1UPT - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF A COMPLEX OF THE GOLGIN-245 GRIP DOMAIN WITH ARL1

Authors :   B. Panic, O. Perisic, D. B. Veprintsev, R. L. Williams, S. Munro

Date :   12 Oct 03 (Deposition) - 30 Oct 03 (Release) - 05 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)

Keywords :   Hydrolase/Protein-Binding, Complex (Gtpase-Golgin), Golgin-245, Grip, Arl1, Golgin, Gtpase, G-Protein, Golgi, Grip Dimer, Protein Sorting, Vesicle Trafficking, Hydrolase-Protein-Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Panic, O. Perisic, D. B. Veprintsev, R. L. Williams, S. Munro
Structural Basis For Arl1-Dependent Targeting Of Homodimeri Grip Domains To The Golgi Apparatus
Mol. Cell V. 12 863 2003
PubMed-ID: 14580338 | Reference-DOI: 10.1016/S1097-2765(03)00356-3

Molecule 1 - ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1
	Chains	:	A, C, E, G
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	POPCG
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 15-181
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ARL1

Molecule 2 - GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A MEMBER 4
	Chains	:	B, D, F, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	POPCG
	Expression System Taxid	:	562
	Fragment	:	GRIP DOMAIN RESIDUES 2170-2228
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	TRANS-GOLGI P230,GOLGIN-245,72.1 PROTEIN, 256 KDA GOLGIN

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 50)

No.	Name	Count	Type	Full Name
1	GTP	4	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
2	MG	4	Ligand/Ion	MAGNESIUM ION
3	MSE	42	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 23)

No.	Name	Count	Type	Full Name
1	GTP	2	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	21	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 23)

No.	Name	Count	Type	Full Name
1	GTP	2	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	21	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:31 , THR A:48 , GTP A:1182 , HOH A:2003 , HOH A:2007	BINDING SITE FOR RESIDUE MG A1183
2	AC2	SOFTWARE	THR C:31 , THR C:48 , GTP C:1181 , HOH C:2013 , HOH C:2032	BINDING SITE FOR RESIDUE MG C1182
3	AC3	SOFTWARE	THR E:31 , THR E:48 , GTP E:1181 , HOH E:2032 , HOH E:2093	BINDING SITE FOR RESIDUE MG E1182
4	AC4	SOFTWARE	THR G:31 , THR G:48 , GTP G:1181 , HOH G:2005 , HOH G:2053	BINDING SITE FOR RESIDUE MG G1182
5	AC5	SOFTWARE	ASP A:26 , GLY A:27 , ALA A:28 , GLY A:29 , LYS A:30 , THR A:31 , THR A:32 , THR A:45 , THR A:48 , GLY A:70 , ASN A:126 , LYS A:127 , ASP A:129 , MSE A:130 , SER A:159 , ALA A:160 , THR A:161 , MG A:1183 , HOH A:2003 , HOH A:2007 , HOH A:2048 , HOH A:2050	BINDING SITE FOR RESIDUE GTP A1182
6	AC6	SOFTWARE	ASP C:26 , GLY C:27 , ALA C:28 , GLY C:29 , LYS C:30 , THR C:31 , THR C:32 , THR C:45 , THR C:48 , GLY C:70 , ASN C:126 , LYS C:127 , ASP C:129 , MSE C:130 , SER C:159 , ALA C:160 , THR C:161 , MG C:1182 , HOH C:2008 , HOH C:2013 , HOH C:2031 , HOH C:2032 , HOH C:2033 , HOH C:2034	BINDING SITE FOR RESIDUE GTP C1181
7	AC7	SOFTWARE	ASP E:26 , GLY E:27 , ALA E:28 , GLY E:29 , LYS E:30 , THR E:31 , THR E:32 , THR E:45 , THR E:48 , GLY E:69 , GLY E:70 , ASN E:126 , LYS E:127 , ASP E:129 , SER E:159 , ALA E:160 , THR E:161 , MG E:1182 , HOH E:2012 , HOH E:2032 , HOH E:2092 , HOH E:2093 , HOH E:2094 , HOH E:2095 , HOH E:2096	BINDING SITE FOR RESIDUE GTP E1181
8	AC8	SOFTWARE	ASP G:26 , GLY G:27 , ALA G:28 , GLY G:29 , LYS G:30 , THR G:31 , THR G:32 , THR G:45 , THR G:48 , GLY G:70 , ASN G:126 , LYS G:127 , ASP G:129 , MSE G:130 , SER G:159 , ALA G:160 , THR G:161 , MG G:1182 , HOH G:2005 , HOH G:2011 , HOH G:2052 , HOH G:2053 , HOH G:2054	BINDING SITE FOR RESIDUE GTP G1181

