Chain A from PDB Type:PROTEIN Length:180
aligned with ORN_ECOL6 | P0A785 from UniProtKB/Swiss-Prot Length:181
Alignment length:180
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
ORN_ECOL6 2 SANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL 181
SCOP domains d1ytaa1 A:1-180 Oligoribonuclease SCOP domains
CATH domains 1ytaA00 A:1-180 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ......eeeeeeee.........eeeeeeeee.....eeee...ee...hhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhhhh...eeehhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1yta A 1 SANENNLIWIDLEmTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALmDDWNVRTHTASGLVERVKASTmGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYmPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAmDDIRESVAELAYYREHFIKL 180
10 | 20 30 40 50 | 60 70 80 90 100 110 120 130 140 150 160 170 180
14-MSE 57-MSE 79-MSE 119-MSE 160-MSE
Chain A from PDB Type:PROTEIN Length:180
aligned with ORN_ECOLI | P0A784 from UniProtKB/Swiss-Prot Length:181
Alignment length:180
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
ORN_ECOLI 2 SANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL 181
SCOP domains d1ytaa1 A:1-180 Oligoribonuclease SCOP domains
CATH domains 1ytaA00 A:1-180 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ......eeeeeeee.........eeeeeeeee.....eeee...ee...hhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhhhh...eeehhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1yta A 1 SANENNLIWIDLEmTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALmDDWNVRTHTASGLVERVKASTmGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYmPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAmDDIRESVAELAYYREHFIKL 180
10 | 20 30 40 50 | 60 70 80 90 100 110 120 130 140 150 160 170 180
14-MSE 57-MSE 79-MSE 119-MSE 160-MSE
Chain B from PDB Type:PROTEIN Length:180
aligned with ORN_ECOL6 | P0A785 from UniProtKB/Swiss-Prot Length:181
Alignment length:180
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
ORN_ECOL6 2 SANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL 181
SCOP domains d1ytab_ B: Oligoribonuclease SCOP domains
CATH domains 1ytaB00 B:1-180 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ......eeeeeeee.........eeeeeeeee.....eeee...ee...hhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1yta B 1 SANENNLIWIDLEmTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALmDDWNVRTHTASGLVERVKASTmGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYmPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAmDDIRESVAELAYYREHFIKL 180
10 | 20 30 40 50 | 60 70 80 90 100 110 120 130 140 150 160 170 180
14-MSE 57-MSE 79-MSE 119-MSE 160-MSE
Chain B from PDB Type:PROTEIN Length:180
aligned with ORN_ECOLI | P0A784 from UniProtKB/Swiss-Prot Length:181
Alignment length:180
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
ORN_ECOLI 2 SANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL 181
SCOP domains d1ytab_ B: Oligoribonuclease SCOP domains
CATH domains 1ytaB00 B:1-180 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ......eeeeeeee.........eeeeeeeee.....eeee...ee...hhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1yta B 1 SANENNLIWIDLEmTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALmDDWNVRTHTASGLVERVKASTmGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYmPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAmDDIRESVAELAYYREHFIKL 180
10 | 20 30 40 50 | 60 70 80 90 100 110 120 130 140 150 160 170 180
14-MSE 57-MSE 79-MSE 119-MSE 160-MSE
Chain C from PDB Type:PROTEIN Length:180
aligned with ORN_ECOL6 | P0A785 from UniProtKB/Swiss-Prot Length:181
Alignment length:180
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
ORN_ECOL6 2 SANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL 181
SCOP domains d1ytac_ C: Oligoribonuclease SCOP domains
CATH domains 1ytaC00 C:1-180 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ......eeeeeeee.........eeeeeeeee.....eeee...ee...hhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........eee.hhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1yta C 1 SANENNLIWIDLEmTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALmDDWNVRTHTASGLVERVKASTmGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYmPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAmDDIRESVAELAYYREHFIKL 180
10 | 20 30 40 50 | 60 70 80 90 100 110 120 130 140 150 160 170 180
14-MSE 57-MSE 79-MSE 119-MSE 160-MSE
Chain C from PDB Type:PROTEIN Length:180
aligned with ORN_ECOLI | P0A784 from UniProtKB/Swiss-Prot Length:181
Alignment length:180
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
ORN_ECOLI 2 SANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL 181
SCOP domains d1ytac_ C: Oligoribonuclease SCOP domains
CATH domains 1ytaC00 C:1-180 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ......eeeeeeee.........eeeeeeeee.....eeee...ee...hhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........eee.hhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1yta C 1 SANENNLIWIDLEmTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALmDDWNVRTHTASGLVERVKASTmGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYmPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAmDDIRESVAELAYYREHFIKL 180
10 | 20 30 40 50 | 60 70 80 90 100 110 120 130 140 150 160 170 180
14-MSE 57-MSE 79-MSE 119-MSE 160-MSE
Chain D from PDB Type:PROTEIN Length:180
aligned with ORN_ECOL6 | P0A785 from UniProtKB/Swiss-Prot Length:181
Alignment length:180
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
ORN_ECOL6 2 SANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL 181
SCOP domains d1ytad_ D: Oligoribonuclease SCOP domains
CATH domains 1ytaD00 D:1-180 [code=3.30.420.10, no name defined] CATH domains
Pfam domains (1) -------RNase_T-1ytaD01 D:8-170 ---------- Pfam domains (1)
Pfam domains (2) -------RNase_T-1ytaD02 D:8-170 ---------- Pfam domains (2)
Pfam domains (3) -------RNase_T-1ytaD03 D:8-170 ---------- Pfam domains (3)
Pfam domains (4) -------RNase_T-1ytaD04 D:8-170 ---------- Pfam domains (4)
Sec.struct. author ......eeeeeeee.........eeeeeeeee.....eeee...ee...hhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1yta D 1 SANENNLIWIDLEmTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALmDDWNVRTHTASGLVERVKASTmGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYmPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAmDDIRESVAELAYYREHFIKL 180
10 | 20 30 40 50 | 60 70 80 90 100 110 120 130 140 150 160 170 180
14-MSE 57-MSE 79-MSE 119-MSE 160-MSE
Chain D from PDB Type:PROTEIN Length:180
aligned with ORN_ECOLI | P0A784 from UniProtKB/Swiss-Prot Length:181
Alignment length:180
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
ORN_ECOLI 2 SANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL 181
SCOP domains d1ytad_ D: Oligoribonuclease SCOP domains
CATH domains 1ytaD00 D:1-180 [code=3.30.420.10, no name defined] CATH domains
Pfam domains (1) -------RNase_T-1ytaD01 D:8-170 ---------- Pfam domains (1)
Pfam domains (2) -------RNase_T-1ytaD02 D:8-170 ---------- Pfam domains (2)
Pfam domains (3) -------RNase_T-1ytaD03 D:8-170 ---------- Pfam domains (3)
Pfam domains (4) -------RNase_T-1ytaD04 D:8-170 ---------- Pfam domains (4)
Sec.struct. author ......eeeeeeee.........eeeeeeeee.....eeee...ee...hhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1yta D 1 SANENNLIWIDLEmTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALmDDWNVRTHTASGLVERVKASTmGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYmPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAmDDIRESVAELAYYREHFIKL 180
10 | 20 30 40 50 | 60 70 80 90 100 110 120 130 140 150 160 170 180
14-MSE 57-MSE 79-MSE 119-MSE 160-MSE
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |