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(-) Description

Title :  CRYSTAL STRUCTURE OF A CCPA-CRH-DNA COMPLEX
 
Authors :  M. A. Schumacher, R. G. Brennan, W. Hillen, G. Seidel
Date :  02 Jun 05  (Deposition) - 07 Feb 06  (Release) - 22 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.98
Chains :  Asym. Unit :  A,B,G,J,O,P,R,T,W
Biol. Unit 1:  A,O,W  (1x)
Biol. Unit 2:  B,P,T  (1x)
Biol. Unit 3:  G,J,R  (1x)
Keywords :  Ccpa; Crh; Dna; Complex; Laci Member, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, G. Seidel, W. Hillen, R. G. Brennan
Phosphoprotein Crh-Ser46-P Displays Altered Binding To Ccpa To Effect Carbon Catabolite Regulation.
J. Biol. Chem. V. 281 6793 2006
PubMed-ID: 16316990  |  Reference-DOI: 10.1074/JBC.M509977200

(-) Compounds

Molecule 1 - DNA RECOGNITION STRAND CRE
    Chains: O, T, R
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - GLUCOSE-RESISTANCE AMYLASE REGULATOR
    Chains: A, B, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CCPA
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: CCPA;
CATABOLITE CONTROL PROTEIN A
 
Molecule 3 - HPR-LIKE PROTEIN CRH
    Chains: W, P, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CRH
    Mutation: YES
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: CRH;
CATABOLITE REPRESSION HPR

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABGJOPRTW
Biological Unit 1 (1x): A   O   W
Biological Unit 2 (1x):  B   P T 
Biological Unit 3 (1x):   GJ  R  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1IOD11Ligand/IonIODIDE ION
2SEP3Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1IOD5Ligand/IonIODIDE ION
2SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1IOD4Ligand/IonIODIDE ION
2SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1IOD2Ligand/IonIODIDE ION
2SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:103BINDING SITE FOR RESIDUE IOD A 410
2AC2SOFTWAREPRO A:155BINDING SITE FOR RESIDUE IOD A 412
3AC3SOFTWAREDG O:706BINDING SITE FOR RESIDUE IOD O 415
4AC4SOFTWARELEU G:187 , ILE G:216BINDING SITE FOR RESIDUE IOD G 418
5AC5SOFTWARELEU B:187BINDING SITE FOR RESIDUE IOD B 422
6AC6SOFTWAREGLN P:24BINDING SITE FOR RESIDUE IOD P 421

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZVV)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Val A:265 -Pro A:266
2Arg A:284 -Pro A:285
3Val B:265 -Pro B:266
4Arg B:284 -Pro B:285
5Arg G:284 -Pro G:285

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZVV)

(-) PROSITE Motifs  (4, 15)

Asymmetric Unit (4, 15)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PTS_HPR_DOMPS51350 PTS HPR domain profile.CRH_BACSU1-85
 
 		  3J:1-84
P:1-84
W:1-84
2HTH_LACI_2PS50932 LacI-type HTH domain profile.CCPA_BACME3-57
 
 		  3A:3-57
B:3-57
G:3-57
CCPA_BACSU4-58
 
 		  3A:4-57
B:4-57
G:4-57
3HTH_LACI_1PS00356 LacI-type HTH domain signature.CCPA_BACME5-23
 
 		  3A:5-23
B:5-23
G:5-23
CCPA_BACSU6-24
 
 		  3A:5-23
B:5-23
G:5-23
4PTS_HPR_SERPS00589 PTS HPR domain serine phosphorylation site signature.CRH_BACSU39-54
 
 		  3J:39-54
P:39-54
W:39-54
Biological Unit 1 (4, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PTS_HPR_DOMPS51350 PTS HPR domain profile.CRH_BACSU1-85
 
 		  1-
-
W:1-84
2HTH_LACI_2PS50932 LacI-type HTH domain profile.CCPA_BACME3-57
 
 		  1A:3-57
-
-
CCPA_BACSU4-58
 
 		  1A:4-57
-
-
3HTH_LACI_1PS00356 LacI-type HTH domain signature.CCPA_BACME5-23
 
 		  1A:5-23
-
-
CCPA_BACSU6-24
 
 		  1A:5-23
-
-
4PTS_HPR_SERPS00589 PTS HPR domain serine phosphorylation site signature.CRH_BACSU39-54
 