(no "SS Bond" information available for 1UPT)

(no "Cis Peptide Bond" information available for 1UPT)

(no "SAP(SNP)/Variant" information available for 1UPT)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARF	PS51417	small GTPase Arf family profile.	ARL1_HUMAN	11-177	1	G:15-177

Biological Unit 1 (, 0)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARF	PS51417	small GTPase Arf family profile.	ARL1_HUMAN	11-177	0	-

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARF	PS51417	small GTPase Arf family profile.	ARL1_HUMAN	11-177	1	G:15-177

Asymmetric Unit (8, 30)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000261636	1	ENSE00001391106	chr12:101801572-101801420	153	ARL1_HUMAN	1-2	2	0	-	-
1.2	ENST00000261636	2	ENSE00001100897	chr12:101799759-101799622	138	ARL1_HUMAN	2-48	47	4	A:13-48 C:18-48 E:13-48 G:11-48 (gaps)	36 31 36 47
1.3	ENST00000261636	3	ENSE00001000471	chr12:101796724-101796643	82	ARL1_HUMAN	48-75	28	4	A:48-75 C:48-75 E:48-75 G:48-75	28 28 28 28
1.4	ENST00000261636	4	ENSE00001000472	chr12:101794951-101794840	112	ARL1_HUMAN	75-112	38	4	A:75-112 C:75-112 E:75-112 G:75-112	38 38 38 38
1.5	ENST00000261636	5	ENSE00001216814	chr12:101790355-101790177	179	ARL1_HUMAN	113-172	60	4	A:113-172 C:113-172 E:113-172 G:113-172	60 60 60 60
1.6	ENST00000261636	6	ENSE00001476583	chr12:101789448-101786923	2526	ARL1_HUMAN	172-181	10	4	A:172-181 C:172-180 E:172-180 G:172-180	10 9 9 9

