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(-) Description

Title :  CRYSTAL STRUCTURE OF PAE2754 FROM PYROBACULUM AEROPHILUM
 
Authors :  V. L. Arcus, K. Backbro, A. Roos, E. L. Daniel, E. N. Baker
Date :  12 Jan 04  (Deposition) - 10 Feb 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Keywords :  Pin-Domain, Tetramer, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. L. Arcus, K. Backbro, A. Roos, E. L. Daniel, E. N. Baker
Distant Structural Homology Leads To The Functional Characterization Of An Archaeal Pin Domain As An Exonuclease
J. Biol. Chem. V. 279 16471 2004
PubMed-ID: 14734548  |  Reference-DOI: 10.1074/JBC.M313833200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PAE2754
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PPROEX
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PAE2754
    Mutation: YES
    Organism Scientific: PYROBACULUM AEROPHILUM
    Organism Taxid: 13773

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCD        
Biological Unit 2 (1x):     EFGH    
Biological Unit 3 (1x):         IJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1CL6Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG G:48BINDING SITE FOR RESIDUE CL E 1001
2AC2SOFTWAREARG A:48BINDING SITE FOR RESIDUE CL A 1002
3AC3SOFTWAREARG K:48BINDING SITE FOR RESIDUE CL K 1003
4AC4SOFTWAREARG C:48 , GLY D:87BINDING SITE FOR RESIDUE CL D 1004
5AC5SOFTWAREARG H:48BINDING SITE FOR RESIDUE CL H 1005
6AC6SOFTWAREGLY K:87 , ARG L:48BINDING SITE FOR RESIDUE CL K 1006

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1V8P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1V8P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1V8P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1V8P)

(-) Exons   (0, 0)

(no "Exon" information available for 1V8P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  
          VAPC9_PYRAE     2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8pa_ A: Hypothetical protein PAE2754                                                                                              SCOP domains
               CATH domains 1v8pA00 A:2-133 5'-nuclease                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeehhhhhhhhh.hhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8p A   2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  


Chain B from PDB  Type:PROTEIN  Length:133
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
          VAPC9_PYRAE     1 MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8pb_ B: Hypothetical protein PAE2754                                                                                               SCOP domains
               CATH domains 1v8pB00 B:1-133 5'-nuclease                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeehhhhhhhhh.hhhhhh.hhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eee..hhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8p B   1 MAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   


Chain C from PDB  Type:PROTEIN  Length:135
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:135
                              1                                                                                                                                    
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128     
          VAPC9_PYRAE     - --MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8pc_ C: Hypothetical protein PAE2754                                                                                                 SCOP domains
               CATH domains 1v8pC00 C:1-133 5'-nuclease                                                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeehhhhhhhhh.hhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eee..hhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8p C   1 GAMAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                             ||      8        18        28        38        48        58        68        78        88        98       108       118       128     
                            1A|                                                                                                                                    
                             1B                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:133
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
          VAPC9_PYRAE     1 MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8pd_ D: Hypothetical protein PAE2754                                                                                               SCOP domains
               CATH domains 1v8pD00 D:1-133 5'-nuclease                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeehhhhhhhhh.hhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8p D   1 MAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   


Chain E from PDB  Type:PROTEIN  Length:132
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  
          VAPC9_PYRAE     2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8pe_ E: Hypothetical protein PAE2754                                                                                              SCOP domains
               CATH domains 1v8pE00 E:2-133 5'-nuclease                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeehhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eee..hhhhhhhh....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8p E   2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  


Chain F from PDB  Type:PROTEIN  Length:144
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:144
                                       1                                                                                                                                    
                                     - |       9        19        29        39        49        59        69        79        89        99       109       119       129    
          VAPC9_PYRAE     - -----------MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8pf_ F: Hypothetical protein PAE2754                                                                                                          SCOP domains
               CATH domains 1v8pF00 F:-10-133 5'-nuclease                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............eeehhhhhhhhh.hhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8p F -10 PTTENLYFQGAMAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    -1         9        19        29        39        49        59        69        79        89        99       109       119       129    


Chain G from PDB  Type:PROTEIN  Length:133
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
          VAPC9_PYRAE     1 MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8pg_ G: Hypothetical protein PAE2754                                                                                               SCOP domains
               CATH domains 1v8pG00 G:1-133 5'-nuclease                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeehhhhhhhhh.hhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8p G   1 MAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   


