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1ZOF
Asym. Unit
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Asym.Unit (286 KB)
Biol.Unit 1 (279 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALKYL HYDROPEROXIDE-REDUCTASE (AHPC) FROM HELICOBACTER PYLORI
Authors
:
E. Papinutto, H. J. Windle, L. Cendron, R. Battistutta, D. Kelleher, G. Zanotti
Date
:
13 May 05 (Deposition) - 29 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Decamer, Toroide-Shaped Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Papinutto, H. J. Windle, L. Cendron, R. Battistutta, D. Kelleher, G. Zanotti
Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori.
Biochim. Biophys. Acta V. 1753 240 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 10)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:1-161,B:1-161,C:1-161,D:1-161,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
TSAA_HELPJ
1-161
10
A:1-161
B:1-161
C:1-161
D:1-161
E:1-161
F:1-161
G:1-161
H:1-161
I:1-161
J:1-161
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 10)
Info
All SCOP Domains
1a: SCOP_d1zofb_ (B:)
1b: SCOP_d1zofc_ (C:)
1c: SCOP_d1zofd_ (D:)
1d: SCOP_d1zofe_ (E:)
1e: SCOP_d1zoff_ (F:)
1f: SCOP_d1zofg_ (G:)
1g: SCOP_d1zofh_ (H:)
1h: SCOP_d1zofi_ (I:)
1i: SCOP_d1zofj_ (J:)
2a: SCOP_d1zofa1 (A:1-170)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Helicobacter pylori [TaxId: 210]
(1)
1a
d1zofb_
B:
1b
d1zofc_
C:
1c
d1zofd_
D:
1d
d1zofe_
E:
1e
d1zoff_
F:
1f
d1zofg_
G:
1g
d1zofh_
H:
1h
d1zofi_
I:
1i
d1zofj_
J:
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
Thioredoxin reductase TsaA
(1)
Helicobacter pylori [TaxId: 210]
(1)
2a
d1zofa1
A:1-170
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1zofA00 (A:1-170)
1b: CATH_1zofC00 (C:1-170)
1c: CATH_1zofE00 (E:1-170)
1d: CATH_1zofG00 (G:1-170)
1e: CATH_1zofI00 (I:1-170)
1f: CATH_1zofB00 (B:1-175)
1g: CATH_1zofD00 (D:1-175)
1h: CATH_1zofF00 (F:1-175)
1i: CATH_1zofH00 (H:1-175)
1j: CATH_1zofJ00 (J:1-175)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Helicobacter pylori. Organism_taxid: 210.
(1)
1a
1zofA00
A:1-170
1b
1zofC00
C:1-170
1c
1zofE00
E:1-170
1d
1zofG00
G:1-170
1e
1zofI00
I:1-170
1f
1zofB00
B:1-175
1g
1zofD00
D:1-175
1h
1zofF00
F:1-175
1i
1zofH00
H:1-175
1j
1zofJ00
J:1-175
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Pfam Domains
(2, 20)
Info
all PFAM domains
1a: PFAM_AhpC_TSA_1zofJ01 (J:3-138)
1b: PFAM_AhpC_TSA_1zofJ02 (J:3-138)
1c: PFAM_AhpC_TSA_1zofJ03 (J:3-138)
1d: PFAM_AhpC_TSA_1zofJ04 (J:3-138)
1e: PFAM_AhpC_TSA_1zofJ05 (J:3-138)
1f: PFAM_AhpC_TSA_1zofJ06 (J:3-138)
1g: PFAM_AhpC_TSA_1zofJ07 (J:3-138)
1h: PFAM_AhpC_TSA_1zofJ08 (J:3-138)
1i: PFAM_AhpC_TSA_1zofJ09 (J:3-138)
1j: PFAM_AhpC_TSA_1zofJ10 (J:3-138)
2a: PFAM_1_cysPrx_C_1zofJ11 (J:158-175)
2b: PFAM_1_cysPrx_C_1zofJ12 (J:158-175)
2c: PFAM_1_cysPrx_C_1zofJ13 (J:158-175)
2d: PFAM_1_cysPrx_C_1zofJ14 (J:158-175)
2e: PFAM_1_cysPrx_C_1zofJ15 (J:158-175)
2f: PFAM_1_cysPrx_C_1zofJ16 (J:158-175)
2g: PFAM_1_cysPrx_C_1zofJ17 (J:158-175)
2h: PFAM_1_cysPrx_C_1zofJ18 (J:158-175)
2i: PFAM_1_cysPrx_C_1zofJ19 (J:158-175)
2j: PFAM_1_cysPrx_C_1zofJ20 (J:158-175)
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Clans
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)
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
AhpC-TSA
(28)
Helicobacter pylori J99 (Campylobacter pylori J99)
(1)
1a
AhpC-TSA-1zofJ01
J:3-138
1b
AhpC-TSA-1zofJ02
J:3-138
1c
AhpC-TSA-1zofJ03
J:3-138
1d
AhpC-TSA-1zofJ04
J:3-138
1e
AhpC-TSA-1zofJ05
J:3-138
1f
AhpC-TSA-1zofJ06
J:3-138
1g
AhpC-TSA-1zofJ07
J:3-138
1h
AhpC-TSA-1zofJ08
J:3-138
1i
AhpC-TSA-1zofJ09
J:3-138
1j
AhpC-TSA-1zofJ10
J:3-138
Clan
:
no clan defined [family: 1-cysPrx_C]
(19)
Family
:
1-cysPrx_C
(19)
Helicobacter pylori J99 (Campylobacter pylori J99)
(1)
2a
1-cysPrx_C-1zofJ11
J:158-175
2b
1-cysPrx_C-1zofJ12
J:158-175
2c
1-cysPrx_C-1zofJ13
J:158-175
2d
1-cysPrx_C-1zofJ14
J:158-175
2e
1-cysPrx_C-1zofJ15
J:158-175
2f
1-cysPrx_C-1zofJ16
J:158-175
2g
1-cysPrx_C-1zofJ17
J:158-175
2h
1-cysPrx_C-1zofJ18
J:158-175
2i
1-cysPrx_C-1zofJ19
J:158-175
2j
1-cysPrx_C-1zofJ20
J:158-175
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