1RZR | PD0507 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR-PHOSPHOPROTEIN-DNA COMPLEX

Authors :   M. A. Schumacher, G. S. Allen, R. G. Brennan

Date :   27 Dec 03 (Deposition) - 12 Oct 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D,E,G,H,L,R,S,T,Y
Biol. Unit 1: C,G,H,L,R,T  (1x)
Biol. Unit 2: A,B,D,E,S,Y  (1x)

Keywords :   Protein-Dna Complex, Phospho-Protein, Transcription/Transport Protein/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Schumacher, G. S. Allen, M. Diel, G. Seidel, W. Hillen, R. G. Brennan
Structural Basis For Allosteric Control Of The Transcription Regulator Ccpa By The Phosphoprotein Hpr-Ser46-P.
Cell(Cambridge, Mass. ) V. 118 731 2004
PubMed-ID: 15369672 | Reference-DOI: 10.1016/J.CELL.2004.08.027
(for further references see the PDB file header)

*Molecule 1 - 5'- D(CPTPGPAPAPAPGPCPGPCPTPAPAPCPAPG)-3'*
	Chains	:	H, E
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 2 - 5'- D(CPTPGPTPTPAPGPCPGPCPTPTPTPCPAPG)-3'*
	Chains	:	R, B
	Engineered	:	YES
	Synthetic	:	YES

Molecule 3 - GLUCOSE-RESISTANCE AMYLASE REGULATOR
	Chains	:	G, C, A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	TRANSCRIPTIONAL REGULATOR
	Gene	:	CCPA
	Organism Scientific	:	BACILLUS MEGATERIUM
	Organism Taxid	:	1404
	Synonym	:	CATABOLITE CONTROL PROTEIN

Molecule 4 - GLUCOSE-RESISTANCE AMYLASE REGULATOR
	Chains	:	D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	CCPA
	Organism Scientific	:	BACILLUS MEGATERIUM
	Organism Taxid	:	1404
	Synonym	:	CATABOLITE CONTROL PROTEIN

Molecule 5 - PHOSPHOCARRIER PROTEIN HPR
	Chains	:	T, L, Y, S
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	PTSH
	Organism Scientific	:	BACILLUS MEGATERIUM
	Organism Taxid	:	1404
	Synonym	:	HISTIDINE-CONTAINING PROTEIN

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	G	H	L	R	S	T	Y
Biological Unit 1 (1x)	:			C			G	H	L	R		T
Biological Unit 2 (1x)	:	A	B		D	E					S		Y

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 52)

No.	Name	Count	Type	Full Name
1	MG	2	Ligand/Ion	MAGNESIUM ION
2	MSE	39	Mod. Amino Acid	SELENOMETHIONINE
3	SEP	4	Mod. Amino Acid	PHOSPHOSERINE
4	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 27)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	20	Mod. Amino Acid	SELENOMETHIONINE
3	SEP	2	Mod. Amino Acid	PHOSPHOSERINE
4	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 23)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	19	Mod. Amino Acid	SELENOMETHIONINE
3	SEP	2	Mod. Amino Acid	PHOSPHOSERINE
4	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:87 , TYR A:91 , ASN A:92 , ASN D:111	BINDING SITE FOR RESIDUE SO4 A 599
2	AC2	SOFTWARE	HIS A:107 , ASN A:111 , THR D:87	BINDING SITE FOR RESIDUE SO4 A 946
3	AC3	SOFTWARE	ASN C:111 , HOH C:960 , THR G:87 , TYR G:91 , ASN G:92	BINDING SITE FOR RESIDUE SO4 C 947
4	AC4	SOFTWARE	THR C:87 , LYS C:90 , TYR C:91 , ASN C:92 , SER G:96 , HIS G:107 , ASN G:111	BINDING SITE FOR RESIDUE SO4 C 846
5	AC5	SOFTWARE	LYS G:201 , ASP G:213	BINDING SITE FOR RESIDUE SO4 G 646
6	AC6	SOFTWARE	ARG G:212 , ASP G:213 , SER G:214	BINDING SITE FOR RESIDUE SO4 G 647
7	AC7	SOFTWARE	SER C:138 , VAL C:140 , HOH C:955	BINDING SITE FOR RESIDUE SO4 C 346
8	AC8	SOFTWARE	ASN D:101 , ASP D:103 , LYS D:104	BINDING SITE FOR RESIDUE MG D 754
9	AC9	SOFTWARE	ASN A:101 , ASP A:103 , LYS A:104	BINDING SITE FOR RESIDUE MG A 704

