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(-) Description

Title :  CRYSTAL STRUCTURE OF ALKYL HYDROPEROXIDE-REDUCTASE (AHPC) FROM HELICOBACTER PYLORI
 
Authors :  E. Papinutto, H. J. Windle, L. Cendron, R. Battistutta, D. Kelleher, G. Zanotti
Date :  13 May 05  (Deposition) - 29 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Decamer, Toroide-Shaped Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Papinutto, H. J. Windle, L. Cendron, R. Battistutta, D. Kelleher, G. Zanotti
Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori.
Biochim. Biophys. Acta V. 1753 240 2005
PubMed-ID: 16213196  |  Reference-DOI: 10.1016/J.BBAPAP.2005.09.001
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALKYL HYDROPEROXIDE-REDUCTASE
    Chains: A, B, C, D, E, F, G, H, I, J
    EC Number: 1.11.1.15
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAD-THIO-TOPO
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TSAA
    Mutation: YES
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 210
    Synonym: THIOREDOXIN REDUCTASE, 26 KDA ANTIGEN, AHPC

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ZOF)

(-) Sites  (0, 0)

(no "Site" information available for 1ZOF)

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:49 -B:169
2A:169 -B:49
3C:49 -D:169
4E:49 -F:169
5G:49 -H:169
6I:49 -J:169

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZOF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZOF)

(-) PROSITE Motifs  (1, 10)

Asymmetric/Biological Unit (1, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.TSAA_HELPJ1-161
 
 
 
 
 
 
 
 
 		  10A:1-161
B:1-161
C:1-161
D:1-161
E:1-161
F:1-161
G:1-161
H:1-161
I:1-161
J:1-161

(-) Exons   (0, 0)

(no "Exon" information available for 1ZOF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:170
 aligned with TSAA_HELPJ | P56876 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
           TSAA_HELPJ     1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
               SCOP domains d1zofa1 A:1-170 Thioredoxin reductase TsaA                                                                                                                                 SCOP domains
               CATH domains 1zofA00 A:1-170 Glutaredoxin                                                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.....eeeeee........eeeeee..........hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhh.hhhhh........eee...hhhhhhh..ee...ee.eeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE THIOREDOXIN_2  PDB: A:1-161 UniProt: 1-161                                                                                                                       --------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zof A   1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170


Chain B from PDB  Type:PROTEIN  Length:175
 aligned with TSAA_HELPJ | P56876 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     
           TSAA_HELPJ     1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRK 175
               SCOP domains d1zofb_ B: automated matches                                                                                                                                                    SCOP domains
               CATH domains 1zofB00 B:1-175 Glutaredoxin                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.....eeeeee.hhhh...eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhh........eee...hhhhhhh..ee...ee.eeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE THIOREDOXIN_2  PDB: B:1-161 UniProt: 1-161                                                                                                                       -------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zof B   1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRK 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain C from PDB  Type:PROTEIN  Length:170
 aligned with TSAA_HELPJ | P56876 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
           TSAA_HELPJ     1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
               SCOP domains d1zofc_ C: automated matches                                                                                                                                               SCOP domains
               CATH domains 1zofC00 C:1-170 Glutaredoxin                                                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.....eeeeee........eeeeee..........hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhh.hhhhh........eee...hhhhhhh..ee...ee.eeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE THIOREDOXIN_2  PDB: C:1-161 UniProt: 1-161                                                                                                                       --------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zof C   1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170


Chain D from PDB  Type:PROTEIN  Length:175
 aligned with TSAA_HELPJ | P56876 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     
           TSAA_HELPJ     1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRK 175
               SCOP domains d1zofd_ D: automated matches                                                                                                                                                    SCOP domains
               CATH domains 1zofD00 D:1-175 Glutaredoxin                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.....eeeeee.hhhh...eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhh........eee...hhhhhhh..ee...ee.eeeeeee....eeeeeee.....hhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE THIOREDOXIN_2  PDB: D:1-161 UniProt: 1-161                                                                                                                       -------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zof D   1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRK 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain E from PDB  Type:PROTEIN  Length:170
 aligned with TSAA_HELPJ | P56876 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
           TSAA_HELPJ     1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
               SCOP domains d1zofe_ E: automated matches                                                                                                                                               SCOP domains
               CATH domains 1zofE00 E:1-170 Glutaredoxin                                                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.....eeeeee........eeeeee..........hhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhh.hhhhh........eee...hhhhhhh..ee...ee.eeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE THIOREDOXIN_2  PDB: E:1-161 UniProt: 1-161                                                                                                                       --------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zof E   1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170


