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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC RESPONSE REGULATOR DOSR C-TERMINAL DOMAIN
 
Authors :  G. Wisedchaisri, M. Wu, A. E. Rice, D. M. Roberts, D. R. Sherman, W. G. J. Hol
Date :  06 May 05  (Deposition) - 31 Jan 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Helix-Turn-Helix, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Wisedchaisri, M. Wu, A. E. Rice, D. M. Roberts, D. R. Sherman, W. G. J. Hol
Structures Of Mycobacterium Tuberculosis Dosr And Dosr-Dna Complex Involved In Gene Activation During Adaptation To Hypoxic Latency.
J. Mol. Biol. V. 354 630 2005
PubMed-ID: 16246368  |  Reference-DOI: 10.1016/J.JMB.2005.09.048
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DORMANCY SURVIVAL REGULATOR
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET28(+)
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentC-TERMINAL DOMAIN
    GeneDOSR, DEVR, RV3133C
    Organism ScientificMYCOBACTERIUM TUBERCULOSIS
    Organism Taxid1773
    SynonymDOSR

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)AB      
Biological Unit 2 (1x)  CD    
Biological Unit 3 (1x)    EF  
Biological Unit 4 (1x)      GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric Unit (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1ZLJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZLJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZLJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZLJ)

(-) PROSITE Motifs  (2, 10)

Asymmetric Unit (2, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_LUXR_2PS50043 LuxR-type HTH domain profile.DEVR_MYCTU143-208
 
  2B:144-208
F:144-208
2HTH_LUXR_1PS00622 LuxR-type HTH domain signature.DEVR_MYCTU164-191
 
 
 
 
 
 
 
  8A:164-191
B:164-191
C:164-191
D:164-191
E:164-191
F:164-191
G:164-191
H:164-191
Biological Unit 1 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_LUXR_2PS50043 LuxR-type HTH domain profile.DEVR_MYCTU143-208
 
  1B:144-208
-
2HTH_LUXR_1PS00622 LuxR-type HTH domain signature.DEVR_MYCTU164-191
 
 
 
 
 
 
 
  2A:164-191
B:164-191
-
-
-
-
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_LUXR_2PS50043 LuxR-type HTH domain profile.DEVR_MYCTU143-208
 
  0-
-
2HTH_LUXR_1PS00622 LuxR-type HTH domain signature.DEVR_MYCTU164-191
 
 
 
 
 
 
 
  2-
-
C:164-191
D:164-191
-
-
-
-
Biological Unit 3 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_LUXR_2PS50043 LuxR-type HTH domain profile.DEVR_MYCTU143-208
 
  1-
F:144-208
2HTH_LUXR_1PS00622 LuxR-type HTH domain signature.DEVR_MYCTU164-191
 
 
 
 
 
 
 
  2-
-
-
-
E:164-191
F:164-191
-
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_LUXR_2PS50043 LuxR-type HTH domain profile.DEVR_MYCTU143-208
 
  0-
-
2HTH_LUXR_1PS00622 LuxR-type HTH domain signature.DEVR_MYCTU164-191
 
 
 
 
 
 
 
  2-
-
-
-
-
-
G:164-191
H:164-191

(-) Exons   (0, 0)

(no "Exon" information available for 1ZLJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:69
 aligned with DEVR_MYCTU | P9WMF9 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:69
                                   154       164       174       184       194       204         
           DEVR_MYCTU   145 DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRSRPP 213
               SCOP domains d1zlja_ A: automated matches                                          SCOP domains
               CATH domains 1zljA00 A:145-213 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) HTH_LUXR_2  PDB: - UniProt: 143-208                             ----- PROSITE (1)
                PROSITE (2) -------------------HTH_LUXR_1  PDB: A:164-191  ---------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj A 145 DPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKRSRPP 213
                                   154       164       174       184       194       204         
                                                       174-MSE             194-MSE               

Chain A from PDB  Type:PROTEIN  Length:69
 aligned with R4MI41_MYCTX | R4MI41 from UniProtKB/TrEMBL  Length:217