(no "SS Bond" information available for 1RZR)

(no "Cis Peptide Bond" information available for 1RZR)

(no "SAP(SNP)/Variant" information available for 1RZR)

Asymmetric Unit (4, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_LACI_2	PS50932	LacI-type HTH domain profile.	CCPA_BACME	3-57	4	A:3-57 C:3-57 D:3-57 G:3-57
2	HTH_LACI_1	PS00356	LacI-type HTH domain signature.	CCPA_BACME	5-23	4	A:5-23 C:5-23 D:5-23 G:5-23
3	PTS_HPR_HIS	PS00369	PTS HPR domain histidine phosphorylation site signature.	PTHP_BACME	13-20	4	L:13-20 S:13-20 T:13-20 Y:13-20
4	PTS_HPR_SER	PS00589	PTS HPR domain serine phosphorylation site signature.	PTHP_BACME	39-54	4	L:39-54 S:39-54 T:39-54 Y:39-54

Biological Unit 1 (4, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_LACI_2	PS50932	LacI-type HTH domain profile.	CCPA_BACME	3-57	2	- C:3-57 - G:3-57
2	HTH_LACI_1	PS00356	LacI-type HTH domain signature.	CCPA_BACME	5-23	2	- C:5-23 - G:5-23
3	PTS_HPR_HIS	PS00369	PTS HPR domain histidine phosphorylation site signature.	PTHP_BACME	13-20	2	L:13-20 - T:13-20 -
4	PTS_HPR_SER	PS00589	PTS HPR domain serine phosphorylation site signature.	PTHP_BACME	39-54	2	L:39-54 - T:39-54 -

Biological Unit 2 (4, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_LACI_2	PS50932	LacI-type HTH domain profile.	CCPA_BACME	3-57	2	A:3-57 - D:3-57 -
2	HTH_LACI_1	PS00356	LacI-type HTH domain signature.	CCPA_BACME	5-23	2	A:5-23 - D:5-23 -
3	PTS_HPR_HIS	PS00369	PTS HPR domain histidine phosphorylation site signature.	PTHP_BACME	13-20	2	- S:13-20 - Y:13-20
4	PTS_HPR_SER	PS00589	PTS HPR domain serine phosphorylation site signature.	PTHP_BACME	39-54	2	- S:39-54 - Y:39-54

(no "Exon" information available for 1RZR)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:332
 aligned with CCPA_BACME | P46828 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  
           CCPA_BACME     1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVQLPHRIEFRQSTK 332
               SCOP domains d1rzra1 A:1-60                                              d1rzra2 A:61-332 Glucose-resistance amylase regulator CcpA, C-terminal domain                                                                                                                                                                                                    SCOP domains
               CATH domains -1rzrA01 A:2-60 lambda repressor-like DNA-binding domains   1rzrA02 A:61-159,A:293-322  [code=3.40.50.2300, no name defined]                                   1rzrA03 A:160-292,A:323-332  [code=3.40.50.2300, no name defined]                                                                    1rzrA02 A:61-159,A:293-322    1rzrA03    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhh....hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhh.....eeee..........eee.hhhhhhhhhhhhhhh.....eeeee....hhhhhh.hhhhhhhhhhhh....hhh.eee...hhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhhh.........eeeeee..hhhhhh....eeee.hhhhhhhhhhhhhhhhhh.......eee...eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --HTH_LACI_2  PDB: A:3-57 UniProt: 3-57                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----HTH_LACI_1         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rzr A   1 mNVTIYDVAREASVSmATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATmYKYNIILSNSDQNQDKELHLLNNmLGKQVDGIIFmSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEmALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTmVRPQLTSVVQPmYDIGAVAmRLLTKYmNKETVDSSIVQLPHRIEFRQSTK 332
                            |       10     |  20        30        40        50        60        70        80       |90       100       110 |     120  |    130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 |     290   |   300 |     310       320       330  
                            |             16-MSE                                                                  88-MSE                 112-MSE    123-MSE                                                                                                                        250-MSE                         282-MSE     294-MSE 302-MSE  |                       
                            1-MSE                                                                                                                                                                                                                                                                                                             309-MSE

