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(-) Description

Title :  CRYSTAL STRUCTURE OF GTP-BOUND ADP-RIBOSYLATION FACTOR LIKE PROTEIN 1 (ARL1) AND GRIP DOMAIN OF GOLGIN245 COMPLEX
 
Authors :  M. Wu, L. Lu, W. Hong, H. Song
Date :  04 Oct 03  (Deposition) - 13 Jan 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Ras-Like G Protein Structure, Three-Helix Grip Domain, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Wu, L. Lu, W. Hong, H. Song
Structural Basis For Recruitment Of Grip Domain Golgin-245 By Small Gtpase Arl1.
Nat. Struct. Mol. Biol. V. 11 86 2004
PubMed-ID: 14718928  |  Reference-DOI: 10.1038/NSMB714
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21 STAR
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ARL1 (RESIDUE 16-180)
    Gene: ARL1
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: ARL1
 
Molecule 2 - GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A MEMBER 4
    Chains: E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21 STAR
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: GRIP DOMAIN (RESIDUE 2172-2222)
    Gene: GOLGIN-245
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TRANS-GOLGI P230, 256 KDA GOLGIN, GOLGIN-245, 72.1 PROTEIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1GNP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG4Ligand/IonMAGNESIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:31 , THR A:45 , ILE A:46 , THR A:48 , GNP A:1201BINDING SITE FOR RESIDUE MG A 901
2AC2SOFTWARETHR B:31 , ILE B:46 , THR B:48 , GNP B:1202 , HOH B:1203BINDING SITE FOR RESIDUE MG B 902
3AC3SOFTWARETHR C:31 , ILE C:46 , THR C:48 , GNP C:1203 , HOH C:1260BINDING SITE FOR RESIDUE MG C 903
4AC4SOFTWARETHR D:31 , ILE D:46 , THR D:48 , GNP D:1204BINDING SITE FOR RESIDUE MG D 904
5AC5SOFTWAREGLY A:27 , ALA A:28 , GLY A:29 , LYS A:30 , THR A:31 , THR A:32 , VAL A:43 , THR A:45 , THR A:48 , GLY A:69 , GLY A:70 , ASN A:126 , LYS A:127 , ASP A:129 , MET A:130 , SER A:159 , ALA A:160 , THR A:161 , MG A:901 , HOH A:1203BINDING SITE FOR RESIDUE GNP A 1201
6AC6SOFTWAREGLY B:27 , ALA B:28 , GLY B:29 , LYS B:30 , THR B:31 , THR B:32 , VAL B:43 , THR B:45 , THR B:48 , GLY B:69 , GLY B:70 , ASN B:126 , LYS B:127 , ASP B:129 , SER B:159 , ALA B:160 , THR B:161 , MG B:902 , HOH B:1203BINDING SITE FOR RESIDUE GNP B 1202
7AC7SOFTWAREASP C:26 , GLY C:27 , ALA C:28 , GLY C:29 , LYS C:30 , THR C:31 , THR C:32 , VAL C:43 , THR C:45 , THR C:48 , GLY C:69 , GLY C:70 , ASN C:126 , LYS C:127 , ASP C:129 , SER C:159 , ALA C:160 , THR C:161 , MG C:903 , HOH C:1218 , HOH C:1223 , HOH C:1260BINDING SITE FOR RESIDUE GNP C 1203
8AC8SOFTWAREASP D:26 , GLY D:27 , ALA D:28 , GLY D:29 , LYS D:30 , THR D:31 , THR D:32 , VAL D:43 , THR D:45 , THR D:48 , GLY D:70 , ASN D:126 , LYS D:127 , ASP D:129 , MET D:130 , SER D:159 , ALA D:160 , THR D:161 , MG D:904 , HOH D:1207 , HOH D:1248BINDING SITE FOR RESIDUE GNP D 1204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1R4A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1R4A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1R4A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1R4A)

(-) Exons   (8, 32)