    Alignment length:69
                                   154       164       174       184       194       204         
         R4MI41_MYCTX   145 DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRSRPP 213
               SCOP domains d1zlja_ A: automated matches                                          SCOP domains
               CATH domains 1zljA00 A:145-213 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj A 145 DPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKRSRPP 213
                                   154       164       174       184       194       204         
                                                       174-MSE             194-MSE               

Chain B from PDB  Type:PROTEIN  Length:69
 aligned with DEVR_MYCTU | P9WMF9 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:69
                                   150       160       170       180       190       200         
           DEVR_MYCTU   141 AEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKR 209
               SCOP domains d1zljb_ B: automated matches                                          SCOP domains
               CATH domains 1zljB00 B:141-209 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --HTH_LUXR_2  PDB: B:144-208 UniProt: 143-208                       - PROSITE (1)
                PROSITE (2) -----------------------HTH_LUXR_1  PDB: B:164-191  ------------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj B 141 SHmQDPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKR 209
                              |    150       160       170   |   180       190   |   200         
                            143-MSE                        174-MSE             194-MSE           

Chain B from PDB  Type:PROTEIN  Length:69
 aligned with R4MI41_MYCTX | R4MI41 from UniProtKB/TrEMBL  Length:217

    Alignment length:69
                                   150       160       170       180       190       200         
         R4MI41_MYCTX   141 AEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKR 209
               SCOP domains d1zljb_ B: automated matches                                          SCOP domains
               CATH domains 1zljB00 B:141-209 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj B 141 SHmQDPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKR 209
                              |    150       160       170   |   180       190   |   200         
                            143-MSE                        174-MSE             194-MSE           

Chain C from PDB  Type:PROTEIN  Length:69
 aligned with DEVR_MYCTU | P9WMF9 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:69
                                   154       164       174       184       194       204         
           DEVR_MYCTU   145 DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRSRPP 213
               SCOP domains d1zljc_ C: automated matches                                          SCOP domains
               CATH domains 1zljC00 C:145-213 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) HTH_LUXR_2  PDB: - UniProt: 143-208                             ----- PROSITE (1)
                PROSITE (2) -------------------HTH_LUXR_1  PDB: C:164-191  ---------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj C 145 DPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKRSRPP 213
                                   154       164       174       184       194       204         
                                                       174-MSE             194-MSE               

Chain C from PDB  Type:PROTEIN  Length:69
 aligned with R4MI41_MYCTX | R4MI41 from UniProtKB/TrEMBL  Length:217

    Alignment length:69
                                   154       164       174       184       194       204         
         R4MI41_MYCTX   145 DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRSRPP 213
               SCOP domains d1zljc_ C: automated matches                                          SCOP domains
               CATH domains 1zljC00 C:145-213 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj C 145 DPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKRSRPP 213
                                   154       164       174       184       194       204         
                                                       174-MSE             194-MSE               

Chain D from PDB  Type:PROTEIN  Length:66
 aligned with DEVR_MYCTU | P9WMF9 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:66
                                   153       163       173       183       193       203      
           DEVR_MYCTU   144 QDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKR 209
               SCOP domains d1zljd_ D: automated matches                                       SCOP domains
               CATH domains 1zljD00 D:144-209 'winged helix' repressor DNA binding domain      CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) HTH_LUXR_2  PDB: - UniProt: 143-208                              - PROSITE (1)
                PROSITE (2) --------------------HTH_LUXR_1  PDB: D:164-191  ------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------ Transcript
                 1zlj D 144 QDPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKR 209
                                   153       163       173|      183       193|      203      
                                                        174-MSE             194-MSE           

Chain D from PDB  Type:PROTEIN  Length:66
 aligned with R4MI41_MYCTX | R4MI41 from UniProtKB/TrEMBL  Length:217

    Alignment length:66
                                   153       163       173       183       193       203      
         R4MI41_MYCTX   144 QDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKR 209
               SCOP domains d1zljd_ D: automated matches                                       SCOP domains
               CATH domains 1zljD00 D:144-209 'winged helix' repressor DNA binding domain      CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 1zlj D 144 QDPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKR 209
                                   153       163       173|      183       193|      203      
                                                        174-MSE             194-MSE           