Chain B from PDB  Type:DNA  Length:16
                                                
                 1rzr B 700 CTGTTAGCGCTTTCAG 715
                                   709

Chain C from PDB  Type:PROTEIN  Length:332
 aligned with CCPA_BACME | P46828 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  
           CCPA_BACME     1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVQLPHRIEFRQSTK 332
               SCOP domains d1rzrc1 C:1-60                                              d1rzrc2 C:61-332 Glucose-resistance amylase regulator CcpA, C-terminal domain                                                                                                                                                                                                    SCOP domains
               CATH domains -1rzrC01 C:2-60 lambda repressor-like DNA-binding domains   1rzrC02 C:61-159,C:293-322  [code=3.40.50.2300, no name defined]                                   1rzrC03 C:160-292,C:323-332  [code=3.40.50.2300, no name defined]                                                                    1rzrC02 C:61-159,C:293-322    1rzrC03    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.....hhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhh....eee.....hhhhhhhhh.....eeee..........eee...hhhhhhhhhhhhh.......eee..........hhhhhhhhhhhh.....hhh.eee....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh..........eee.hhhhh.......eee.hhhhhhhhhhhhhhhhh........eee...eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --HTH_LACI_2  PDB: C:3-57 UniProt: 3-57                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----HTH_LACI_1         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rzr C   1 mNVTIYDVAREASVSmATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATmYKYNIILSNSDQNQDKELHLLNNmLGKQVDGIIFmSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEmALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTmVRPQLTSVVQPmYDIGAVAmRLLTKYmNKETVDSSIVQLPHRIEFRQSTK 332
                            |       10     |  20        30        40        50        60        70        80       |90       100       110 |     120  |    130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 |     290   |   300 |     310       320       330  
                            1-MSE         16-MSE                                                                  88-MSE                 112-MSE    123-MSE                                                                                                                        250-MSE                         282-MSE     294-MSE 302-MSE  |                       
                                                                                                                                                                                                                                                                                                                                              309-MSE

Chain D from PDB  Type:PROTEIN  Length:332
 aligned with CCPA_BACME | P46828 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  
           CCPA_BACME     1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVQLPHRIEFRQSTK 332
               SCOP domains d1rzrd1 D:1-60                                              d1rzrd2 D:61-332 Glucose-resistance amylase regulator CcpA, C-terminal domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1rzrD01 D:1-60 lambda repressor-like DNA-binding domains    1rzrD02 D:61-159,D:293-322  [code=3.40.50.2300, no name defined]                                   1rzrD03 D:160-292,D:323-332  [code=3.40.50.2300, no name defined]                                                                    1rzrD02 D:61-159,D:293-322    1rzrD03    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhh...hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhh....eee.....hhhhhhhhh.....eee...........eee.hhhhhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhhhhhhh.......eee....hhhhhhhhhhhhh.......ee..hhhhhhhhhhhhhh..........eeeee............eeee.hhhhhhhhhhhhhhhhhh.......eee...eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --HTH_LACI_2  PDB: D:3-57 UniProt: 3-57                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----HTH_LACI_1         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rzr D   1 MNVTIYDVAREASVSmATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATmYKYNIILSNSDQNQDKELHLLNNmLGKQVDGIIFmSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEmALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTmVRPQLTSVVQPmYDIGAVAmRLLTKYmNKETVDSSIVQLPHRIEFRQSTK 332
                                    10     |  20        30        40        50        60        70        80       |90       100       110 |     120  |    130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 |     290   |   300 |     310       320       330  
                                          16-MSE                                                                  88-MSE                 112-MSE    123-MSE                                                                                                                        250-MSE                         282-MSE     294-MSE 302-MSE  |                       
                                                                                                                                                                                                                                                                                                                                              309-MSE

