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(-) Description

Title :  THE MECHANISM OF THE SCHIFF BASE FORMING FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE: STRUCTURAL ANALYSIS OF REACTION INTERMEDIATES
 
Authors :  E. Lorentzen, R. Hensel, B. Siebers, E. Pohl
Date :  27 Sep 04  (Deposition) - 23 Mar 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Aldolase, Fructose 1, 6-Bisphosphate, Tim Barrel, Glycolytic, Archaeal, Catalytic Mechanism, Reaction Intermediate, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Lorentzen, B. Siebers, R. Hensel, E. Pohl
Mechanism Of The Schiff Base Forming Fructose-1, 6-Bisphosphate Aldolase: Structural Analysis Of Reaction Intermediates
Biochemistry V. 44 4222 2005
PubMed-ID: 15766250  |  Reference-DOI: 10.1021/BI048192O

(-) Compounds

Molecule 1 - FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS I
    Chains: A, B, C, D, E, F, G, H, I, J
    EC Number: 4.1.2.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: DE3
    Mutation: YES
    Organism Scientific: THERMOPROTEUS TENAX
    Organism Taxid: 2271
    Other Details: CYCLIC FBP BOUND
    Synonym: FBP ALDOLASE

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1FBP10Ligand/IonFRUCTOSE-1,6-DIPHOSPHATE
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1FBP5Ligand/IonFRUCTOSE-1,6-DIPHOSPHATE
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1FBP5Ligand/IonFRUCTOSE-1,6-DIPHOSPHATE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:22 , ASP A:24 , HIS A:25 , GLU A:28 , HIS A:29 , ARG A:148 , LYS A:177 , LYS A:179 , SER A:202 , GLY A:203 , GLY A:204 , ALA A:229 , VAL A:230 , GLY A:231 , ARG A:232 , HOH A:2114 , HOH A:2116 , HOH A:2139BINDING SITE FOR RESIDUE FBP A 270
02AC2SOFTWAREASP B:24 , HIS B:25 , GLU B:28 , HIS B:29 , ARG B:148 , LYS B:177 , LYS B:179 , SER B:202 , GLY B:203 , GLY B:204 , ALA B:229 , VAL B:230 , GLY B:231 , ARG B:232 , HOH B:2123 , HOH B:2151 , HOH B:2152 , HOH B:2153 , HOH B:2154BINDING SITE FOR RESIDUE FBP B 270
03AC3SOFTWAREASP C:24 , HIS C:25 , GLU C:28 , HIS C:29 , ARG C:148 , LYS C:177 , LYS C:179 , SER C:202 , GLY C:203 , GLY C:204 , ALA C:229 , VAL C:230 , GLY C:231 , ARG C:232 , HOH C:2056 , HOH C:2108 , HOH C:2118 , HOH C:2119BINDING SITE FOR RESIDUE FBP C 270
04AC4SOFTWAREALA D:22 , ASP D:24 , HIS D:25 , GLU D:28 , HIS D:29 , ARG D:148 , LYS D:177 , LYS D:179 , SER D:202 , GLY D:203 , GLY D:204 , VAL D:230 , GLY D:231 , ARG D:232 , HOH D:2096 , HOH D:2109 , HOH D:2110 , HOH D:2111BINDING SITE FOR RESIDUE FBP D 270
05AC5SOFTWAREALA E:22 , ASP E:24 , HIS E:25 , GLU E:28 , HIS E:29 , ARG E:148 , LYS E:177 , LYS E:179 , SER E:202 , GLY E:203 , GLY E:204 , ALA E:229 , VAL E:230 , GLY E:231 , ARG E:232 , HOH E:2010 , HOH E:2121 , HOH E:2133 , HOH E:2134 , HOH E:2135BINDING SITE FOR RESIDUE FBP E 270
06AC6SOFTWAREALA F:22 , ASP F:24 , HIS F:25 , GLU F:28 , HIS F:29 , ARG F:148 , LYS F:177 , LYS F:179 , SER F:202 , GLY F:203 , GLY F:204 , ALA F:229 , VAL F:230 , GLY F:231 , ARG F:232 , HOH F:2107 , HOH F:2115BINDING SITE FOR RESIDUE FBP F 270
07AC7SOFTWAREALA G:22 , ASP G:24 , HIS G:25 , GLU G:28 , HIS G:29 , ARG G:148 , LYS G:177 , LYS G:179 , SER G:202 , GLY G:203 , GLY G:204 , ALA G:229 , VAL G:230 , GLY G:231 , ARG G:232 , HOH G:2117 , HOH G:2132 , HOH G:2133BINDING SITE FOR RESIDUE FBP G 270
08AC8SOFTWAREALA H:22 , ASP H:24 , HIS H:25 , GLU H:28 , HIS H:29 , ARG H:148 , LYS H:177 , LYS H:179 , SER H:202 , GLY H:203 , GLY H:204 , ALA H:229 , VAL H:230 , GLY H:231 , ARG H:232 , HOH H:2075 , HOH H:2134 , HOH H:2147BINDING SITE FOR RESIDUE FBP H 270
09AC9SOFTWAREALA I:22 , ASP I:24 , HIS I:25 , GLU I:28 , HIS I:29 , ARG I:148 , LYS I:177 , LYS I:179 , SER I:202 , GLY I:203 , GLY I:204 , ALA I:229 , VAL I:230 , GLY I:231 , ARG I:232 , HOH I:2073 , HOH I:2131 , HOH I:2133BINDING SITE FOR RESIDUE FBP I 270
10BC1SOFTWAREALA J:22 , ASP J:24 , HIS J:25 , GLU J:28 , HIS J:29 , ARG J:148 , LYS J:177 , LYS J:179 , SER J:202 , GLY J:203 , GLY J:204 , ALA J:229 , VAL J:230 , GLY J:231 , ARG J:232 , HOH J:2135 , HOH J:2158 , HOH J:2159BINDING SITE FOR RESIDUE FBP J 270

