1UZ3 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF NOVEL PROTEIN EMSY

Authors :   G. B. Chavali, B. P. Basu, A. J. Doherty

Date :   03 Mar 04 (Deposition) - 13 Oct 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.10

Chains :   Asym./Biol. Unit : A,B

Keywords :   Chromatin Regulator, Chromatin Regulators, Royal Family Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. B. Chavali, C. M. Ekblad, B. P. Basu, N. C. Brissett, D. Veprintsev, L. Hughes-Davies, T. Kouzarides, L. S. Itzhaki, A. J. Doherty
Crystal Structure Of The Ent Domain Of Human Emsy.
J. Mol. Biol. V. 350 964 2005
PubMed-ID: 15978617 | Reference-DOI: 10.1016/J.JMB.2005.05.047

Molecule 1 - EMSY PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 1-100
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1UZ3)

(no "Site" information available for 1UZ3)

(no "SS Bond" information available for 1UZ3)

(no "Cis Peptide Bond" information available for 1UZ3)

(no "SAP(SNP)/Variant" information available for 1UZ3)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ENT	PS51138	EMSY N-terminal (ENT) domain profile.	EMSY_HUMAN	16-100	2	A:18-102 B:18-100

Asymmetric/Biological Unit (4, 8)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1c	ENST00000334736	1c	ENSE00001386178	chr11:76156069-76156172	104	EMSY_HUMAN	-	0	0	-	-
1.2a	ENST00000334736	2a	ENSE00002183521	chr11:76157944-76158052	109	EMSY_HUMAN	1-24	24	2	A:3-26 B:4-26	24 23
1.3	ENST00000334736	3	ENSE00001223548	chr11:76162902-76163001	100	EMSY_HUMAN	24-57	34	2	A:26-59 B:26-59	34 34
1.4a	ENST00000334736	4a	ENSE00002152029	chr11:76164358-76164432	75	EMSY_HUMAN	57-82	26	2	A:59-84 B:59-84	26 26
1.6b	ENST00000334736	6b	ENSE00001696572	chr11:76169227-76169402	176	EMSY_HUMAN	82-141	60	2	A:84-102 B:84-100	19 17
1.6e	ENST00000334736	6e	ENSE00001102458	chr11:76170980-76171129	150	EMSY_HUMAN	141-191	51	0	-	-
1.7	ENST00000334736	7	ENSE00001697568	chr11:76174865-76175124	260	EMSY_HUMAN	191-277	87	0	-	-
1.8	ENST00000334736	8	ENSE00001718146	chr11:76183608-76183884	277	EMSY_HUMAN	278-370	93	0	-	-
1.9a	ENST00000334736	9a	ENSE00001152940	chr11:76207259-76207513	255	EMSY_HUMAN	370-455	86	0	-	-
1.10a	ENST00000334736	10a	ENSE00001102425	chr11:76224430-76224579	150	EMSY_HUMAN	455-505	51	0	-	-
1.11b	ENST00000334736	11b	ENSE00001102392	chr11:76227186-76227356	171	EMSY_HUMAN	505-562	58	0	-	-
1.12	ENST00000334736	12	ENSE00001102435	chr11:76234199-76234335	137	EMSY_HUMAN	562-607	46	0	-	-
1.13a	ENST00000334736	13a	ENSE00001102384	chr11:76237506-76237679	174	EMSY_HUMAN	608-665	58	0	-	-
1.14	ENST00000334736	14	ENSE00001102400	chr11:76239312-76239510	199	EMSY_HUMAN	666-732	67	0	-	-
1.15	ENST00000334736	15	ENSE00001152902	chr11:76246939-76247103	165	EMSY_HUMAN	732-787	56	0	-	-
1.16	ENST00000334736	16	ENSE00001102418	chr11:76248839-76248994	156	EMSY_HUMAN	787-839	53	0	-	-
1.17	ENST00000334736	17	ENSE00001152894	chr11:76250643-76250684	42	EMSY_HUMAN	839-853	15	0	-	-
1.18c	ENST00000334736	18c	ENSE00001152887	chr11:76253260-76253411	152	EMSY_HUMAN	853-903	51	0	-	-
1.19c	ENST00000334736	19c	ENSE00001040003	chr11:76255303-76255866	564	EMSY_HUMAN	904-1091	188	0	-	-
1.20a	ENST00000334736	20a	ENSE00001040001	chr11:76256841-76257341	501	EMSY_HUMAN	1092-1258	167	0	-	-
1.22f	ENST00000334736	22f	ENSE00001403769	chr11:76260996-76262586	1591	EMSY_HUMAN	1259-1322	64	0	-	-

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:102
 aligned with EMSY_HUMAN | Q7Z589 from UniProtKB/Swiss-Prot  Length:1322

    Alignment length:102
                              1                                                                                                   
                              |      8        18        28        38        48        58        68        78        88        98  
           EMSY_HUMAN     - --MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLV 100
               SCOP domains d1uz3a_ A: automated matches                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------ENT  PDB: A:18-102 UniProt: 16-100                                                    PROSITE
           Transcript 1 (1) --Exon 1.2a  PDB: A:3-26  --------------------------------Exon 1.4a  PDB: A:59-84   ------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.3  PDB: A:26-59            ------------------------Exon 1.6b           Transcript 1 (2)
                 1uz3 A   1 GSMPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLV 102
                                    10        20        30        40        50        60        70        80        90       100

Chain B from PDB  Type:PROTEIN  Length:97
 aligned with EMSY_HUMAN | Q7Z589 from UniProtKB/Swiss-Prot  Length:1322

    Alignment length:97
                                    11        21        31        41        51        61        71        81        91       
           EMSY_HUMAN     2 PVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRR  98
               SCOP domains d1uz3b_ B: automated matches                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------ENT-1uz3B01 B:18-90                                                      ---------- Pfam domains (1)
           Pfam domains (2) --------------ENT-1uz3B02 B:18-90                                                      ---------- Pfam domains (2)
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------ENT  PDB: B:18-100 UniProt: 16-100                                                  PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: B:4-26 --------------------------------Exon 1.4a  PDB: B:59-84   ---------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------Exon 1.3  PDB: B:26-59            ------------------------Exon 1.6b         Transcript 1 (2)
                 1uz3 B   4 PVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRR 100
                                    13        23        33        43        53        63        73        83        93

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: ENT-like (3)

Superfamily: ENT-like (3)

Family: Emsy N terminal (ENT) domain-like (3)

Protein domain: automated matches (1)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d1uz3a_	A:
1b	d1uz3b_	B:

(no "CATH Domain" information available for 1UZ3)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: ENT] (2)

Family: ENT (2)

Homo sapiens (Human) (2)

1a	ENT-1uz3B01	B:18-90
1b	ENT-1uz3B02	B:18-90

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (EMSY_HUMAN | Q7Z589)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006281	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Asymmetric/Biological Unit
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	1uz3
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	EMSY_HUMAN \| Q7Z589	:	1utu 2fmm

1utu	CRYSTAL STRUCTURE OF NOVEL PROTEIN EMSY TRUNCATE

Description

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