Chain E from PDB  Type:DNA  Length:16
                                                
                 1rzr E 700 CTGAAAGCGCTAACAG 715
                                   709

Chain G from PDB  Type:PROTEIN  Length:332
 aligned with CCPA_BACME | P46828 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  
           CCPA_BACME     1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVQLPHRIEFRQSTK 332
               SCOP domains d1rzrg1 G:1-60                                              d1rzrg2 G:61-332 Glucose-resistance amylase regulator CcpA, C-terminal domain                                                                                                                                                                                                    SCOP domains
               CATH domains -1rzrG01 G:2-60 lambda repressor-like DNA-binding domains   1rzrG02 G:61-159,G:293-322  [code=3.40.50.2300, no name defined]                                   1rzrG03 G:160-292,G:323-332  [code=3.40.50.2300, no name defined]                                                                    1rzrG02 G:61-159,G:293-322    1rzrG03    CATH domains
           Pfam domains (1) ---LacI-1rzrG01 G:4-49                           -----------------------------------------------------------------------------------------------------------------------Peripla_BP_3-1rzrG05 G:169-331                                                                                                                                     - Pfam domains (1)
           Pfam domains (2) ---LacI-1rzrG02 G:4-49                           -----------------------------------------------------------------------------------------------------------------------Peripla_BP_3-1rzrG06 G:169-331                                                                                                                                     - Pfam domains (2)
           Pfam domains (3) ---LacI-1rzrG03 G:4-49                           -----------------------------------------------------------------------------------------------------------------------Peripla_BP_3-1rzrG07 G:169-331                                                                                                                                     - Pfam domains (3)
           Pfam domains (4) ---LacI-1rzrG04 G:4-49                           -----------------------------------------------------------------------------------------------------------------------Peripla_BP_3-1rzrG08 G:169-331                                                                                                                                     - Pfam domains (4)
         Sec.struct. author ...hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhh..eee.ee...hhhhhhhhhhhhhhh....eee.....hhhhhhhhhh.....ee...........eee.hhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhh....hhh.eee...hhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhhhhh.......eeeeee..hhhhhh....eeee.hhhhhhhhhhhhhhhhhh.......eee............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --HTH_LACI_2  PDB: G:3-57 UniProt: 3-57                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----HTH_LACI_1         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rzr G   1 mNVTIYDVAREASVSmATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATmYKYNIILSNSDQNQDKELHLLNNmLGKQVDGIIFmSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEmALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTmVRPQLTSVVQPmYDIGAVAmRLLTKYmNKETVDSSIVQLPHRIEFRQSTK 332
                            |       10     |  20        30        40        50        60        70        80       |90       100       110 |     120  |    130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 |     290   |   300 |     310       320       330  
                            1-MSE         16-MSE                                                                  88-MSE                 112-MSE    123-MSE                                                                                                                        250-MSE                         282-MSE     294-MSE 302-MSE  |                       
                                                                                                                                                                                                                                                                                                                                              309-MSE