 		  1-
-
W:39-54
Biological Unit 2 (4, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PTS_HPR_DOMPS51350 PTS HPR domain profile.CRH_BACSU1-85
 
 		  1-
P:1-84
-
2HTH_LACI_2PS50932 LacI-type HTH domain profile.CCPA_BACME3-57
 
 		  1-
B:3-57
-
CCPA_BACSU4-58
 
 		  1-
B:4-57
-
3HTH_LACI_1PS00356 LacI-type HTH domain signature.CCPA_BACME5-23
 
 		  1-
B:5-23
-
CCPA_BACSU6-24
 
 		  1-
B:5-23
-
4PTS_HPR_SERPS00589 PTS HPR domain serine phosphorylation site signature.CRH_BACSU39-54
 
 		  1-
P:39-54
-
Biological Unit 3 (4, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PTS_HPR_DOMPS51350 PTS HPR domain profile.CRH_BACSU1-85
 
 		  1J:1-84
-
-
2HTH_LACI_2PS50932 LacI-type HTH domain profile.CCPA_BACME3-57
 
 		  1-
-
G:3-57
CCPA_BACSU4-58
 
 		  1-
-
G:4-57
3HTH_LACI_1PS00356 LacI-type HTH domain signature.CCPA_BACME5-23
 
 		  1-
-
G:5-23
CCPA_BACSU6-24
 
 		  1-
-
G:5-23
4PTS_HPR_SERPS00589 PTS HPR domain serine phosphorylation site signature.CRH_BACSU39-54
 
 		  1J:39-54
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 1ZVV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
 aligned with CCPA_BACME | P46828 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  
           CCPA_BACME     1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVQLPHRIEFRQSTK 332
               SCOP domains d1zvva1 A:1-59                                             d1zvva2 A:60-332 Glucose-resistance amylase regulator CcpA, C-terminal domain                                                                                                                                                                                                     SCOP domains
               CATH domains 1zvvA01 A:1-60 lambda repressor-like DNA-binding domains    1zvvA02 A:61-159,A:293-322  [code=3.40.50.2300, no name defined]                                   1zvvA03 A:160-292,A:323-332  [code=3.40.50.2300, no name defined]                                                                    1zvvA02 A:61-159,A:293-322    1zvvA03    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhh...eeee.....hhhhhhhhh.....eeee..........ee..hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhhhh........eeeeee............eeee.hhhhhhhhhhhhhhhhhh..............ee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --HTH_LACI_2  PDB: A:3-57 UniProt: 3-57                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----HTH_LACI_1         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zvv A   1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIASMYKYNIILSNSDQNQDKQLHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVELPHRIEFRQSTK 332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  


Chain A from PDB  Type:PROTEIN  Length:332
 aligned with CCPA_BACSU | P25144 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331  
           CCPA_BACSU     2 SNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIVELPHRIELRKSTK 333
               SCOP domains d1zvva1 A:1-59                                             d1zvva2 A:60-332 Glucose-resistance amylase regulator CcpA, C-terminal domain                                                                                                                                                                                                     SCOP domains
               CATH domains 1zvvA01 A:1-60 lambda repressor-like DNA-binding domains    1zvvA02 A:61-159,A:293-322  [code=3.40.50.2300, no name defined]                                   1zvvA03 A:160-292,A:323-332  [code=3.40.50.2300, no name defined]                                                                    1zvvA02 A:61-159,A:293-322    1zvvA03    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhh...eeee.....hhhhhhhhh.....eeee..........ee..hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhhhh........eeeeee............eeee.hhhhhhhhhhhhhhhhhh..............ee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --HTH_LACI_2  PDB: A:4-57 UniProt: 4-58                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ----HTH_LACI_1         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zvv A   1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIASMYKYNIILSNSDQNQDKQLHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVELPHRIEFRQSTK 332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  