2.1a	ENST00000361924	1a	ENSE00001954251	chr3:37284668-37285113	446	GOGA4_HUMAN	1-24	24	0	-	-
2.4b	ENST00000361924	4b	ENSE00001251040	chr3:37292886-37292975	90	GOGA4_HUMAN	25-54	30	0	-	-
2.7b	ENST00000361924	7b	ENSE00001251031	chr3:37323449-37323763	315	GOGA4_HUMAN	55-159	105	0	-	-
2.8	ENST00000361924	8	ENSE00001251023	chr3:37327505-37327552	48	GOGA4_HUMAN	160-175	16	0	-	-
2.10a	ENST00000361924	10a	ENSE00001251016	chr3:37330726-37330782	57	GOGA4_HUMAN	176-194	19	0	-	-
2.11a	ENST00000361924	11a	ENSE00001800584	chr3:37336470-37336568	99	GOGA4_HUMAN	195-227	33	0	-	-
2.12	ENST00000361924	12	ENSE00001663626	chr3:37337578-37337710	133	GOGA4_HUMAN	228-272	45	0	-	-
2.13	ENST00000361924	13	ENSE00001714886	chr3:37340324-37340511	188	GOGA4_HUMAN	272-334	63	0	-	-
2.14	ENST00000361924	14	ENSE00001790783	chr3:37340779-37340862	84	GOGA4_HUMAN	335-362	28	0	-	-
2.15	ENST00000361924	15	ENSE00001758865	chr3:37343676-37343823	148	GOGA4_HUMAN	363-412	50	0	-	-
2.17b	ENST00000361924	17b	ENSE00001690632	chr3:37356911-37357089	179	GOGA4_HUMAN	412-471	60	0	-	-
2.18a	ENST00000361924	18a	ENSE00001138663	chr3:37360554-37360685	132	GOGA4_HUMAN	472-515	44	0	-	-
2.19b	ENST00000361924	19b	ENSE00001138651	chr3:37363222-37363377	156	GOGA4_HUMAN	516-567	52	0	-	-
2.20c	ENST00000361924	20c	ENSE00001303935	chr3:37365079-37369316	4238	GOGA4_HUMAN	568-1980	1413	0	-	-
2.21	ENST00000361924	21	ENSE00001250910	chr3:37369907-37370028	122	GOGA4_HUMAN	1980-2021	42	0	-	-
2.22a	ENST00000361924	22a	ENSE00001250902	chr3:37370454-37370584	131	GOGA4_HUMAN	2021-2064	44	0	-	-
2.23	ENST00000361924	23	ENSE00001296324	chr3:37376544-37376657	114	GOGA4_HUMAN	2065-2102	38	0	-	-
2.24	ENST00000361924	24	ENSE00001296753	chr3:37378634-37378654	21	GOGA4_HUMAN	2103-2109	7	0	-	-
2.25	ENST00000361924	25	ENSE00001315030	chr3:37379157-37379225	69	GOGA4_HUMAN	2110-2132	23	0	-	-
2.26	ENST00000361924	26	ENSE00001296621	chr3:37381615-37381690	76	GOGA4_HUMAN	2133-2158	26	0	-	-
2.27	ENST00000361924	27	ENSE00001316090	chr3:37388684-37388787	104	GOGA4_HUMAN	2158-2192	35	4	B:2171-2192 D:2170-2192 F:2171-2192 H:2170-2192	22 23 22 23
2.28	ENST00000361924	28	ENSE00001298280	chr3:37396592-37396678	87	GOGA4_HUMAN	2193-2221	29	4	B:2193-2221 D:2193-2221 F:2193-2221 H:2193-2220	29 29 29 28
2.29b	ENST00000361924	29b	ENSE00001435056	chr3:37402734-37402796	63	GOGA4_HUMAN	2222-2230	9	2	B:2222-2228 - F:2222-2226 -	7 - 5 -
2.30d	ENST00000361924	30d	ENSE00001673232	chr3:37407571-37408242	672	GOGA4_HUMAN	-	0	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:169
 aligned with ARL1_HUMAN | P40616 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:169
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172         
          ARL1_HUMAN     13 FGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ  181
               SCOP domains d1upta_ A: ADP-ribosylation factor                                                                                                                                        SCOP domains
               CATH domains 1uptA00 A:13-181 P-loop containing nucleotide triphosphate hydrolases                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.....hhhhhhhhhhhh..........eeeeeeee..eeeeeeee..hhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ARF  PDB: - UniProt: 11-177                                                                                                                                          ---- PROSITE
           Transcript 1 (1) -----------------------------------Exon 1.3  PDB: A:48-75      -------------------------------------Exon 1.5  PDB: A:113-172 UniProt: 113-172                   --------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.2  PDB: A:13-48 UniProt: 2-48--------------------------Exon 1.4  PDB: A:75-112               -----------------------------------------------------------Exon 1.6   Transcript 1 (2)
                1upt A   13 HmTREmRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAmLEEEELRKAILVVFANKQDmEQAmTSSEmANSLGLPALKDRKWQIFKTSATKGTGLDEAmEWLVETLKSRQ  181
                             |   |  22        32        42        52        62        72        82        92       102       112       122       132 |    |142       152       162       172         
                             |   |                                                                                         110-MSE             130-MSE    |                            170-MSE       
                            14-MSE                                                                                                                 134-MSE|                                          
                                18-MSE                                                                                                                  139-MSE

Chain B from PDB  Type:PROTEIN  Length:58
 aligned with GOGA4_HUMAN | Q13439 from UniProtKB/Swiss-Prot  Length:2230

