1YJ0 - JenaLib

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Title :   CRYSTAL STRUCTURES OF CHICKEN ANNEXIN V IN COMPLEX WITH ZN2+

Authors :   E. A. Ortlund, G. Chai, B. Genge, L. N. Y. Wu, R. E. Wuthier, L. Lebioda

Date :   11 Jan 05 (Deposition) - 08 Mar 05 (Release) - 16 Nov 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.95

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (3x)

Keywords :   Annexin; Membrane Binding; Matrix Vessicle, Protein And Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. A. Ortlund, G. Chai, B. Genge, L. N. Y. Wu, R. E. Wuthier, L. Lebioda
Crystal Structures Of Chicken Annexin A5 In Complex With Functional Modifiers Ca2+ And Zn2+ Reveal Zn2+ Induced Formation Of Non-Planar Assemblies
Annexins V. 1 183 2005
PubMed: search

Molecule 1 - ANNEXIN A5
	Chains	:	A
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031
	Other Details	:	GENE ANXA5, ANX5
	Synonym	:	ANNEXIN V

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (3x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 10)

No.	Name	Count	Type	Full Name
1	SO4	8	Ligand/Ion	SULFATE ION
2	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 8)

No.	Name	Count	Type	Full Name
1	SO4	8	Ligand/Ion	SULFATE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 24)

No.	Name	Count	Type	Full Name
1	SO4	24	Ligand/Ion	SULFATE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:70 , VAL A:82 , ARG A:86 , HIS A:94 , ZN A:402	BINDING SITE FOR RESIDUE SO4 A 500
2	AC2	SOFTWARE	GLY A:75 , LYS A:76	BINDING SITE FOR RESIDUE SO4 A 501
3	AC3	SOFTWARE	ARG A:25 , LYS A:29 , ARG A:63	BINDING SITE FOR RESIDUE SO4 A 502
4	AC4	SOFTWARE	LYS A:101	BINDING SITE FOR RESIDUE SO4 A 503
5	AC5	SOFTWARE	ARG A:285 , ARG A:289 , SER A:295 , HOH A:630	BINDING SITE FOR RESIDUE SO4 A 504
6	AC6	SOFTWARE	GLY A:306 , ARG A:309 , HOH A:631	BINDING SITE FOR RESIDUE SO4 A 505
7	AC7	SOFTWARE	ALA A:115 , SER A:116 , ARG A:117 , CYS A:243	BINDING SITE FOR RESIDUE SO4 A 510
8	AC8	SOFTWARE	HIS A:286 , HOH A:661	BINDING SITE FOR RESIDUE ZN A 401
9	AC9	SOFTWARE	HIS A:94 , HIS A:98 , SO4 A:500	BINDING SITE FOR RESIDUE ZN A 402

(no "SS Bond" information available for 1YJ0)

Asymmetric Unit

No.	Residues
1	Ser A:13	-	Pro A:14

(no "SAP(SNP)/Variant" information available for 1YJ0)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANNEXIN	PS00223	Annexins repeated domain signature.	ANXA5_CHICK	32-84 104-156 188-240 263-315	4	A:32-84 A:104-156 A:188-240 A:263-315

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANNEXIN	PS00223	Annexins repeated domain signature.	ANXA5_CHICK	32-84 104-156 188-240 263-315	4	A:32-84 A:104-156 A:188-240 A:263-315

Biological Unit 2 (1, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANNEXIN	PS00223	Annexins repeated domain signature.	ANXA5_CHICK	32-84 104-156 188-240 263-315	12	A:32-84 A:104-156 A:188-240 A:263-315

(no "Exon" information available for 1YJ0)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:317
 aligned with ANXA5_CHICK | P17153 from UniProtKB/Swiss-Prot  Length:321

    Alignment length:317
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       
          ANXA5_CHICK     3 KYTRGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLLCGGD 319
               SCOP domains d1yj0a_ A: Annexin V                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -----------1yj0A01 A:14-86  [code=1.10.220.10, no name defined]                     1yj0A02 A:87-160  [code=1.10.220.10, no name defined]                     1yj0A03 A:161-246  [code=1.10.220.10, no name defined]                                1yj0A04 A:247-319  [code=1.10.220.10, no name defined]                    CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Annexin-1yj0A01 A:250-315                                         ---- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Annexin-1yj0A02 A:250-315                                         ---- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Annexin-1yj0A03 A:250-315                                         ---- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Annexin-1yj0A04 A:250-315                                         ---- Pfam domains (4)
         Sec.struct. author .............hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh...hhhhhhhhhhhh.........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------ANNEXIN  PDB: A:32-84 UniProt: 32-84                 -------------------ANNEXIN  PDB: A:104-156 UniProt: 104-156             -------------------------------ANNEXIN  PDB: A:188-240 UniProt: 188-240             ----------------------ANNEXIN  PDB: A:263-315 UniProt: 263-315             ---- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yj0 A   3 KYTRGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLLCGGD 319
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Annexin (61)

Superfamily: Annexin (61)

Family: Annexin (56)

Protein domain: Annexin V (31)

Chicken (Gallus gallus) [TaxId: 9031] (3)

d1yj0a_

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Annexin V; domain 1 (80)

Homologous Superfamily: [code=1.10.220.10, no name defined] (58)

Chicken (Gallus gallus) (3)

1a	1yj0A02	A:87-160
1b	1yj0A03	A:161-246
1c	1yj0A01	A:14-86
1d	1yj0A04	A:247-319

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Annexin] (14)

Family: Annexin (14)

Gallus gallus (Chicken) (2)

1a	Annexin-1yj0A01	A:250-315
1b	Annexin-1yj0A02	A:250-315
1c	Annexin-1yj0A03	A:250-315
1d	Annexin-1yj0A04	A:250-315

Asymmetric Unit(hide GO term definitions)

Chain A (ANXA5_CHICK | P17153)

molecular function
	GO:0005262	calcium channel activity	Enables the facilitated diffusion of a calcium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0005544	calcium-dependent phospholipid binding	Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0055074	calcium ion homeostasis	Any process involved in the maintenance of an internal steady state of calcium ions within an organism or cell.
	GO:0070588	calcium ion transmembrane transport	A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
	GO:0050819	negative regulation of coagulation	Any process that stops, prevents, or reduces the frequency, rate or extent of coagulation.
cellular component
	GO:0034704	calcium channel complex	An ion channel complex through which calcium ions pass.
	GO:0031982	vesicle	Any small, fluid-filled, spherical organelle enclosed by membrane.

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		Ser A:13 - Pro A:14	[ RasMol ]

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	ANXA5_CHICK \| P17153	:	1ala 1yii

1yii	ANNEXIN A5 IN COMPLEX WITH CALCIUM

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 10)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

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