Chain H from PDB  Type:DNA  Length:16
                                                
                 1rzr H 700 CTGAAAGCGCTAACAG 715
                                   709

Chain L from PDB  Type:PROTEIN  Length:87
 aligned with PTHP_BACME | O69250 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           PTHP_BACME     2 AQKTFTVTADSGIHARPATTLVQAASKFDSDINLEFNGKTVNLKSIMGVMSLGIQKGATITISAEGSDEADALAALEDTMSKEGLGE  88
               SCOP domains d1rzrl_ L: Histidine-containing phosphocarrier protein (HPr)                            SCOP domains
               CATH domains 1rzrL00 L:2-88  [code=3.30.1340.10, no name defined]                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhh.....eeeeee..eeee..hhhhhh........eeeeeee..hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------PTS_HPR_SER     ---------------------------------- PROSITE (2)
                PROSITE (3) -----------PTS_HPR_-------------------------------------------------------------------- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 1rzr L   2 AQKTFTVTADSGIHARPATTLVQAASKFDSDINLEFNGKTVNLKsIMGVMSLGIQKGATITISAEGSDEADALAALEDTMSKEGLGE  88
                                    11        21        31        41    |   51        61        71        81       
                                                                       46-SEP

Chain R from PDB  Type:DNA  Length:16
                                                
                 1rzr R 700 CTGTTAGCGCTTTCAG 715
                                   709

Chain S from PDB  Type:PROTEIN  Length:87
 aligned with PTHP_BACME | O69250 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           PTHP_BACME     2 AQKTFTVTADSGIHARPATTLVQAASKFDSDINLEFNGKTVNLKSIMGVMSLGIQKGATITISAEGSDEADALAALEDTMSKEGLGE  88
               SCOP domains d1rzrs_ S: Histidine-containing phosphocarrier protein (HPr)                            SCOP domains
               CATH domains 1rzrS00 S:2-88  [code=3.30.1340.10, no name defined]                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhhhhh.....eeeeee..eeee..hhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhh..ee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------PTS_HPR_SER     ---------------------------------- PROSITE (2)
                PROSITE (3) -----------PTS_HPR_-------------------------------------------------------------------- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 1rzr S   2 AQKTFTVTADSGIHARPATTLVQAASKFDSDINLEFNGKTVNLKsIMGVMSLGIQKGATITISAEGSDEADALAALEDTMSKEGLGE  88
                                    11        21        31        41    |   51        61        71        81       
                                                                       46-SEP

Chain T from PDB  Type:PROTEIN  Length:87
 aligned with PTHP_BACME | O69250 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           PTHP_BACME     2 AQKTFTVTADSGIHARPATTLVQAASKFDSDINLEFNGKTVNLKSIMGVMSLGIQKGATITISAEGSDEADALAALEDTMSKEGLGE  88
               SCOP domains d1rzrt_ T: Histidine-containing phosphocarrier protein (HPr)                            SCOP domains
               CATH domains 1rzrT00 T:2-88  [code=3.30.1340.10, no name defined]                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhhhh.....eeeeee..eeee..hhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhh..ee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------PTS_HPR_SER     ---------------------------------- PROSITE (2)
                PROSITE (3) -----------PTS_HPR_-------------------------------------------------------------------- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 1rzr T   2 AQKTFTVTADSGIHARPATTLVQAASKFDSDINLEFNGKTVNLKsIMGVMSLGIQKGATITISAEGSDEADALAALEDTMSKEGLGE  88
                                    11        21        31        41    |   51        61        71        81       
                                                                       46-SEP

