)
           Pfam domains (2) -Glycos_trans_3N-1zxyD02 D:2-67                                    ---Glycos_transf_3-1zxyD06 D:71-322                                                                                                                                                                                                                            ---------------------- Pfam domains (2)
           Pfam domains (3) -Glycos_trans_3N-1zxyD03 D:2-67                                    ---Glycos_transf_3-1zxyD07 D:71-322                                                                                                                                                                                                                            ---------------------- Pfam domains (3)
           Pfam domains (4) -Glycos_trans_3N-1zxyD04 D:2-67                                    ---Glycos_transf_3-1zxyD08 D:71-322                                                                                                                                                                                                                            ---------------------- Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh........ee............hhhhhhhhhhh....eeeee........hhhhhhhhhh.....hhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhhh...hhhhhhhhh......eeeee..hhhhhhhhhhhhhh....eeeeeee...........eeeeeeee...eeeeeee.hhhh....hhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zxy D   1 MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKSS 344
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 8)

Asymmetric Unit

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (TRPD_SULSO | P50384)
molecular function
    GO:0004048    anthranilate phosphoribosyltransferase activity    Catalysis of the reaction: N-(5-phospho-beta-D-ribosyl)anthranilate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0009073    aromatic amino acid family biosynthetic process    The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0000162    tryptophan biosynthetic process    The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PRP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:219 - Pro A:220   [ RasMol ]  
    Glu B:219 - Pro B:220   [ RasMol ]  
    Glu C:219 - Pro C:220   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1zxy
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  TRPD_SULSO | P50384
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.4.2.18
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  TRPD_SULSO | P50384
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRPD_SULSO | P503841gxb 1o17 1zyk 2gvq 3gbr

(-) Related Entries Specified in the PDB File

1gxb 1o17 1xfm