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Biol. Unit 4
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Asym.Unit (96 KB)
Biol.Unit 1 (24 KB)
Biol.Unit 2 (24 KB)
Biol.Unit 3 (24 KB)
Biol.Unit 4 (24 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC RESPONSE REGULATOR DOSR C-TERMINAL DOMAIN
Authors
:
G. Wisedchaisri, M. Wu, A. E. Rice, D. M. Roberts, D. R. Sherman, W. G. J. Hol
Date
:
06 May 05 (Deposition) - 31 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Helix-Turn-Helix, Transcription
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Wisedchaisri, M. Wu, A. E. Rice, D. M. Roberts, D. R. Sherman, W. G. J. Hol
Structures Of Mycobacterium Tuberculosis Dosr And Dosr-Dna Complex Involved In Gene Activation During Adaptation To Hypoxic Latency.
J. Mol. Biol. V. 354 630 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
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No.
Name
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Type
Full Name
1
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
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Sites
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
2: HTH_LUXR_1 (G:164-191,H:164-191)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_LUXR_2
PS50043
LuxR-type HTH domain profile.
DEVR_MYCTU
143-208
0
-
-
2
HTH_LUXR_1
PS00622
LuxR-type HTH domain signature.
DEVR_MYCTU
164-191
2
-
-
-
-
-
-
G:164-191
H:164-191
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1zlja_ (A:)
1b: SCOP_d1zljb_ (B:)
1c: SCOP_d1zljc_ (C:)
1d: SCOP_d1zljd_ (D:)
1e: SCOP_d1zlje_ (E:)
1f: SCOP_d1zljf_ (F:)
1g: SCOP_d1zljg_ (G:)
1h: SCOP_d1zljh_ (H:)
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
C-terminal effector domain of the bipartite response regulators
(45)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Mycobacterium tuberculosis [TaxId: 1773]
(3)
1a
d1zlja_
A:
1b
d1zljb_
B:
1c
d1zljc_
C:
1d
d1zljd_
D:
1e
d1zlje_
E:
1f
d1zljf_
F:
1g
d1zljg_
G:
1h
d1zljh_
H:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1zljA00 (A:145-213)
1b: CATH_1zljC00 (C:145-213)
1c: CATH_1zljE00 (E:145-213)
1d: CATH_1zljG00 (G:145-213)
1e: CATH_1zljB00 (B:141-209)
1f: CATH_1zljF00 (F:141-209)
1g: CATH_1zljD00 (D:144-209)
1h: CATH_1zljH00 (H:144-209)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(1)
1a
1zljA00
A:145-213
1b
1zljC00
C:145-213
1c
1zljE00
E:145-213
1d
1zljG00
G:145-213
1e
1zljB00
B:141-209
1f
1zljF00
F:141-209
1g
1zljD00
D:144-209
1h
1zljH00
H:144-209
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_GerE_1zljH01 (H:147-204)
1b: PFAM_GerE_1zljH02 (H:147-204)
1c: PFAM_GerE_1zljH03 (H:147-204)
1d: PFAM_GerE_1zljH04 (H:147-204)
1e: PFAM_GerE_1zljH05 (H:147-204)
1f: PFAM_GerE_1zljH06 (H:147-204)
1g: PFAM_GerE_1zljH07 (H:147-204)
1h: PFAM_GerE_1zljH08 (H:147-204)
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Clan
:
HTH
(544)
Family
:
GerE
(15)
Mycobacterium tuberculosis
(2)
1a
GerE-1zljH01
H:147-204
1b
GerE-1zljH02
H:147-204
1c
GerE-1zljH03
H:147-204
1d
GerE-1zljH04
H:147-204
1e
GerE-1zljH05
H:147-204
1f
GerE-1zljH06
H:147-204
1g
GerE-1zljH07
H:147-204
1h
GerE-1zljH08
H:147-204
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (96 KB)
Header - Asym.Unit
Biol.Unit 1 (24 KB)
Header - Biol.Unit 1
Biol.Unit 2 (24 KB)
Header - Biol.Unit 2
Biol.Unit 3 (24 KB)
Header - Biol.Unit 3
Biol.Unit 4 (24 KB)
Header - Biol.Unit 4
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