Chain B from PDB  Type:PROTEIN  Length:332
 aligned with CCPA_BACME | P46828 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  
           CCPA_BACME     1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVQLPHRIEFRQSTK 332
               SCOP domains d1zvvb1 B:1-59                                             d1zvvb2 B:60-332 Glucose-resistance amylase regulator CcpA, C-terminal domain                                                                                                                                                                                                     SCOP domains
               CATH domains 1zvvB01 B:1-60 lambda repressor-like DNA-binding domains    1zvvB02 B:61-159,B:293-322  [code=3.40.50.2300, no name defined]                                   1zvvB03 B:160-292,B:323-332  [code=3.40.50.2300, no name defined]                                                                    1zvvB02 B:61-159,B:293-322    1zvvB03    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhh...eeee..........eee.hhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhh........eee...hhhhhhhhhhhhh.......eeee.hhhhhhhhhhhhhh.........eeee..............eeee.hhhhhhhhhhhhhhhhhh.......eee...eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --HTH_LACI_2  PDB: B:3-57 UniProt: 3-57                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----HTH_LACI_1         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zvv B   1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIASMYKYNIILSNSDQNQDKQLHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVELPHRIEFRQSTK 332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  


Chain B from PDB  Type:PROTEIN  Length:332
 aligned with CCPA_BACSU | P25144 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331  
           CCPA_BACSU     2 SNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIVELPHRIELRKSTK 333
               SCOP domains d1zvvb1 B:1-59                                             d1zvvb2 B:60-332 Glucose-resistance amylase regulator CcpA, C-terminal domain                                                                                                                                                                                                     SCOP domains
               CATH domains 1zvvB01 B:1-60 lambda repressor-like DNA-binding domains    1zvvB02 B:61-159,B:293-322  [code=3.40.50.2300, no name defined]                                   1zvvB03 B:160-292,B:323-332  [code=3.40.50.2300, no name defined]                                                                    1zvvB02 B:61-159,B:293-322    1zvvB03    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhh...eeee..........eee.hhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhh........eee...hhhhhhhhhhhhh.......eeee.hhhhhhhhhhhhhh.........eeee..............eeee.hhhhhhhhhhhhhhhhhh.......eee...eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --HTH_LACI_2  PDB: B:4-57 UniProt: 4-58                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ----HTH_LACI_1         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zvv B   1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIASMYKYNIILSNSDQNQDKQLHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVELPHRIEFRQSTK 332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  


Chain G from PDB  Type:PROTEIN  Length:329
 aligned with CCPA_BACME | P46828 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  
           CCPA_BACME     1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVQLPHRIEFRQSTK 332
               SCOP domains d1zvvg1 G:1-59                                             d1zvvg2 G:60-332 Glucose-resistance amylase regulator CcpA, C-terminal domain                                                                                                                                                                                                     SCOP domains
               CATH domains 1zvvG01 G:1-60 lambda repressor-like DNA-b   inding domains 1zvvG02 G:61-159,G:293-322  [code=3.40.50.2300, no name defined]                                   1zvvG03 G:160-292,G:323-332  [code=3.40.50.2300, no name defined]                                                                    1zvvG02 G:61-159,G:293-322    1zvvG03    CATH domains
           Pfam domains (1) ---LacI-1zvvG01 G:4-49                           --------------------------------------------------------------------------------------------------------Peripla_BP_3-1zvvG04 G:154-331                                                                                                                                                    - Pfam domains (1)
           Pfam domains (2) ---LacI-1zvvG02 G:4-49                           --------------------------------------------------------------------------------------------------------Peripla_BP_3-1zvvG05 G:154-331                                                                                                                                                    - Pfam domains (2)
           Pfam domains (3) ---LacI-1zvvG03 G:4-49                           --------------------------------------------------------------------------------------------------------Peripla_BP_3-1zvvG06 G:154-331                                                                                                                                                    - Pfam domains (3)
         Sec.struct. author ...hhhhhhhhh..hhhhhh.........hhhhhhhhhhhhh---...hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhh...eeee.....hhhhhhhhhh....eeee..........ee..hhhhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhh........ee....hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhh........eeeeee.hhhhh......eeee.hhhhhhhhhhhhhhhhhh.............eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --HTH_LACI_2  PDB: G:3-57 UniProt: 3-57                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----HTH_LACI_1         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zvv G   1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIE---YRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIASMYKYNIILSNSDQNQDKQLHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVELPHRIEFRQSTK 332
                                    10        20        30        40 |   |  50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  
                                                                    42  46                                                                                                                                                                                                                                                                                              


