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1W8S
Biol. Unit 1
Info
Asym.Unit (423 KB)
Biol.Unit 1 (211 KB)
Biol.Unit 2 (212 KB)
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(1)
Title
:
THE MECHANISM OF THE SCHIFF BASE FORMING FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE: STRUCTURAL ANALYSIS OF REACTION INTERMEDIATES
Authors
:
E. Lorentzen, R. Hensel, B. Siebers, E. Pohl
Date
:
27 Sep 04 (Deposition) - 23 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Aldolase, Fructose 1, 6-Bisphosphate, Tim Barrel, Glycolytic, Archaeal, Catalytic Mechanism, Reaction Intermediate, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
E. Lorentzen, B. Siebers, R. Hensel, E. Pohl
Mechanism Of The Schiff Base Forming Fructose-1, 6-Bisphosphate Aldolase: Structural Analysis Of Reaction Intermediates
Biochemistry V. 44 4222 2005
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: FRUCTOSE-1,6-DIPHOSPHATE (FBPa)
1b: FRUCTOSE-1,6-DIPHOSPHATE (FBPb)
1c: FRUCTOSE-1,6-DIPHOSPHATE (FBPc)
1d: FRUCTOSE-1,6-DIPHOSPHATE (FBPd)
1e: FRUCTOSE-1,6-DIPHOSPHATE (FBPe)
1f: FRUCTOSE-1,6-DIPHOSPHATE (FBPf)
1g: FRUCTOSE-1,6-DIPHOSPHATE (FBPg)
1h: FRUCTOSE-1,6-DIPHOSPHATE (FBPh)
1i: FRUCTOSE-1,6-DIPHOSPHATE (FBPi)
1j: FRUCTOSE-1,6-DIPHOSPHATE (FBPj)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FBP
5
Ligand/Ion
FRUCTOSE-1,6-DIPHOSPHATE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:22 , ASP A:24 , HIS A:25 , GLU A:28 , HIS A:29 , ARG A:148 , LYS A:177 , LYS A:179 , SER A:202 , GLY A:203 , GLY A:204 , ALA A:229 , VAL A:230 , GLY A:231 , ARG A:232 , HOH A:2114 , HOH A:2116 , HOH A:2139
BINDING SITE FOR RESIDUE FBP A 270
2
AC2
SOFTWARE
ASP B:24 , HIS B:25 , GLU B:28 , HIS B:29 , ARG B:148 , LYS B:177 , LYS B:179 , SER B:202 , GLY B:203 , GLY B:204 , ALA B:229 , VAL B:230 , GLY B:231 , ARG B:232 , HOH B:2123 , HOH B:2151 , HOH B:2152 , HOH B:2153 , HOH B:2154
BINDING SITE FOR RESIDUE FBP B 270
3
AC3
SOFTWARE
ASP C:24 , HIS C:25 , GLU C:28 , HIS C:29 , ARG C:148 , LYS C:177 , LYS C:179 , SER C:202 , GLY C:203 , GLY C:204 , ALA C:229 , VAL C:230 , GLY C:231 , ARG C:232 , HOH C:2056 , HOH C:2108 , HOH C:2118 , HOH C:2119
BINDING SITE FOR RESIDUE FBP C 270
4
AC4
SOFTWARE
ALA D:22 , ASP D:24 , HIS D:25 , GLU D:28 , HIS D:29 , ARG D:148 , LYS D:177 , LYS D:179 , SER D:202 , GLY D:203 , GLY D:204 , VAL D:230 , GLY D:231 , ARG D:232 , HOH D:2096 , HOH D:2109 , HOH D:2110 , HOH D:2111
BINDING SITE FOR RESIDUE FBP D 270
5
AC5
SOFTWARE
ALA E:22 , ASP E:24 , HIS E:25 , GLU E:28 , HIS E:29 , ARG E:148 , LYS E:177 , LYS E:179 , SER E:202 , GLY E:203 , GLY E:204 , ALA E:229 , VAL E:230 , GLY E:231 , ARG E:232 , HOH E:2010 , HOH E:2121 , HOH E:2133 , HOH E:2134 , HOH E:2135
BINDING SITE FOR RESIDUE FBP E 270
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 10)
Info
All SCOP Domains
1a: SCOP_d1w8sa1 (A:3-252)
2a: SCOP_d1w8sb_ (B:)
2b: SCOP_d1w8sc_ (C:)
2c: SCOP_d1w8sd_ (D:)
2d: SCOP_d1w8se_ (E:)
2e: SCOP_d1w8sf_ (F:)
2f: SCOP_d1w8sg_ (G:)
2g: SCOP_d1w8sh_ (H:)
2h: SCOP_d1w8si_ (I:)
2i: SCOP_d1w8sj_ (J:)
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(
)
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(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
Archaeal fructose 1,6-bisphosphate aldolase
(5)
Thermoproteus tenax [TaxId: 2271]
(5)
1a
d1w8sa1
A:3-252
Protein domain
:
automated matches
(54)
Thermoproteus tenax [TaxId: 2271]
(1)
2a
d1w8sb_
B:
2b
d1w8sc_
C:
2c
d1w8sd_
D:
2d
d1w8se_
E:
2e
d1w8sf_
F:
2f
d1w8sg_
G:
2g
d1w8sh_
H:
2h
d1w8si_
I:
2i
d1w8sj_
J:
[
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1w8sE00 (E:3-254)
1b: CATH_1w8sA00 (A:3-252)
1c: CATH_1w8sB00 (B:3-252)
1d: CATH_1w8sC00 (C:3-252)
1e: CATH_1w8sD00 (D:3-252)
1f: CATH_1w8sF00 (F:3-252)
1g: CATH_1w8sG00 (G:3-252)
1h: CATH_1w8sH00 (H:3-252)
1i: CATH_1w8sI00 (I:3-252)
1j: CATH_1w8sJ00 (J:3-252)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Thermoproteus tenax. Organism_taxid: 2271.
(6)
1a
1w8sE00
E:3-254
1b
1w8sA00
A:3-252
1c
1w8sB00
B:3-252
1d
1w8sC00
C:3-252
1e
1w8sD00
D:3-252
1f
1w8sF00
F:3-252
1g
1w8sG00
G:3-252
1h
1w8sH00
H:3-252
1i
1w8sI00
I:3-252
1j
1w8sJ00
J:3-252
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (423 KB)
Header - Asym.Unit
Biol.Unit 1 (211 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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