Chain H from PDB  Type:PROTEIN  Length:132
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  
          VAPC9_PYRAE     2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8ph_ H: Hypothetical protein PAE2754                                                                                              SCOP domains
               CATH domains 1v8pH00 H:2-133 5'-nuclease                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeehhhhhhhhh.hhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8p H   2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  


Chain I from PDB  Type:PROTEIN  Length:132
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  
          VAPC9_PYRAE     2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8pi_ I: Hypothetical protein PAE2754                                                                                              SCOP domains
               CATH domains 1v8pI00 I:2-133 5'-nuclease                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeehhhhhhhhh.hhhhhhhhhh.eeeehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhheee...hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eee..hhhhhhhh....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8p I   2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  


Chain J from PDB  Type:PROTEIN  Length:132
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  
          VAPC9_PYRAE     2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8pj_ J: Hypothetical protein PAE2754                                                                                              SCOP domains
               CATH domains 1v8pJ00 J:2-133 5'-nuclease                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeehhhhhhhhh.hhhhhh.hhh.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eee..hhhhhhh.....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8p J   2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  


Chain K from PDB  Type:PROTEIN  Length:132
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  
          VAPC9_PYRAE     2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8pk_ K: Hypothetical protein PAE2754                                                                                              SCOP domains
               CATH domains 1v8pK00 K:2-133 5'-nuclease                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeehhhhhhhhh.hhhhhh.....eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh...hhhhhhhhhhhh..eee..hhhhhh......hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8p K   2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  


Chain L from PDB  Type:PROTEIN  Length:132
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  
          VAPC9_PYRAE     2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8pl_ L: Hypothetical protein PAE2754                                                                                              SCOP domains
               CATH domains 1v8pL00 L:2-133 5'-nuclease                                                                                                          CATH domains
           Pfam domains (1) ---PIN-1v8pL01 L:5-119                                                                                                -------------- Pfam domains (1)
           Pfam domains (2) ---PIN-1v8pL02 L:5-119                                                                                                -------------- Pfam domains (2)
           Pfam domains (3) ---PIN-1v8pL03 L:5-119                                                                                                -------------- Pfam domains (3)
           Pfam domains (4) ---PIN-1v8pL04 L:5-119                                                                                                -------------- Pfam domains (4)
           Pfam domains (5) ---PIN-1v8pL05 L:5-119                                                                                                -------------- Pfam domains (5)
           Pfam domains (6) ---PIN-1v8pL06 L:5-119                                                                                                -------------- Pfam domains (6)
           Pfam domains (7) ---PIN-1v8pL07 L:5-119                                                                                                -------------- Pfam domains (7)
           Pfam domains (8) ---PIN-1v8pL08 L:5-119                                                                                                -------------- Pfam domains (8)
           Pfam domains (9) ---PIN-1v8pL09 L:5-119                                                                                                -------------- Pfam domains (9)
          Pfam domains (10) ---PIN-1v8pL10 L:5-119                                                                                                -------------- Pfam domains (10)
          Pfam domains (11) ---PIN-1v8pL11 L:5-119                                                                                                -------------- Pfam domains (11)
          Pfam domains (12) ---PIN-1v8pL12 L:5-119                                                                                                -------------- Pfam domains (12)
         Sec.struct. author ...eeehhhhhhhhh.hhhhhhh....eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8p L   2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: 5'-nuclease (19)
(-)
Pyrobaculum aerophilum. Organism_taxid: 13773. (2)
1a1v8pF00F:-10-133
1b1v8pC00C:1-133
1c1v8pK00K:2-133
1d1v8pL00L:2-133
1e1v8pB00B:1-133
1f1v8pD00D:1-133
1g1v8pG00G:1-133
1h1v8pA00A:2-133
1i1v8pE00E:2-133
1j1v8pH00H:2-133
1k1v8pI00I:2-133
1l1v8pJ00J:2-133

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: PIN (27)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (VAPC9_PYRAE | Q8ZUJ3)
molecular function
    GO:0004527    exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
    GO:0004540    ribonuclease activity    Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.
biological process
    GO:0090501    RNA phosphodiester bond hydrolysis    The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        VAPC9_PYRAE | Q8ZUJ3: 1v8o

(-) Related Entries Specified in the PDB File

1v8o CRYSTAL STRUCTURE OF THE SEMET DERIVATIVE OF PAE2754