Chain G from PDB  Type:PROTEIN  Length:329
 aligned with CCPA_BACSU | P25144 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331  
           CCPA_BACSU     2 SNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIVELPHRIELRKSTK 333
               SCOP domains d1zvvg1 G:1-59                                             d1zvvg2 G:60-332 Glucose-resistance amylase regulator CcpA, C-terminal domain                                                                                                                                                                                                     SCOP domains
               CATH domains 1zvvG01 G:1-60 lambda repressor-like DNA-b   inding domains 1zvvG02 G:61-159,G:293-322  [code=3.40.50.2300, no name defined]                                   1zvvG03 G:160-292,G:323-332  [code=3.40.50.2300, no name defined]                                                                    1zvvG02 G:61-159,G:293-322    1zvvG03    CATH domains
           Pfam domains (1) ---LacI-1zvvG01 G:4-49                           --------------------------------------------------------------------------------------------------------Peripla_BP_3-1zvvG04 G:154-331                                                                                                                                                    - Pfam domains (1)
           Pfam domains (2) ---LacI-1zvvG02 G:4-49                           --------------------------------------------------------------------------------------------------------Peripla_BP_3-1zvvG05 G:154-331                                                                                                                                                    - Pfam domains (2)
           Pfam domains (3) ---LacI-1zvvG03 G:4-49                           --------------------------------------------------------------------------------------------------------Peripla_BP_3-1zvvG06 G:154-331                                                                                                                                                    - Pfam domains (3)
         Sec.struct. author ...hhhhhhhhh..hhhhhh.........hhhhhhhhhhhhh---...hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhh...eeee.....hhhhhhhhhh....eeee..........ee..hhhhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhh........ee....hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhh........eeeeee.hhhhh......eeee.hhhhhhhhhhhhhhhhhh.............eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --HTH_LACI_2  PDB: G:4-57 UniProt: 4-58                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ----HTH_LACI_1         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zvv G   1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIE---YRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIASMYKYNIILSNSDQNQDKQLHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVELPHRIEFRQSTK 332
                                    10        20        30        40 |   |  50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  
                                                                    42  46                                                                                                                                                                                                                                                                                              


Chain J from PDB  Type:PROTEIN  Length:84
 aligned with CRH_BACSU | O06976 from UniProtKB/Swiss-Prot  Length:85

    Alignment length:84
                                    10        20        30        40        50        60        70        80    
            CRH_BACSU     1 MVQQKVEVRLKTGLQARPAALFVQEANRFTSDVFLEKDGKKVNAKSIMGLMSLAVSTGTEVTLIAQGEDEQEALEKLAAYVQEE  84
               SCOP domains d1zvvj1 J:1-84 Crh, catabolite repression HPr-like protein                           SCOP domains
               CATH domains 1zvvJ00 J:1-84  [code=3.30.1340.10, no name defined]                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee........hhhhhhhhhhhhh....eeeee....eee..hhhhhhhhh......ee..ee..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) PTS_HPR_DOM  PDB: J:1-84 UniProt: 1-85                                               PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) --------------------------------------PTS_HPR_SER     ------------------------------ PROSITE (4)
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 1zvv J   1 MVQQKVEVRLKTGLQARPAALFVQEANRFTSDIFLEKDGKKVNAKsIMGLMSLAISTGTEITLIAQGEDEQEALEKLAAYVQEE  84
                                    10        20        30        40     |  50        60        70        80    
                                                                        46-SEP                                  


Chain O from PDB  Type:DNA  Length:16
                                                
                 1zvv O 700 CTGAAAGCGCTTACAG 715
                                   709      


Chain P from PDB  Type:PROTEIN  Length:84
 aligned with CRH_BACSU | O06976 from UniProtKB/Swiss-Prot  Length:85