Asymmetric/Biological Unit (8, 32)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSRNOT000000076231ENSRNOE00000425060chr7:25403842-25404017176ARL1_RAT1-220--
1.2ENSRNOT000000076232ENSRNOE00000053794chr7:25405900-25406037138ARL1_RAT2-48474A:16-48
B:16-48
C:16-48
D:16-48		33
33
33
33
1.3ENSRNOT000000076233ENSRNOE00000053965chr7:25408414-2540849582ARL1_RAT48-75284A:48-75
B:48-75
C:48-75
D:48-75		28
28
28
28
1.4ENSRNOT000000076234ENSRNOE00000054153chr7:25409894-25410005112ARL1_RAT75-112384A:75-112
B:75-112
C:75-112
D:75-112		38
38
38
38
1.7aENSRNOT000000076237aENSRNOE00000242145chr7:25415331-25415518188ARL1_RAT113-175634A:113-175
B:113-175
C:113-175
D:113-175		63
63
63
63
1.8ENSRNOT000000076238ENSRNOE00000339243chr7:25415884-254168931010ARL1_RAT175-184104A:175-180
B:175-180
C:175-180
D:175-180		6
6
6
6
2.1aENST000003619241aENSE00001954251chr3:37284668-37285113446GOGA4_HUMAN1-24240--
2.4bENST000003619244bENSE00001251040chr3:37292886-3729297590GOGA4_HUMAN25-54300--
2.7bENST000003619247bENSE00001251031chr3:37323449-37323763315GOGA4_HUMAN55-1591050--
2.8ENST000003619248ENSE00001251023chr3:37327505-3732755248GOGA4_HUMAN160-175160--
2.10aENST0000036192410aENSE00001251016chr3:37330726-3733078257GOGA4_HUMAN176-194190--
2.11aENST0000036192411aENSE00001800584chr3:37336470-3733656899GOGA4_HUMAN195-227330--
2.12ENST0000036192412ENSE00001663626chr3:37337578-37337710133GOGA4_HUMAN228-272450--
2.13ENST0000036192413ENSE00001714886chr3:37340324-37340511188GOGA4_HUMAN272-334630--
2.14ENST0000036192414ENSE00001790783chr3:37340779-3734086284GOGA4_HUMAN335-362280--
2.15ENST0000036192415ENSE00001758865chr3:37343676-37343823148GOGA4_HUMAN363-412500--
2.17bENST0000036192417bENSE00001690632chr3:37356911-37357089179GOGA4_HUMAN412-471600--
2.18aENST0000036192418aENSE00001138663chr3:37360554-37360685132GOGA4_HUMAN472-515440--
2.19bENST0000036192419bENSE00001138651chr3:37363222-37363377156GOGA4_HUMAN516-567520--
2.20cENST0000036192420cENSE00001303935chr3:37365079-373693164238GOGA4_HUMAN568-198014130--
2.21ENST0000036192421ENSE00001250910chr3:37369907-37370028122GOGA4_HUMAN1980-2021420--
2.22aENST0000036192422aENSE00001250902chr3:37370454-37370584131GOGA4_HUMAN2021-2064440--
2.23ENST0000036192423ENSE00001296324chr3:37376544-37376657114GOGA4_HUMAN2065-2102380--
2.24ENST0000036192424ENSE00001296753chr3:37378634-3737865421GOGA4_HUMAN2103-210970--
2.25ENST0000036192425ENSE00001315030chr3:37379157-3737922569GOGA4_HUMAN2110-2132230--
2.26ENST0000036192426ENSE00001296621chr3:37381615-3738169076GOGA4_HUMAN2133-2158260--
2.27ENST0000036192427ENSE00001316090chr3:37388684-37388787104GOGA4_HUMAN2158-2192354E:2172-2192
F:2172-2192
G:2172-2192
H:2172-2192		21
21
21
21
2.28ENST0000036192428ENSE00001298280chr3:37396592-3739667887GOGA4_HUMAN2193-2221294E:2193-2221
F:2193-2221
G:2193-2221
H:2193-2221		29
29
29
29
2.29bENST0000036192429bENSE00001435056chr3:37402734-3740279663GOGA4_HUMAN2222-223094E:2222-2222
F:2222-2222
G:2222-2222
H:2222-2222		1
1
1
1
2.30dENST0000036192430dENSE00001673232chr3:37407571-37408242672GOGA4_HUMAN-00--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:165
 aligned with ARL1_RAT | P61212 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:165
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175     
            ARL1_RAT     16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  180
               SCOP domains d1r4aa_ A: ADP-ribosylation factor                                                                                                                                    SCOP domains
               CATH domains 1r4aA00 A:16-180 P-loop containing nucleotide triphosphate hydrolases                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhh.............eeeeeee....eeeeeee..hhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:16-48           --------------------------Exon 1.4  PDB: A:75-112               Exon 1.7a  PDB: A:113-175 UniProt: 113-175                     ----- Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.3  PDB: A:48-75      ---------------------------------------------------------------------------------------------------1.8    Transcript 1 (2)
                1r4a A   16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  180
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175     