    Alignment length:59
                                  2180      2190      2200      2210      2220         
         GOGA4_HUMAN   2171 EPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLMFTSPRSGI 2229
               SCOP domains d1uptb_ B: Golgi autoantigen, golgin-245                    SCOP domains
               CATH domains 1uptB00 B:2171-2228 GRIP domain                             CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh-hhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.27 [INCOMPLETE]Exon 2.28  PDB: B:2193-2221  2.29b    Transcript 2
                1upt B 2171 EPTEFEYLRKVLFEYmmGRETKTmAKVITTVLKFPDDQTQKILEREDARLm-SWLRSSS 2228
                                  2180     |2190   |  2200      2210      2220| |      
                                        2186-MSE   |                       2221-MSE    
                                         2187-MSE  |                         2222      
                                                2194-MSE

Chain C from PDB  Type:PROTEIN  Length:163
 aligned with ARL1_HUMAN | P40616 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:163
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177   
          ARL1_HUMAN     18 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  180
               SCOP domains d1uptc_ C: ADP-ribosylation factor                                                                                                                                  SCOP domains
               CATH domains -1uptC00 C:19-180 P-loop containing nucleotide triphosphate hydrolases                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhh..........eeeeeee....eeeeeee.....hhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhh.........eeeee.......hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ARF  PDB: - UniProt: 11-177                                                                                                                                     --- PROSITE
           Transcript 1 (1) ------------------------------Exon 1.3  PDB: C:48-75      -------------------------------------Exon 1.5  PDB: C:113-172 UniProt: 113-172                   -------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.2  PDB: C:18-48         --------------------------Exon 1.4  PDB: C:75-112               -----------------------------------------------------------Exon 1.6  Transcript 1 (2)
                1upt C   18 mRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAmLEEEELRKAILVVFANKQDmEQAmTSSEmANSLGLPALKDRKWQIFKTSATKGTGLDEAmEWLVETLKSR  180
                            |       27        37        47        57        67        77        87        97       107  |    117       127  |   |137 |     147       157       167  |    177   
                           18-MSE                                                                                     110-MSE             130-MSE    |                            170-MSE      
                                                                                                                                              134-MSE|                                         
                                                                                                                                                   139-MSE

Chain D from PDB  Type:PROTEIN  Length:52
 aligned with GOGA4_HUMAN | Q13439 from UniProtKB/Swiss-Prot  Length:2230

    Alignment length:52
                                  2179      2189      2199      2209      2219  
         GOGA4_HUMAN   2170 GEPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLM 2221
               SCOP domains d1uptd_ D: Golgi autoantigen, golgin-245             SCOP domains
               CATH domains 1uptD00 D:2170-2220 GRIP domain                    - CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
               Transcript 2 Exon 2.27 [INCOMPLETE] Exon 2.28  PDB: D:2193-2221   Transcript 2
                1upt D 2170 GEPTEFEYLRKVLFEYmmGRETKTmAKVITTVLKFPDDQTQKILEREDARLm 2221
                                  2179      2189    | 2199      2209      2219 |
                                         2186-MSE   |                       2221-MSE
                                          2187-MSE  |                           
                                                 2194-MSE

Chain E from PDB  Type:PROTEIN  Length:168
 aligned with ARL1_HUMAN | P40616 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:168
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172        
          ARL1_HUMAN     13 FGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  180
               SCOP domains d1upte_ E: ADP-ribosylation factor                                                                                                                                       SCOP domains
               CATH domains 1uptE00 E:13-180 P-loop containing nucleotide triphosphate hydrolases                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeee.....hhhhhhhhhhhh..........eeeeeeee..eeeeeeee..hhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ARF  PDB: - UniProt: 11-177                                                                                                                                          --- PROSITE
           Transcript 1 (1) -----------------------------------Exon 1.3  PDB: E:48-75      -------------------------------------Exon 1.5  PDB: E:113-172 UniProt: 113-172                   -------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.2  PDB: E:13-48 UniProt: 2-48--------------------------Exon 1.4  PDB: E:75-112               -----------------------------------------------------------Exon 1.6  Transcript 1 (2)
                1upt E   13 HmTREmRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAmLEEEELRKAILVVFANKQDmEQAmTSSEmANSLGLPALKDRKWQIFKTSATKGTGLDEAmEWLVETLKSR  180
                             |   |  22        32        42        52        62        72        82        92       102       112       122       132 |    |142       152       162       172        
                            14-MSE                                                                                         110-MSE             130-MSE    |                            170-MSE      
                                18-MSE                                                                                                             134-MSE|                                         
                                                                                                                                                        139-MSE