Chain E from PDB  Type:PROTEIN  Length:69
 aligned with DEVR_MYCTU | P9WMF9 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:69
                                   154       164       174       184       194       204         
           DEVR_MYCTU   145 DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRSRPP 213
               SCOP domains d1zlje_ E: automated matches                                          SCOP domains
               CATH domains 1zljE00 E:145-213 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) HTH_LUXR_2  PDB: - UniProt: 143-208                             ----- PROSITE (1)
                PROSITE (2) -------------------HTH_LUXR_1  PDB: E:164-191  ---------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj E 145 DPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKRSRPP 213
                                   154       164       174       184       194       204         
                                                       174-MSE             194-MSE               

Chain E from PDB  Type:PROTEIN  Length:69
 aligned with R4MI41_MYCTX | R4MI41 from UniProtKB/TrEMBL  Length:217

    Alignment length:69
                                   154       164       174       184       194       204         
         R4MI41_MYCTX   145 DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRSRPP 213
               SCOP domains d1zlje_ E: automated matches                                          SCOP domains
               CATH domains 1zljE00 E:145-213 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj E 145 DPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKRSRPP 213
                                   154       164       174       184       194       204         
                                                       174-MSE             194-MSE               

Chain F from PDB  Type:PROTEIN  Length:69
 aligned with DEVR_MYCTU | P9WMF9 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:69
                                   150       160       170       180       190       200         
           DEVR_MYCTU   141 AEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKR 209
               SCOP domains d1zljf_ F: automated matches                                          SCOP domains
               CATH domains 1zljF00 F:141-209 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --HTH_LUXR_2  PDB: F:144-208 UniProt: 143-208                       - PROSITE (1)
                PROSITE (2) -----------------------HTH_LUXR_1  PDB: F:164-191  ------------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj F 141 SHmQDPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKR 209
                              |    150       160       170   |   180       190   |   200         
                            143-MSE                        174-MSE             194-MSE           

Chain F from PDB  Type:PROTEIN  Length:69
 aligned with R4MI41_MYCTX | R4MI41 from UniProtKB/TrEMBL  Length:217

    Alignment length:69
                                   150       160       170       180       190       200         
         R4MI41_MYCTX   141 AEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKR 209
               SCOP domains d1zljf_ F: automated matches                                          SCOP domains
               CATH domains 1zljF00 F:141-209 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj F 141 SHmQDPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKR 209
                              |    150       160       170   |   180       190   |   200         
                            143-MSE                        174-MSE             194-MSE           

Chain G from PDB  Type:PROTEIN  Length:69
 aligned with DEVR_MYCTU | P9WMF9 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:69
                                   154       164       174       184       194       204         
           DEVR_MYCTU   145 DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRSRPP 213
               SCOP domains d1zljg_ G: automated matches                                          SCOP domains
               CATH domains 1zljG00 G:145-213 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) HTH_LUXR_2  PDB: - UniProt: 143-208                             ----- PROSITE (1)
                PROSITE (2) -------------------HTH_LUXR_1  PDB: G:164-191  ---------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj G 145 DPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKRSRPP 213
                                   154       164       174       184       194       204         
                                                       174-MSE             194-MSE               

Chain G from PDB  Type:PROTEIN  Length:69
 aligned with R4MI41_MYCTX | R4MI41 from UniProtKB/TrEMBL  Length:217

    Alignment length:69
                                   154       164       174       184       194       204         
         R4MI41_MYCTX   145 DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRSRPP 213
               SCOP domains d1zljg_ G: automated matches                                          SCOP domains
               CATH domains 1zljG00 G:145-213 'winged helix' repressor DNA binding domain         CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1zlj G 145 DPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKRSRPP 213
                                   154       164       174       184       194       204         
                                                       174-MSE             194-MSE               

