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(-) Description

Title :  STRUCTURE OF THE CYS-RICH C-TERMINAL DOMAIN OF HYDRA MINICOLLAGEN
 
Authors :  S. Meier, D. Haussinger, E. Pokidysheva, H. P. Bachinger, S. Grzesiek
Date :  16 Mar 04  (Deposition) - 18 May 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Cysteine-Rich, Proline-Rich, Disulfide Bond, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Meier, D. Haussinger, E. Pokidysheva, H. P. Bachinger, S. Grzesiek
Determination Of A High-Precision Nmr Structure Of The Minicollagen Cysteine Rich Domain From Hydra And Characterization Of Its Disulfide Bond Formation.
Febs Lett. V. 569 112 2004
PubMed-ID: 15225618  |  Reference-DOI: 10.1016/J.FEBSLET.2004.05.034
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MINI-COLLAGEN
    Chains: A
    Engineered: YES
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OCCURS NATURALLY IN HYDRA SP.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1SP7)

(-) Sites  (0, 0)

(no "Site" information available for 1SP7)

(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:2 -A:18
2A:6 -A:14
3A:10 -A:19

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SP7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SP7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SP7)

(-) Exons   (0, 0)

(no "Exon" information available for 1SP7)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:24
 aligned with Q00484_9CNID | Q00484 from UniProtKB/TrEMBL  Length:149

    Alignment length:24
                                   135       145    
         Q00484_9CNID   126 PCPPVCVAQCVPTCPQYCCPAKRK 149
               SCOP domains d1sp7a_ A:               SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains Coll-------------------- Pfam domains
         Sec.struct. author ..hhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                 1sp7 A   1 PCPPVCVAQCVPTCPQYCCPAKRK  24
                                    10        20
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1SP7)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: Collagen] (7)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (Q00484_9CNID | Q00484)
cellular component
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.

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  1sp7
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  Q00484_9CNID | Q00484
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q00484_9CNID | Q00484: 1sop 1zpx

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1SP7)