    Alignment length:84
                                    10        20        30        40        50        60        70        80    
            CRH_BACSU     1 MVQQKVEVRLKTGLQARPAALFVQEANRFTSDVFLEKDGKKVNAKSIMGLMSLAVSTGTEVTLIAQGEDEQEALEKLAAYVQEE  84
               SCOP domains d1zvvp_ P: Crh, catabolite repression HPr-like protein                               SCOP domains
               CATH domains 1zvvP00 P:1-84  [code=3.30.1340.10, no name defined]                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee........hhhhhhhhhhhhh....eeeeee..eeee..hhhhhhhhh......eeeeee..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) PTS_HPR_DOM  PDB: P:1-84 UniProt: 1-85                                               PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) --------------------------------------PTS_HPR_SER     ------------------------------ PROSITE (4)
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 1zvv P   1 MVQQKVEVRLKTGLQARPAALFVQEANRFTSDIFLEKDGKKVNAKsIMGLMSLAISTGTEITLIAQGEDEQEALEKLAAYVQEE  84
                                    10        20        30        40     |  50        60        70        80    
                                                                        46-SEP                                  


Chain R from PDB  Type:DNA  Length:16
                                                
                 1zvv R 700 CTGAAAGCGCTTACAG 715
                                   709      


Chain T from PDB  Type:DNA  Length:16
                                                
                 1zvv T 700 CTGAAAGCGCTTACAG 715
                                   709      


Chain W from PDB  Type:PROTEIN  Length:84
 aligned with CRH_BACSU | O06976 from UniProtKB/Swiss-Prot  Length:85

    Alignment length:84
                                    10        20        30        40        50        60        70        80    
            CRH_BACSU     1 MVQQKVEVRLKTGLQARPAALFVQEANRFTSDVFLEKDGKKVNAKSIMGLMSLAVSTGTEVTLIAQGEDEQEALEKLAAYVQEE  84
               SCOP domains d1zvvw_ W: Crh, catabolite repression HPr-like protein                               SCOP domains
               CATH domains 1zvvW00 W:1-84  [code=3.30.1340.10, no name defined]                                 CATH domains
           Pfam domains (1) PTS-HPr-1zvvW01 W:1-84                                                               Pfam domains (1)
           Pfam domains (2) PTS-HPr-1zvvW02 W:1-84                                                               Pfam domains (2)
           Pfam domains (3) PTS-HPr-1zvvW03 W:1-84                                                               Pfam domains (3)
         Sec.struct. author .eeeee........hhhhhhhhhhhhh....eeeeee..eeee..hhhhhhhhh......eeeeee..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) PTS_HPR_DOM  PDB: W:1-84 UniProt: 1-85                                               PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) --------------------------------------PTS_HPR_SER     ------------------------------ PROSITE (4)
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 1zvv W   1 MVQQKVEVRLKTGLQARPAALFVQEANRFTSDIFLEKDGKKVNAKsIMGLMSLAISTGTEITLIAQGEDEQEALEKLAAYVQEE  84
                                    10        20        30        40     |  50        60        70        80    
                                                                        46-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 9)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (3, 9)

Asymmetric Unit
(-)
Clan: HTH (544)
(-)
Clan: Periplas_BP (97)
(-)
Clan: no clan defined [family: PTS-HPr] (26)

(-) Gene Ontology  (5, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,G   (CCPA_BACME | P46828)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain A,B,G   (CCPA_BACSU | P25144)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain J,P,W   (CRH_BACSU | O06976)

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  1zvv
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  CCPA_BACSU | P25144
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  CRH_BACSU | O06976
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CCPA_BACME | P46828: 1rzr 1sxg 1sxh 1sxi 2hsg 2jcg 2nzu 2nzv 2oen
        CCPA_BACSU | P25144: 2fep 3oqm 3oqn 3oqo
        CRH_BACSU | O06976: 1k1c 1mo1 1mu4 2ak7 2rlz

(-) Related Entries Specified in the PDB File

1rzr CCPA-HPR-DNA COMPLEX
1sxg APO CCPA CORE STRUCTURE, C2 SPACEGROUP
1sxh P212121 FORM OF APOCCPA
1sxi P21 FORM OF APOCCPA