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(-) Description

Title :  C-TERMINAL CYSTINE-RICH DOMAIN OF MINICOLLAGEN-I FROM HYDRA
 
Authors :  A. G. Milbradt, L. Moroder, C. Renner
Date :  15 Mar 04  (Deposition) - 27 Apr 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Collagen Oxidative Refolding, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Pokidysheva, A. G. Milbradt, S. Meier, C. Renner, D. Haussinger, H. P. Bachinger, L. Moroder, S. Grzesiek, T. W. Holstein, S. Ozbek, J. Engel
The Structure Of The Cys-Rich Terminal Domain Of Hydra Minicollagen, Which Is Involved In Disulfide Networks Of The Nematocyst Wall.
J. Biol. Chem. V. 279 30395 2004
PubMed-ID: 15123641  |  Reference-DOI: 10.1074/JBC.M403734200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MINI-COLLAGEN
    Chains: A
    Engineered: YES
    Fragment: C-TERMINAL CYSTINE-RICH DOMAIN
    Other Details: FMOC SOLID PHASE SYNTHESIS + OXIDATION. THE SEQUENCE IS NATURALLY FOUND IN HYDRA SP.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (0, 0)

(no "Site" information available for 1SOP)

(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:2 -A:18
2A:6 -A:14
3A:10 -A:19

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SOP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SOP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SOP)

(-) Exons   (0, 0)

(no "Exon" information available for 1SOP)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:26
 aligned with Q00484_9CNID | Q00484 from UniProtKB/TrEMBL  Length:149

    Alignment length:26
                                                  149     
                                   134       144    | 
         Q00484_9CNID   125 PPCPPVCVAQCVPTCPQYCCPAKRK-   -
               SCOP domains d1sopa_ A:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -Coll--------------------- Pfam domains
         Sec.struct. author .......................... Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1sop A   0 xPCPPVCVAQCVPTCPQYCCPAKRKx  25
                            |        9        19     |
                            |                       25-NH2
                            0-ACE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1SOP)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: Collagen] (7)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (Q00484_9CNID | Q00484)
cellular component
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q00484_9CNID | Q00484: 1sp7 1zpx

(-) Related Entries Specified in the PDB File

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