Chain F from PDB  Type:PROTEIN  Length:175
 aligned with TSAA_HELPJ | P56876 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     
           TSAA_HELPJ     1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRK 175
               SCOP domains d1zoff_ F: automated matches                                                                                                                                                    SCOP domains
               CATH domains 1zofF00 F:1-175 Glutaredoxin                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.....eeeeee.hhhh...eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhh........eee...hhhhhhh..ee...ee.eeeeeee....eeeeeee.....hhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE THIOREDOXIN_2  PDB: F:1-161 UniProt: 1-161                                                                                                                       -------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zof F   1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRK 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain G from PDB  Type:PROTEIN  Length:170
 aligned with TSAA_HELPJ | P56876 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
           TSAA_HELPJ     1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
               SCOP domains d1zofg_ G: automated matches                                                                                                                                               SCOP domains
               CATH domains 1zofG00 G:1-170 Glutaredoxin                                                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.....eeeeee........eeeeee..........hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhh.hhhhh........eee...hhhhhhh..ee...ee.eeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE THIOREDOXIN_2  PDB: G:1-161 UniProt: 1-161                                                                                                                       --------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zof G   1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170


Chain H from PDB  Type:PROTEIN  Length:175
 aligned with TSAA_HELPJ | P56876 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     
           TSAA_HELPJ     1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRK 175
               SCOP domains d1zofh_ H: automated matches                                                                                                                                                    SCOP domains
               CATH domains 1zofH00 H:1-175 Glutaredoxin                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.....eeeeee.hhhh...eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhh........eee...hhhhhhh..ee...ee.eeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE THIOREDOXIN_2  PDB: H:1-161 UniProt: 1-161                                                                                                                       -------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zof H   1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRK 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain I from PDB  Type:PROTEIN  Length:170
 aligned with TSAA_HELPJ | P56876 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
           TSAA_HELPJ     1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
               SCOP domains d1zofi_ I: automated matches                                                                                                                                               SCOP domains
               CATH domains 1zofI00 I:1-170 Glutaredoxin                                                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.....eeeeee........eeeeee..........hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhh.hhhhh........eee...hhhhhhh..ee...ee.eeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE THIOREDOXIN_2  PDB: I:1-161 UniProt: 1-161                                                                                                                       --------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zof I   1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170


Chain J from PDB  Type:PROTEIN  Length:175
 aligned with TSAA_HELPJ | P56876 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     
           TSAA_HELPJ     1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRK 175
               SCOP domains d1zofj_ J: automated matches                                                                                                                                                    SCOP domains
               CATH domains 1zofJ00 J:1-175 Glutaredoxin                                                                                                                                                    CATH domains
           Pfam domains (1) --AhpC-TSA-1zofJ01 J:3-138                                                                                                                -------------------1-cysPrx_C-1zofJ11 Pfam domains (1)
           Pfam domains (2) --AhpC-TSA-1zofJ02 J:3-138                                                                                                                -------------------1-cysPrx_C-1zofJ12 Pfam domains (2)
           Pfam domains (3) --AhpC-TSA-1zofJ03 J:3-138                                                                                                                -------------------1-cysPrx_C-1zofJ13 Pfam domains (3)
           Pfam domains (4) --AhpC-TSA-1zofJ04 J:3-138                                                                                                                -------------------1-cysPrx_C-1zofJ14 Pfam domains (4)
           Pfam domains (5) --AhpC-TSA-1zofJ05 J:3-138                                                                                                                -------------------1-cysPrx_C-1zofJ15 Pfam domains (5)
           Pfam domains (6) --AhpC-TSA-1zofJ06 J:3-138                                                                                                                -------------------1-cysPrx_C-1zofJ16 Pfam domains (6)
           Pfam domains (7) --AhpC-TSA-1zofJ07 J:3-138                                                                                                                -------------------1-cysPrx_C-1zofJ17 Pfam domains (7)
           Pfam domains (8) --AhpC-TSA-1zofJ08 J:3-138                                                                                                                -------------------1-cysPrx_C-1zofJ18 Pfam domains (8)
           Pfam domains (9) --AhpC-TSA-1zofJ09 J:3-138                                                                                                                -------------------1-cysPrx_C-1zofJ19 Pfam domains (9)
          Pfam domains (10) --AhpC-TSA-1zofJ10 J:3-138                                                                                                                -------------------1-cysPrx_C-1zofJ20 Pfam domains (10)
         Sec.struct. author ..........eeeee.....eeeeee.hhhh...eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhh........eee...hhhhhhh..ee...ee.eeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE THIOREDOXIN_2  PDB: J:1-161 UniProt: 1-161                                                                                                                       -------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zof J   1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRK 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 10)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 10)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Glutaredoxin (620)
(-)
Homologous Superfamily: Glutaredoxin (617)
(-)
Helicobacter pylori. Organism_taxid: 210. (1)
1a1zofA00A:1-170
1b1zofC00C:1-170
1c1zofE00E:1-170
1d1zofG00G:1-170
1e1zofI00I:1-170
1f1zofB00B:1-175
1g1zofD00D:1-175
1h1zofF00F:1-175
1i1zofH00H:1-175
1j1zofJ00J:1-175

(-) Pfam Domains  (2, 20)

Asymmetric/Biological Unit
(-)
Clan: Thioredoxin (367)
(-)
Clan: no clan defined [family: 1-cysPrx_C] (19)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (TSAA_HELPJ | P56876)
molecular function
    GO:0016209    antioxidant activity    Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004601    peroxidase activity    Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
    GO:0051920    peroxiredoxin activity    Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH.
biological process
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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