Chain H from PDB  Type:PROTEIN  Length:66
 aligned with DEVR_MYCTU | P9WMF9 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:66
                                   153       163       173       183       193       203      
           DEVR_MYCTU   144 QDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKR 209
               SCOP domains d1zljh_ H: automated matches                                       SCOP domains
               CATH domains 1zljH00 H:144-209 'winged helix' repressor DNA binding domain      CATH domains
           Pfam domains (1) ---GerE-1zljH01 H:147-204                                    ----- Pfam domains (1)
           Pfam domains (2) ---GerE-1zljH02 H:147-204                                    ----- Pfam domains (2)
           Pfam domains (3) ---GerE-1zljH03 H:147-204                                    ----- Pfam domains (3)
           Pfam domains (4) ---GerE-1zljH04 H:147-204                                    ----- Pfam domains (4)
           Pfam domains (5) ---GerE-1zljH05 H:147-204                                    ----- Pfam domains (5)
           Pfam domains (6) ---GerE-1zljH06 H:147-204                                    ----- Pfam domains (6)
           Pfam domains (7) ---GerE-1zljH07 H:147-204                                    ----- Pfam domains (7)
           Pfam domains (8) ---GerE-1zljH08 H:147-204                                    ----- Pfam domains (8)
         Sec.struct. author .......hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) HTH_LUXR_2  PDB: - UniProt: 143-208                              - PROSITE (1)
                PROSITE (2) --------------------HTH_LUXR_1  PDB: H:164-191  ------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------ Transcript
                 1zlj H 144 QDPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKR 209
                                   153       163       173|      183       193|      203      
                                                        174-MSE             194-MSE           

Chain H from PDB  Type:PROTEIN  Length:66
 aligned with R4MI41_MYCTX | R4MI41 from UniProtKB/TrEMBL  Length:217

    Alignment length:66
                                   153       163       173       183       193       203      
         R4MI41_MYCTX   144 QDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKR 209
               SCOP domains d1zljh_ H: automated matches                                       SCOP domains
               CATH domains 1zljH00 H:144-209 'winged helix' repressor DNA binding domain      CATH domains
           Pfam domains (1) ---GerE-1zljH01 H:147-204                                    ----- Pfam domains (1)
           Pfam domains (2) ---GerE-1zljH02 H:147-204                                    ----- Pfam domains (2)
           Pfam domains (3) ---GerE-1zljH03 H:147-204                                    ----- Pfam domains (3)
           Pfam domains (4) ---GerE-1zljH04 H:147-204                                    ----- Pfam domains (4)
           Pfam domains (5) ---GerE-1zljH05 H:147-204                                    ----- Pfam domains (5)
           Pfam domains (6) ---GerE-1zljH06 H:147-204                                    ----- Pfam domains (6)
           Pfam domains (7) ---GerE-1zljH07 H:147-204                                    ----- Pfam domains (7)
           Pfam domains (8) ---GerE-1zljH08 H:147-204                                    ----- Pfam domains (8)
         Sec.struct. author .......hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 1zlj H 144 QDPLSGLTDQERTLLGLLSEGLTNKQIADRmFLAEKTVKNYVSRLLAKLGmERRTQAAVFATELKR 209
                                   153       163       173|      183       193|      203      
                                                        174-MSE             194-MSE           

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (1, 8)

Asymmetric Unit

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: HTH (544)
(-)
Family: GerE (15)
1aGerE-1zljH01H:147-204
1bGerE-1zljH02H:147-204
1cGerE-1zljH03H:147-204
1dGerE-1zljH04H:147-204
1eGerE-1zljH05H:147-204
1fGerE-1zljH06H:147-204
1gGerE-1zljH07H:147-204
1hGerE-1zljH08H:147-204

(-) Gene Ontology  (19, 23)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (R4MI41_MYCTX | R4MI41)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Chain A,B,C,D,E,F,G,H   (DEVR_MYCTU | P9WMF9)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0022611    dormancy process    A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0019217    regulation of fatty acid metabolic process    Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving fatty acids.
    GO:0080134    regulation of response to stress    Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0001666    response to hypoxia    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0044161    host cell cytoplasmic vesicle    A vesicle formed of membrane or protein, found in the cytoplasm of a host cell.
    GO:0072493    host cell endosome lumen    The volume enclosed by the membranes of the host cell endosome.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DEVR_MYCTU | P9WMF91zlk 3c3w 3c57

(-) Related Entries Specified in the PDB File

1zlk