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1V8P
Asym. Unit
Info
Asym.Unit (264 KB)
Biol.Unit 1 (87 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PAE2754 FROM PYROBACULUM AEROPHILUM
Authors
:
V. L. Arcus, K. Backbro, A. Roos, E. L. Daniel, E. N. Baker
Date
:
12 Jan 04 (Deposition) - 10 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.52
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Keywords
:
Pin-Domain, Tetramer, Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. L. Arcus, K. Backbro, A. Roos, E. L. Daniel, E. N. Baker
Distant Structural Homology Leads To The Functional Characterization Of An Archaeal Pin Domain As An Exonuclease
J. Biol. Chem. V. 279 16471 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG G:48
BINDING SITE FOR RESIDUE CL E 1001
2
AC2
SOFTWARE
ARG A:48
BINDING SITE FOR RESIDUE CL A 1002
3
AC3
SOFTWARE
ARG K:48
BINDING SITE FOR RESIDUE CL K 1003
4
AC4
SOFTWARE
ARG C:48 , GLY D:87
BINDING SITE FOR RESIDUE CL D 1004
5
AC5
SOFTWARE
ARG H:48
BINDING SITE FOR RESIDUE CL H 1005
6
AC6
SOFTWARE
GLY K:87 , ARG L:48
BINDING SITE FOR RESIDUE CL K 1006
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1v8pa_ (A:)
1b: SCOP_d1v8pb_ (B:)
1c: SCOP_d1v8pk_ (K:)
1d: SCOP_d1v8pl_ (L:)
1e: SCOP_d1v8pc_ (C:)
1f: SCOP_d1v8pd_ (D:)
1g: SCOP_d1v8pe_ (E:)
1h: SCOP_d1v8pf_ (F:)
1i: SCOP_d1v8pg_ (G:)
1j: SCOP_d1v8ph_ (H:)
1k: SCOP_d1v8pi_ (I:)
1l: SCOP_d1v8pj_ (J:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PIN domain-like
(32)
Superfamily
:
PIN domain-like
(32)
Family
:
PIN domain
(11)
Protein domain
:
Hypothetical protein PAE2754
(2)
Pyrobaculum aerophilum [TaxId: 13773]
(2)
1a
d1v8pa_
A:
1b
d1v8pb_
B:
1c
d1v8pk_
K:
1d
d1v8pl_
L:
1e
d1v8pc_
C:
1f
d1v8pd_
D:
1g
d1v8pe_
E:
1h
d1v8pf_
F:
1i
d1v8pg_
G:
1j
d1v8ph_
H:
1k
d1v8pi_
I:
1l
d1v8pj_
J:
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1v8pF00 (F:-10-133)
1b: CATH_1v8pC00 (C:1-133)
1c: CATH_1v8pK00 (K:2-133)
1d: CATH_1v8pL00 (L:2-133)
1e: CATH_1v8pB00 (B:1-133)
1f: CATH_1v8pD00 (D:1-133)
1g: CATH_1v8pG00 (G:1-133)
1h: CATH_1v8pA00 (A:2-133)
1i: CATH_1v8pE00 (E:2-133)
1j: CATH_1v8pH00 (H:2-133)
1k: CATH_1v8pI00 (I:2-133)
1l: CATH_1v8pJ00 (J:2-133)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
5'-nuclease
(19)
Pyrobaculum aerophilum. Organism_taxid: 13773.
(2)
1a
1v8pF00
F:-10-133
1b
1v8pC00
C:1-133
1c
1v8pK00
K:2-133
1d
1v8pL00
L:2-133
1e
1v8pB00
B:1-133
1f
1v8pD00
D:1-133
1g
1v8pG00
G:1-133
1h
1v8pA00
A:2-133
1i
1v8pE00
E:2-133
1j
1v8pH00
H:2-133
1k
1v8pI00
I:2-133
1l
1v8pJ00
J:2-133
[
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_PIN_1v8pL01 (L:5-119)
1b: PFAM_PIN_1v8pL02 (L:5-119)
1c: PFAM_PIN_1v8pL03 (L:5-119)
1d: PFAM_PIN_1v8pL04 (L:5-119)
1e: PFAM_PIN_1v8pL05 (L:5-119)
1f: PFAM_PIN_1v8pL06 (L:5-119)
1g: PFAM_PIN_1v8pL07 (L:5-119)
1h: PFAM_PIN_1v8pL08 (L:5-119)
1i: PFAM_PIN_1v8pL09 (L:5-119)
1j: PFAM_PIN_1v8pL10 (L:5-119)
1k: PFAM_PIN_1v8pL11 (L:5-119)
1l: PFAM_PIN_1v8pL12 (L:5-119)
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)
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)
(
)
Clan
:
PIN
(27)
Family
:
PIN
(7)
Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
(2)
1a
PIN-1v8pL01
L:5-119
1b
PIN-1v8pL02
L:5-119
1c
PIN-1v8pL03
L:5-119
1d
PIN-1v8pL04
L:5-119
1e
PIN-1v8pL05
L:5-119
1f
PIN-1v8pL06
L:5-119
1g
PIN-1v8pL07
L:5-119
1h
PIN-1v8pL08
L:5-119
1i
PIN-1v8pL09
L:5-119
1j
PIN-1v8pL10
L:5-119
1k
PIN-1v8pL11
L:5-119
1l
PIN-1v8pL12
L:5-119
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (264 KB)
Header - Asym.Unit
Biol.Unit 1 (87 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Biol.Unit 3 (87 KB)
Header - Biol.Unit 3
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