Chain F from PDB  Type:PROTEIN  Length:56
 aligned with GOGA4_HUMAN | Q13439 from UniProtKB/Swiss-Prot  Length:2230

    Alignment length:57
                                  2180      2190      2200      2210      2220       
         GOGA4_HUMAN   2171 EPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLMFTSPRS 2227
               SCOP domains d1uptf_ F: Golgi autoantigen, golgin-245                  SCOP domains
               CATH domains 1uptF00 F:2171-2226 GRIP domain                           CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh-hhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.27 [INCOMPLETE]Exon 2.28  PDB: F:2193-2221  2.29b  Transcript 2
                1upt F 2171 EPTEFEYLRKVLFEYmmGRETKTmAKVITTVLKFPDDQTQKILEREDARLm-SWLRS 2226
                                  2180     |2190   |  2200      2210      2220| |    
                                        2186-MSE   |                       2221-MSE  
                                         2187-MSE  |                         2222    
                                                2194-MSE

Chain G from PDB  Type:PROTEIN  Length:170
 aligned with ARL1_HUMAN | P40616 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:179
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171         
          ARL1_HUMAN      2 GGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  180
               SCOP domains d   1up      tg_ G: ADP-ribosylation factor                                                                                                                                         SCOP domains
               CATH domains 1   upt      G00 G:11-180 P-loop containing nucleotide triphosphate hydrolases                                                                                                      CATH domains
           Pfam domains (1) -------------Arf-1uptG01 G:15-177                                                                                                                                               --- Pfam domains (1)
           Pfam domains (2) -------------Arf-1uptG02 G:15-177                                                                                                                                               --- Pfam domains (2)
           Pfam domains (3) -------------Arf-1uptG03 G:15-177                                                                                                                                               --- Pfam domains (3)
           Pfam domains (4) -------------Arf-1uptG04 G:15-177                                                                                                                                               --- Pfam domains (4)
         Sec.struct. author .---...------..eeeeeee.....hhhhhhhhhhhh..........eeeeeeee..eeeeeeee..hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------ARF  PDB: G:15-177 UniProt: 11-177                                                                                                                                     --- PROSITE
           Transcript 1 (1) 1---------------------------------------------Exon 1.3  PDB: G:48-75      -------------------------------------Exon 1.5  PDB: G:113-172 UniProt: 113-172                   -------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.2  PDB: G:11-48 (gaps) UniProt: 2-48    --------------------------Exon 1.4  PDB: G:75-112               -----------------------------------------------------------Exon 1.6  Transcript 1 (2)
                1upt G   11 G---SHm------TREmRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAmLEEEELRKAILVVFANKQDmEQAmTSSEmANSLGLPALKDRKWQIFKTSATKGTGLDEAmEWLVETLKSR  180
                            |   | |  -   |  | 21        31        41        51        61        71        81        91       101       111       121       131  |    141       151       161       171         
                           11  12 |     15  |                                                                                         110-MSE             130-MSE    |                            170-MSE      
                                 14-MSE    18-MSE                                                                                                             134-MSE|                                         
                                                                                                                                                                   139-MSE

Chain H from PDB  Type:PROTEIN  Length:51
 aligned with GOGA4_HUMAN | Q13439 from UniProtKB/Swiss-Prot  Length:2230