Chain Y from PDB  Type:PROTEIN  Length:87
 aligned with PTHP_BACME | O69250 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           PTHP_BACME     2 AQKTFTVTADSGIHARPATTLVQAASKFDSDINLEFNGKTVNLKSIMGVMSLGIQKGATITISAEGSDEADALAALEDTMSKEGLGE  88
               SCOP domains d1rzry_ Y: Histidine-containing phosphocarrier protein (HPr)                            SCOP domains
               CATH domains 1rzrY00 Y:2-88  [code=3.30.1340.10, no name defined]                                    CATH domains
           Pfam domains (1) PTS-HPr-1rzrY01 Y:2-84                                                             ---- Pfam domains (1)
           Pfam domains (2) PTS-HPr-1rzrY02 Y:2-84                                                             ---- Pfam domains (2)
           Pfam domains (3) PTS-HPr-1rzrY03 Y:2-84                                                             ---- Pfam domains (3)
           Pfam domains (4) PTS-HPr-1rzrY04 Y:2-84                                                             ---- Pfam domains (4)
         Sec.struct. author .............hhhhhhhhhhhhhh...eeeeee..eeee..hhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------PTS_HPR_SER     ---------------------------------- PROSITE (2)
                PROSITE (3) -----------PTS_HPR_-------------------------------------------------------------------- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 1rzr Y   2 AQKTFTVTADSGIHARPATTLVQAASKFDSDINLEFNGKTVNLKsIMGVMSLGIQKGATITISAEGSDEADALAALEDTMSKEGLGE  88
                                    11        21        31        41    |   51        61        71        81       
                                                                       46-SEP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Histidine-containing Protein; Chain: A; (38)

Homologous Superfamily: [code=3.30.1340.10, no name defined] (37)

[unclassified] (2)

1a	1rzrL00	L:2-88
1b	1rzrS00	S:2-88
1c	1rzrT00	T:2-88
1d	1rzrY00	Y:2-88

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.2300, no name defined] (308)

[unclassified] (27)

2a	1rzrA03	A:160-292,A:323-332
2b	1rzrC03	C:160-292,C:323-332
2c	1rzrD03	D:160-292,D:323-332
2d	1rzrG03	G:160-292,G:323-332
2e	1rzrA02	A:61-159,A:293-322
2f	1rzrC02	C:61-159,C:293-322
2g	1rzrD02	D:61-159,D:293-322
2h	1rzrG02	G:61-159,G:293-322

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: 434 Repressor (Amino-terminal Domain) (116)

Homologous Superfamily: lambda repressor-like DNA-binding domains (100)

[unclassified] (45)

3a	1rzrD01	D:1-60
3b	1rzrA01	A:2-60
3c	1rzrC01	C:2-60
3d	1rzrG01	G:2-60

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HTH (544)

Family: LacI (35)

Bacillus megaterium (2)

1a	LacI-1rzrG01	G:4-49
1b	LacI-1rzrG02	G:4-49
1c	LacI-1rzrG03	G:4-49
1d	LacI-1rzrG04	G:4-49

Clan: Periplas_BP (97)

Family: Peripla_BP_3 (41)

Bacillus megaterium (7)

2a	Peripla_BP_3-1rzrG05	G:169-331
2b	Peripla_BP_3-1rzrG06	G:169-331
2c	Peripla_BP_3-1rzrG07	G:169-331
2d	Peripla_BP_3-1rzrG08	G:169-331

Clan: no clan defined [family: PTS-HPr] (26)

Family: PTS-HPr (26)

Bacillus megaterium (3)

3a	PTS-HPr-1rzrY01	Y:2-84
3b	PTS-HPr-1rzrY02	Y:2-84
3c	PTS-HPr-1rzrY03	Y:2-84
3d	PTS-HPr-1rzrY04	Y:2-84

Asymmetric Unit(hide GO term definitions)

Chain A,C,D,G (CCPA_BACME | P46828)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.

Chain L,S,T,Y (PTHP_BACME | O69250)

molecular function
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0008643	carbohydrate transport	The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
	GO:0009401	phosphoenolpyruvate-dependent sugar phosphotransferase system	The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	Cis Peptide Bonds
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	1rzr
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	CCPA_BACME \| P46828	:	1sxg 1sxh 1sxi 1zvv 2hsg 2jcg 2nzu 2nzv 2oen
	PTHP_BACME \| O69250	:	2nzu 2nzv 2oen

(no "Related Entries Specified in the PDB File" available for 1RZR)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 52)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (4, 16)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (3, 12)

CATH Domains (3, 16)

Pfam Domains (3, 12)

Gene Ontology (13, 15)

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