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Asym./Biol. Unit (Jmol Viewer)

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Title :   STRUCTURE OF CHICKEN ANNEXIN V AT 2.25-ANGSTROMS RESOLUTION

Authors :   D. A. Waller, M. C. Bewley, R. Huber

Date :   14 Jan 93 (Deposition) - 31 Oct 93 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym./Biol. Unit : A

Keywords :   Calcium/Phospholipid-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. C. Bewley, C. M. Boustead, J. H. Walker, D. A. Waller, R. Huber
Structure Of Chicken Annexin V At 2. 25-A Resolution.
Biochemistry V. 32 3923 1993
PubMed-ID: 8471604 | Reference-DOI: 10.1021/BI00066A011
(for further references see the PDB file header)

Molecule 1 - ANNEXIN V
	Chains	:	A
	Engineered	:	YES
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 3)

No.	Name	Count	Type	Full Name
1	CA	3	Ligand/Ion	CALCIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:28 , GLY A:30 , GLY A:32 , GLU A:72	BINDING SITE FOR RESIDUE CA A 400
2	AC2	SOFTWARE	ILE A:100 , GLY A:102 , GLY A:104 , GLU A:144	BINDING SITE FOR RESIDUE CA A 401
3	AC3	SOFTWARE	MET A:259 , GLY A:261 , GLY A:263 , ASP A:303 , HOH A:469	BINDING SITE FOR RESIDUE CA A 402
4	CA1	UNKNOWN	MET A:28 , GLY A:30 , GLY A:32 , GLU A:72	NULL
5	CA2	UNKNOWN	ILE A:100 , GLY A:102 , GLY A:104 , GLU A:144	NULL
6	CA3	UNKNOWN	MET A:259 , GLY A:261 , GLY A:263 , ASP A:303 , HOH A:469	NULL

(no "SS Bond" information available for 1ALA)

Asymmetric/Biological Unit

No.	Residues
1	Ser A:13	-	Pro A:14

(no "SAP(SNP)/Variant" information available for 1ALA)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANNEXIN	PS00223	Annexins repeated domain signature.	ANXA5_CHICK	32-84 104-156 188-240 263-315	4	A:32-84 A:104-156 A:188-240 A:263-315

(no "Exon" information available for 1ALA)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:316
 aligned with ANXA5_CHICK | P17153 from UniProtKB/Swiss-Prot  Length:321

    Alignment length:316
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312      
          ANXA5_CHICK     3 KYTRGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLLCGG 318
               SCOP domains d1alaa_ A: Annexin V                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -----------1alaA01 A:14-86  [code=1.10.220.10, no name defined]                     1alaA02 A:87-160  [code=1.10.220.10, no name defined]                     1alaA03 A:161-246  [code=1.10.220.10, no name defined]                                1alaA04 A:247-318  [code=1.10.220.10, no name defined]                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhh......hhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhh...........hhhhhhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhh...hhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhh........hhhhhhhhhh.....hhhhhhhhhhhh...hhhhhhhh...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------ANNEXIN  PDB: A:32-84 UniProt: 32-84                 -------------------ANNEXIN  PDB: A:104-156 UniProt: 104-156             -------------------------------ANNEXIN  PDB: A:188-240 UniProt: 188-240             ----------------------ANNEXIN  PDB: A:263-315 UniProt: 263-315             --- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ala A   3 KYTRGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVEEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLLCGG 318
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Annexin (61)

Superfamily: Annexin (61)

Family: Annexin (56)

Protein domain: Annexin V (31)

Chicken (Gallus gallus) [TaxId: 9031] (3)

d1alaa_

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Annexin V; domain 1 (80)

Homologous Superfamily: [code=1.10.220.10, no name defined] (58)

Chicken (Gallus gallus) (3)

1a	1alaA02	A:87-160
1b	1alaA03	A:161-246
1c	1alaA01	A:14-86
1d	1alaA04	A:247-318

(no "Pfam Domain" information available for 1ALA)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ANXA5_CHICK | P17153)

molecular function
	GO:0005262	calcium channel activity	Enables the facilitated diffusion of a calcium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0005544	calcium-dependent phospholipid binding	Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0055074	calcium ion homeostasis	Any process involved in the maintenance of an internal steady state of calcium ions within an organism or cell.
	GO:0070588	calcium ion transmembrane transport	A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
	GO:0050819	negative regulation of coagulation	Any process that stops, prevents, or reduces the frequency, rate or extent of coagulation.
cellular component
	GO:0034704	calcium channel complex	An ion channel complex through which calcium ions pass.
	GO:0031982	vesicle	Any small, fluid-filled, spherical organelle enclosed by membrane.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Ser A:13 - Pro A:14	[ RasMol ]

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	ANXA5_CHICK \| P17153	:	1yii 1yj0

(no "Related Entries Specified in the PDB File" available for 1ALA)

Description

Compounds

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Ligands, Modified Residues, Ions (1, 3)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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