    Alignment length:51
                                  2179      2189      2199      2209      2219 
         GOGA4_HUMAN   2170 GEPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARL 2220
               SCOP domains d1upth_ H: Golgi autoantigen, golgin-245            SCOP domains
               CATH domains 1uptH00 H:2170-2220 GRIP domain                     CATH domains
           Pfam domains (1) -GRIP-1uptH01 H:2171-2213                   ------- Pfam domains (1)
           Pfam domains (2) -GRIP-1uptH02 H:2171-2213                   ------- Pfam domains (2)
           Pfam domains (3) -GRIP-1uptH03 H:2171-2213                   ------- Pfam domains (3)
           Pfam domains (4) -GRIP-1uptH04 H:2171-2213                   ------- Pfam domains (4)
         Sec.struct. author ..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------- PROSITE
               Transcript 2 Exon 2.27 [INCOMPLETE] Exon 2.28  PDB: H:2193-2220  Transcript 2
                1upt H 2170 GEPTEFEYLRKVLFEYmmGRETKTmAKVITTVLKFPDDQTQKILEREDARL 2220
                                  2179      2189    | 2199      2209      2219 
                                         2186-MSE   |                          
                                          2187-MSE  |                          
                                                 2194-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)

Human (Homo sapiens) (413)

1a	1uptG00	G:11-180
1b	1uptA00	A:13-181
1c	1uptE00	E:13-180
1d	1uptC00	C:19-180

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Annexin V; domain 1 (80)

Homologous Superfamily: GRIP domain (2)

Human (Homo sapiens) (1)

2a	1uptF00	F:2171-2226
2b	1uptD00	D:2170-2220
2c	1uptH00	H:2170-2220
2d	1uptB00	B:2171-2228

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: P-loop_NTPase (1112)

Family: Arf (26)

Homo sapiens (Human) (9)

1a	Arf-1uptG01	G:15-177
1b	Arf-1uptG02	G:15-177
1c	Arf-1uptG03	G:15-177
1d	Arf-1uptG04	G:15-177

Clan: no clan defined [family: GRIP] (2)

Family: GRIP (2)

Homo sapiens (Human) (2)

2a	GRIP-1uptH01	H:2171-2213
2b	GRIP-1uptH02	H:2171-2213
2c	GRIP-1uptH03	H:2171-2213
2d	GRIP-1uptH04	H:2171-2213

Asymmetric Unit(hide GO term definitions)

Chain A,C,E,G (ARL1_HUMAN | P40616)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0008047	enzyme activator activity	Binds to and increases the activity of an enzyme.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0019904	protein domain specific binding	Interacting selectively and non-covalently with a specific domain of a protein.
biological process
	GO:0007030	Golgi organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus.
	GO:0048193	Golgi vesicle transport	The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles.
	GO:0031584	activation of phospholipase D activity	Any process that initiates the activity of inactive phospholipase D.
	GO:0034067	protein localization to Golgi apparatus	A process in which a protein is transported to, or maintained in, a location within the Golgi apparatus.
	GO:0042147	retrograde transport, endosome to Golgi	The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
	GO:0007264	small GTPase mediated signal transduction	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
	GO:0009404	toxin metabolic process	The chemical reactions and pathways involving a toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005802	trans-Golgi network	The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
	GO:0032588	trans-Golgi network membrane	The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.

Chain B,D,F,H (GOGA4_HUMAN | Q13439)

molecular function
	GO:0051020	GTPase binding	Interacting selectively and non-covalently with a GTPase, any enzyme that catalyzes the hydrolysis of GTP.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0043001	Golgi to plasma membrane protein transport	The directed movement of proteins from the Golgi to the plasma membrane in transport vesicles that move from the trans-Golgi network to the plasma membrane.
	GO:0045773	positive regulation of axon extension	Any process that activates or increases the frequency, rate or extent of axon extension.
	GO:0000042	protein targeting to Golgi	The process of directing proteins towards the Golgi; usually uses signals contained within the protein.
	GO:0016192	vesicle-mediated transport	A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005802	trans-Golgi network	The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.

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	1upt
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(no "Related Entries Specified in the PDB File" available for 1UPT)

Description

Compounds

Structural Features

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Ligands, Modified Residues, Ions (3, 50)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (8, 30)

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