Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF PAE2754 FROM PYROBACULUM AEROPHILUM
 
Authors :  V. L. Arcus, K. Backbro, A. Roos, E. L. Daniel, E. N. Baker
Date :  12 Jan 04  (Deposition) - 10 Feb 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Pin-Domain, Semet Substituted, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. L. Arcus, K. Backbro, A. Roos, E. L. Daniel, E. N. Baker
Distant Structural Homology Leads To The Functional Characterization Of An Archaeal Pin Domain As An Exonuclease
J. Biol. Chem. V. 279 16471 2004
PubMed-ID: 14734548  |  Reference-DOI: 10.1074/JBC.M313833200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PAE2754
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPPROEX
    Expression System StrainDL41(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GenePAE2754
    MutationYES
    Organism ScientificPYROBACULUM AEROPHILUM
    Organism Taxid13773

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2MSE20Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:48BINDING SITE FOR RESIDUE CL B 1001
2AC2SOFTWAREARG A:48BINDING SITE FOR RESIDUE CL A 1002
3AC3SOFTWAREHOH F:134 , ARG G:48BINDING SITE FOR RESIDUE CL G 1004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1V8O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1V8O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1V8O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1V8O)

(-) Exons   (0, 0)

(no "Exon" information available for 1V8O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  
          VAPC9_PYRAE     2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8oa_ A: Hypothetical protein PAE2754                                                                                              SCOP domains
               CATH domains 1v8oA00 A:2-133 5'-nuclease                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeehhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..ee....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.eee..hhhhhhhh....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8o A   2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    11        21        31        41        51        61   |    71        81        91       101       111       121       131  
                                                                                          65-MSE         80-MSE                                                 

Chain B from PDB  Type:PROTEIN  Length:134
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:134
                             1                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129    
          VAPC9_PYRAE     - -MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8ob_ B: Hypothetical protein PAE2754                                                                                                SCOP domains
               CATH domains 1v8oB00 B:1-133 5'-nuclease                                                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeehhhhhhhhh..hhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8o B   1 AmAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                             |       9        19        29        39        49        59     |  69        79|       89        99       109       119       129    
                            1A-MSE                                                          65-MSE         80-MSE                                                 

Chain C from PDB  Type:PROTEIN  Length:135
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:135
                              1                                                                                                                                    
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128     
          VAPC9_PYRAE     - --MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8oc_ C: Hypothetical protein PAE2754                                                                                                 SCOP domains
               CATH domains 1v8oC00 C:1-133 5'-nuclease                                                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeehhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8o C   1 GAmAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                             ||      8        18        28        38        48        58      | 68        78 |      88        98       108       118       128     
                            1A|                                                              65-MSE         80-MSE                                                 
                             1B-MSE                                                                                                                                

Chain D from PDB  Type:PROTEIN  Length:132
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  
          VAPC9_PYRAE     2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8od_ D: Hypothetical protein PAE2754                                                                                              SCOP domains
               CATH domains 1v8oD00 D:2-133 5'-nuclease                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeehhhhhhhhh.hhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8o D   2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    11        21        31        41        51        61   |    71        81        91       101       111       121       131  
                                                                                          65-MSE         80-MSE                                                 

Chain E from PDB  Type:PROTEIN  Length:132
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  
          VAPC9_PYRAE     2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8oe_ E: Hypothetical protein PAE2754                                                                                              SCOP domains
               CATH domains 1v8oE00 E:2-133 5'-nuclease                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeehhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..ee....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.eee..hhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8o E   2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    11        21        31        41        51        61   |    71        81        91       101       111       121       131  
                                                                                          65-MSE         80-MSE                                                 

Chain F from PDB  Type:PROTEIN  Length:133
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
          VAPC9_PYRAE     1 MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8of_ F: Hypothetical protein PAE2754                                                                                               SCOP domains
               CATH domains -1v8oF00 F:2-133 5'-nuclease                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeehhhhhhhhh..hhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8o F   1 mAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                            |       10        20        30        40        50        60    |   70        80        90       100       110       120       130   
                            1-MSE                                                          65-MSE         80-MSE                                                 

Chain G from PDB  Type:PROTEIN  Length:132
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  
          VAPC9_PYRAE     2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8og_ G: Hypothetical protein PAE2754                                                                                              SCOP domains
               CATH domains 1v8oG00 G:2-133 5'-nuclease                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeehhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v8o G   2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                                    11        21        31        41        51        61   |    71        81        91       101       111       121       131  
                                                                                          65-MSE         80-MSE                                                 

Chain H from PDB  Type:PROTEIN  Length:136
 aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:136
                               1                                                                                                                                    
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127      
          VAPC9_PYRAE     - ---MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
               SCOP domains d1v8oh_ H: Hypothetical protein PAE2754                                                                                                  SCOP domains
               CATH domains 1v8oH00 H:1-133 5'-nuclease                                                                                                              CATH domains
           Pfam domains (1) -------PIN-1v8oH01 H:5-119                                                                                                -------------- Pfam domains (1)
           Pfam domains (2) -------PIN-1v8oH02 H:5-119                                                                                                -------------- Pfam domains (2)
           Pfam domains (3) -------PIN-1v8oH03 H:5-119                                                                                                -------------- Pfam domains (3)
           Pfam domains (4) -------PIN-1v8oH04 H:5-119                                                                                                -------------- Pfam domains (4)
           Pfam domains (5) -------PIN-1v8oH05 H:5-119                                                                                                -------------- Pfam domains (5)
           Pfam domains (6) -------PIN-1v8oH06 H:5-119                                                                                                -------------- Pfam domains (6)
           Pfam domains (7) -------PIN-1v8oH07 H:5-119                                                                                                -------------- Pfam domains (7)
           Pfam domains (8) -------PIN-1v8oH08 H:5-119                                                                                                -------------- Pfam domains (8)
         Sec.struct. author .......eeehhhhhhhhh.hhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhh.....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8o H   1 QGAmAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
                             |||     7        17        27        37        47        57       |67        77  |     87        97       107       117       127      
                            1A||                                                              65-MSE         80-MSE                                                 
                             1B|                                                                                                                                    
                              1C-MSE                                                                                                                                

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: PIN (27)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (VAPC9_PYRAE | Q8ZUJ3)
molecular function
    GO:0004527    exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
    GO:0004540    ribonuclease activity    Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.
biological process
    GO:0090501    RNA phosphodiester bond hydrolysis    The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1v8o)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1v8o
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  VAPC9_PYRAE | Q8ZUJ3
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  VAPC9_PYRAE | Q8ZUJ3
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VAPC9_PYRAE | Q8ZUJ31v8p

(-) Related Entries Specified in the PDB File

1v8p PAE2754 WITH MUTATION P2A