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(-) Description

Title :  NMR STRUCTURE OF MCOL1-[13-33] FROM HYDRA
 
Authors :  A. G. Milbradt, C. Boulegue, L. Moroder, C. Renner
Date :  18 May 05  (Deposition) - 15 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Cysteine-Rich Peptide, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. G. Milbradt, C. Boulegue, L. Moroder, C. Renner
The Two Cysteine-Rich Head Domains Of Minicollagen From Hydra Nematocysts Differ In Their Cystine Framework And Overall Fold Despite An Identical Cysteine Sequence Pattern.
J. Mol. Biol. V. 354 591 2005
PubMed-ID: 16257007  |  Reference-DOI: 10.1016/J.JMB.2005.09.080
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MINI-COLLAGEN
    Chains: A
    Engineered: YES
    Other Details: THIS SEQUENCE OCCURS NATURALLY IN HYDRA SP.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC2SOFTWAREPRO A:33BINDING SITE FOR RESIDUE NH2 A 34

(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:14 -A:26
2A:18 -A:31
3A:22 -A:30

(-) Cis Peptide Bonds  (2, 11)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10Ala A:23 -Pro A:24
26Cys A:31 -Tyr A:32

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZPX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZPX)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZPX)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:23
 aligned with Q00484_9CNID | Q00484 from UniProtKB/TrEMBL  Length:149

    Alignment length:23
                                    40        50   
          Q00484_9CNID   31 NPCGSYCPSVCAPACAPVCCYPP 53
               SCOP domains ----------------------- SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author ...............hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                  1zpx A 12 xPCGSYCPSVCAPACAPVCCYPx 34
                            |       21        31  |
                            |                    34-NH2
                           12-ACE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1ZPX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZPX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZPX)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (Q00484_9CNID | Q00484)
cellular component
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.

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  1zpx
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q00484_9CNID | Q00484: 1sop 1sp7

(-) Related Entries Specified in the PDB File

1sop C-TERMINAL CYSTEINE-RICH DOMAIN
1sp7 C-TERMINAL CYSTEINE-RICH DOMAIN