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1W8S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1W8S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1W8S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1W8S)

(-) Exons   (0, 0)

(no "Exon" information available for 1W8S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d1w8sa1 A:3-252 Archaeal fructose 1,6-bisphosphate aldolase                                                                                                                                                                                                SCOP domains
               CATH domains 1w8sA00 A:3-252 Aldolase class I                                                                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8s A   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain B from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d1w8sb_ B: automated matches                                                                                                                                                                                                                               SCOP domains
               CATH domains 1w8sB00 B:3-252 Aldolase class I                                                                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeehhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8s B   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain C from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d1w8sc_ C: automated matches                                                                                                                                                                                                                               SCOP domains
               CATH domains 1w8sC00 C:3-252 Aldolase class I                                                                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...eeeeehhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8s C   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain D from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d1w8sd_ D: automated matches                                                                                                                                                                                                                               SCOP domains
               CATH domains 1w8sD00 D:3-252 Aldolase class I                                                                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeehhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8s D   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain E from PDB  Type:PROTEIN  Length:252
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252  
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVYGG 254
               SCOP domains d1w8se_ E: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1w8sE00 E:3-254 Aldolase class I                                                                                                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1w8s E   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVYGG 254
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252  


Chain F from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d1w8sf_ F: automated matches                                                                                                                                                                                                                               SCOP domains
               CATH domains 1w8sF00 F:3-252 Aldolase class I                                                                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8s F   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain G from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d1w8sg_ G: automated matches                                                                                                                                                                                                                               SCOP domains
               CATH domains 1w8sG00 G:3-252 Aldolase class I                                                                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8s G   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain H from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d1w8sh_ H: automated matches                                                                                                                                                                                                                               SCOP domains
               CATH domains 1w8sH00 H:3-252 Aldolase class I                                                                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8s H   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain I from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d1w8si_ I: automated matches                                                                                                                                                                                                                               SCOP domains
               CATH domains 1w8sI00 I:3-252 Aldolase class I                                                                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8s I   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain J from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d1w8sj_ J: automated matches                                                                                                                                                                                                                               SCOP domains
               CATH domains 1w8sJ00 J:3-252 Aldolase class I                                                                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8s J   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 10)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 10)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: Alpha-Beta Barrel (2994)
(-)
Topology: TIM Barrel (2806)
(-)
Homologous Superfamily: Aldolase class I (887)
(-)
Thermoproteus tenax. Organism_taxid: 2271. (6)
1a1w8sE00E:3-254
1b1w8sA00A:3-252
1c1w8sB00B:3-252
1d1w8sC00C:3-252
1e1w8sD00D:3-252
1f1w8sF00F:3-252
1g1w8sG00G:3-252
1h1w8sH00H:3-252
1i1w8sI00I:3-252
1j1w8sJ00J:3-252

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1W8S)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (ALF1_THETK | P58315)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004332    fructose-bisphosphate aldolase activity    Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde-3-phosphate.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1w8s
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  ALF1_THETK | P58315
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALF1_THETK | P58315: 1ojx 1ok4 1ok6 2yce

(-) Related Entries Specified in the PDB File

1ojx CRYSTAL STRUCTURE OF AN ARCHAEAL FRUCTOSE 1 ,6-BISPHOSPHATE ALDOLASE
1ok4 ARCHAEAL FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE COVALENTLY BOUND TO THE SUBSTRATE DIHYDROXYACETONE PHOSPHATE
1ok6 ORTHORHOMBIC CRYSTAL FORM OF AN ARCHAEAL FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE
1w8r FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE, ANALYSIS OF REACTION INTERMEDIATES