Chain A from PDB Type:PROTEIN Length:132
aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot Length:133
Alignment length:132
11 21 31 41 51 61 71 81 91 101 111 121 131
VAPC9_PYRAE 2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
SCOP domains d1v8oa_ A: Hypothetical protein PAE2754 SCOP domains
CATH domains 1v8oA00 A:2-133 5'-nuclease CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...eeehhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..ee....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.eee..hhhhhhhh....hhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
1v8o A 2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
11 21 31 41 51 61 | 71 81 91 101 111 121 131
65-MSE 80-MSE
Chain B from PDB Type:PROTEIN Length:134
aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot Length:133
Alignment length:134
1
| 9 19 29 39 49 59 69 79 89 99 109 119 129
VAPC9_PYRAE - -MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
SCOP domains d1v8ob_ B: Hypothetical protein PAE2754 SCOP domains
CATH domains 1v8oB00 B:1-133 5'-nuclease CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....eeehhhhhhhhh..hhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
1v8o B 1 AmAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
| 9 19 29 39 49 59 | 69 79| 89 99 109 119 129
1A-MSE 65-MSE 80-MSE
Chain C from PDB Type:PROTEIN Length:135
aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot Length:133
Alignment length:135
1
| 8 18 28 38 48 58 68 78 88 98 108 118 128
VAPC9_PYRAE - --MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
SCOP domains d1v8oc_ C: Hypothetical protein PAE2754 SCOP domains
CATH domains 1v8oC00 C:1-133 5'-nuclease CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......eeehhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
1v8o C 1 GAmAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
|| 8 18 28 38 48 58 | 68 78 | 88 98 108 118 128
1A| 65-MSE 80-MSE
1B-MSE
Chain D from PDB Type:PROTEIN Length:132
aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot Length:133
Alignment length:132
11 21 31 41 51 61 71 81 91 101 111 121 131
VAPC9_PYRAE 2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
SCOP domains d1v8od_ D: Hypothetical protein PAE2754 SCOP domains
CATH domains 1v8oD00 D:2-133 5'-nuclease CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...eeehhhhhhhhh.hhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
1v8o D 2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
11 21 31 41 51 61 | 71 81 91 101 111 121 131
65-MSE 80-MSE
Chain E from PDB Type:PROTEIN Length:132
aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot Length:133
Alignment length:132
11 21 31 41 51 61 71 81 91 101 111 121 131
VAPC9_PYRAE 2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
SCOP domains d1v8oe_ E: Hypothetical protein PAE2754 SCOP domains
CATH domains 1v8oE00 E:2-133 5'-nuclease CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...eeehhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..ee....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.eee..hhhhhhhh....hhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
1v8o E 2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
11 21 31 41 51 61 | 71 81 91 101 111 121 131
65-MSE 80-MSE
Chain F from PDB Type:PROTEIN Length:133
aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot Length:133
Alignment length:133
10 20 30 40 50 60 70 80 90 100 110 120 130
VAPC9_PYRAE 1 MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
SCOP domains d1v8of_ F: Hypothetical protein PAE2754 SCOP domains
CATH domains -1v8oF00 F:2-133 5'-nuclease CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeehhhhhhhhh..hhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
1v8o F 1 mAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
| 10 20 30 40 50 60 | 70 80 90 100 110 120 130
1-MSE 65-MSE 80-MSE
Chain G from PDB Type:PROTEIN Length:132
aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot Length:133
Alignment length:132
11 21 31 41 51 61 71 81 91 101 111 121 131
VAPC9_PYRAE 2 PVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
SCOP domains d1v8og_ G: Hypothetical protein PAE2754 SCOP domains
CATH domains 1v8oG00 G:2-133 5'-nuclease CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...eeehhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhhh....hhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
1v8o G 2 AVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
11 21 31 41 51 61 | 71 81 91 101 111 121 131
65-MSE 80-MSE
Chain H from PDB Type:PROTEIN Length:136
aligned with VAPC9_PYRAE | Q8ZUJ3 from UniProtKB/Swiss-Prot Length:133
Alignment length:136
1
| 7 17 27 37 47 57 67 77 87 97 107 117 127
VAPC9_PYRAE - ---MPVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
SCOP domains d1v8oh_ H: Hypothetical protein PAE2754 SCOP domains
CATH domains 1v8oH00 H:1-133 5'-nuclease CATH domains
Pfam domains (1) -------PIN-1v8oH01 H:5-119 -------------- Pfam domains (1)
Pfam domains (2) -------PIN-1v8oH02 H:5-119 -------------- Pfam domains (2)
Pfam domains (3) -------PIN-1v8oH03 H:5-119 -------------- Pfam domains (3)
Pfam domains (4) -------PIN-1v8oH04 H:5-119 -------------- Pfam domains (4)
Pfam domains (5) -------PIN-1v8oH05 H:5-119 -------------- Pfam domains (5)
Pfam domains (6) -------PIN-1v8oH06 H:5-119 -------------- Pfam domains (6)
Pfam domains (7) -------PIN-1v8oH07 H:5-119 -------------- Pfam domains (7)
Pfam domains (8) -------PIN-1v8oH08 H:5-119 -------------- Pfam domains (8)
Sec.struct. author .......eeehhhhhhhhh.hhhhhhhhhh.eeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..eee..hhhhhhh.....hhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
1v8o H 1 QGAmAVEYLVDASALYALAAHYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVmSSFKVLEDPPLDEVmRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ 133
||| 7 17 27 37 47 57 |67 77 | 87 97 107 117 127
1A|| 65-MSE 80-MSE
1B|
1C-MSE
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |