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1ZXY
Biol. Unit 1
Info
Asym.Unit (223 KB)
Biol.Unit 1 (111 KB)
Biol.Unit 2 (111 KB)
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(1)
Title
:
ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH PRPP AND MAGNESIUM
Authors
:
M. Marino, M. Deuss, R. Sterner, O. Mayans
Date
:
09 Jun 05 (Deposition) - 23 May 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.56
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Anthranilate Posphoribosyltransferase, Trpd, Prpp
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Marino, M. Deuss, D. I. Svergun, P. V. Konarev, R. Sterner, O. Mayans
Structural And Mutational Analysis Of Substrate Complexation By Anthranilate Phosphoribosyltransferase From Sulfolobus Solfataricus.
J. Biol. Chem. V. 281 21410 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
2a: ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC... (PRPa)
2b: ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC... (PRPb)
2c: ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC... (PRPc)
2d: ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC... (PRPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
PRP
2
Ligand/Ion
ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:77 , GLY A:79 , SER A:91 , PRP A:348
BINDING SITE FOR RESIDUE MG A 346
2
AC2
SOFTWARE
ASP A:223 , GLU A:224 , PRP A:348
BINDING SITE FOR RESIDUE MG A 347
3
AC7
SOFTWARE
GLY D:79 , SER D:91 , PRP D:348
BINDING SITE FOR RESIDUE MG D 346
4
AC8
SOFTWARE
ASP D:223 , GLU D:224 , PRP D:348
BINDING SITE FOR RESIDUE MG D 347
5
AC9
SOFTWARE
THR A:77 , ALA A:78 , GLY A:79 , GLY A:81 , ASP A:83 , THR A:87 , ASN A:89 , SER A:91 , THR A:92 , LYS A:106 , SER A:118 , ASP A:223 , GLU A:224 , MG A:346 , MG A:347 , HOH A:362
BINDING SITE FOR RESIDUE PRP A 348
6
BC3
SOFTWARE
THR D:77 , ALA D:78 , GLY D:79 , GLY D:81 , ASP D:83 , THR D:87 , ASN D:89 , VAL D:90 , SER D:91 , THR D:92 , LYS D:106 , SER D:118 , GLY D:191 , ILE D:222 , ASP D:223 , GLU D:224 , MG D:346 , MG D:347
BINDING SITE FOR RESIDUE PRP D 348
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1zxya1 (A:1-70)
1b: SCOP_d1zxyb1 (B:1-70)
1c: SCOP_d1zxyc1 (C:1-70)
1d: SCOP_d1zxyd1 (D:1-70)
2a: SCOP_d1zxya2 (A:71-344)
2b: SCOP_d1zxyb2 (B:71-344)
2c: SCOP_d1zxyc2 (C:71-344)
2d: SCOP_d1zxyd2 (D:71-344)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Methionine synthase domain-like
(29)
Superfamily
:
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
(22)
Family
:
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
(19)
Protein domain
:
Anthranilate phosphoribosyltransferase (TrpD)
(10)
Sulfolobus solfataricus [TaxId: 2287]
(6)
1a
d1zxya1
A:1-70
1b
d1zxyb1
B:1-70
1c
d1zxyc1
C:1-70
1d
d1zxyd1
D:1-70
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
(22)
Superfamily
:
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
(22)
Family
:
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
(21)
Protein domain
:
Anthranilate phosphoribosyltransferase (TrpD)
(10)
Sulfolobus solfataricus [TaxId: 2287]
(6)
2a
d1zxya2
A:71-344
2b
d1zxyb2
B:71-344
2c
d1zxyc2
C:71-344
2d
d1zxyd2
D:71-344
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1zxyA02 (A:72-149,A:182-343)
1b: CATH_1zxyC02 (C:72-149,C:182-343)
1c: CATH_1zxyD02 (D:72-149,D:182-343)
1d: CATH_1zxyB02 (B:72-149,B:182-343)
2a: CATH_1zxyA01 (A:1-70,A:150-181)
2b: CATH_1zxyC01 (C:1-70,C:150-181)
2c: CATH_1zxyD01 (D:1-70,D:150-181)
2d: CATH_1zxyB01 (B:1-70,B:150-181)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2
(23)
Homologous Superfamily
:
Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2
(23)
Sulfolobus solfataricus. Organism_taxid: 2287.
(3)
1a
1zxyA02
A:72-149,A:182-343
1b
1zxyC02
C:72-149,C:182-343
1c
1zxyD02
D:72-149,D:182-343
1d
1zxyB02
B:72-149,B:182-343
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3
(19)
Homologous Superfamily
:
Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C
(18)
Sulfolobus solfataricus. Organism_taxid: 2287.
(3)
2a
1zxyA01
A:1-70,A:150-181
2b
1zxyC01
C:1-70,C:150-181
2c
1zxyD01
D:1-70,D:150-181
2d
1zxyB01
B:1-70,B:150-181
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Glycos_trans_3N_1zxyD01 (D:2-67)
1b: PFAM_Glycos_trans_3N_1zxyD02 (D:2-67)
1c: PFAM_Glycos_trans_3N_1zxyD03 (D:2-67)
1d: PFAM_Glycos_trans_3N_1zxyD04 (D:2-67)
2a: PFAM_Glycos_transf_3_1zxyD05 (D:71-322)
2b: PFAM_Glycos_transf_3_1zxyD06 (D:71-322)
2c: PFAM_Glycos_transf_3_1zxyD07 (D:71-322)
2d: PFAM_Glycos_transf_3_1zxyD08 (D:71-322)
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Clans
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)
(
)
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)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Glycos_trans_3N]
(10)
Family
:
Glycos_trans_3N
(10)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(3)
1a
Glycos_trans_3N-1zxyD01
D:2-67
1b
Glycos_trans_3N-1zxyD02
D:2-67
1c
Glycos_trans_3N-1zxyD03
D:2-67
1d
Glycos_trans_3N-1zxyD04
D:2-67
Clan
:
no clan defined [family: Glycos_transf_3]
(10)
Family
:
Glycos_transf_3
(10)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(3)
2a
Glycos_transf_3-1zxyD05
D:71-322
2b
Glycos_transf_3-1zxyD06
D:71-322
2c
Glycos_transf_3-1zxyD07
D:71-322
2d
Glycos_transf_3-1zxyD08
D:71-322
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Asymmetric Unit 1
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Asym.Unit (223 KB)
Header - Asym.Unit
Biol.Unit 1 (111 KB)
Header - Biol.Unit 1
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