Chain B from PDB  Type:PROTEIN  Length:165
 aligned with ARL1_RAT | P61212 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:165
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175     
            ARL1_RAT     16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  180
               SCOP domains d1r4ab_ B: ADP-ribosylation factor                                                                                                                                    SCOP domains
               CATH domains 1r4aB00 B:16-180 P-loop containing nucleotide triphosphate hydrolases                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....hhhhhhhhh.............eeeeee......eeeeee.....hhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: B:16-48           --------------------------Exon 1.4  PDB: B:75-112               Exon 1.7a  PDB: B:113-175 UniProt: 113-175                     ----- Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.3  PDB: B:48-75      ---------------------------------------------------------------------------------------------------1.8    Transcript 1 (2)
                1r4a B   16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  180
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175     


Chain C from PDB  Type:PROTEIN  Length:165
 aligned with ARL1_RAT | P61212 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:165
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175     
            ARL1_RAT     16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  180
               SCOP domains d1r4ac_ C: ADP-ribosylation factor                                                                                                                                    SCOP domains
               CATH domains 1r4aC00 C:16-180 P-loop containing nucleotide triphosphate hydrolases                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhh.............eeeeeee....eeeeeee..hhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: C:16-48           --------------------------Exon 1.4  PDB: C:75-112               Exon 1.7a  PDB: C:113-175 UniProt: 113-175                     ----- Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.3  PDB: C:48-75      ---------------------------------------------------------------------------------------------------1.8    Transcript 1 (2)
                1r4a C   16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  180
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175     


Chain D from PDB  Type:PROTEIN  Length:165
 aligned with ARL1_RAT | P61212 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:165
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175     
            ARL1_RAT     16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  180
               SCOP domains d1r4ad_ D: ADP-ribosylation factor                                                                                                                                    SCOP domains
               CATH domains 1r4aD00 D:16-180 P-loop containing nucleotide triphosphate hydrolases                                                                                                 CATH domains
           Pfam domains (1) Arf-1r4aD01 D:16-177                                                                                                                                              --- Pfam domains (1)
           Pfam domains (2) Arf-1r4aD02 D:16-177                                                                                                                                              --- Pfam domains (2)
           Pfam domains (3) Arf-1r4aD03 D:16-177                                                                                                                                              --- Pfam domains (3)
           Pfam domains (4) Arf-1r4aD04 D:16-177                                                                                                                                              --- Pfam domains (4)
         Sec.struct. author ..eeeeee.....hhhhhhhhh.............eeeeee......eeeeee..hhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: D:16-48           --------------------------Exon 1.4  PDB: D:75-112               Exon 1.7a  PDB: D:113-175 UniProt: 113-175                     ----- Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.3  PDB: D:48-75      ---------------------------------------------------------------------------------------------------1.8    Transcript 1 (2)
                1r4a D   16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  180
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175     


Chain E from PDB  Type:PROTEIN  Length:51
 aligned with GOGA4_HUMAN | Q13439 from UniProtKB/Swiss-Prot  Length:2230

    Alignment length:51
                                  2181      2191      2201      2211      2221 
         GOGA4_HUMAN   2172 PTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLMF 2222
               SCOP domains d1r4ae_ E: Golgi autoantigen, golgin-245            SCOP domains
               CATH domains 1r4aE00 E:2172-2222 GRIP domain                     CATH domains
               Pfam domains --------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------- PROSITE
               Transcript 2 Exon 2.27            Exon 2.28  PDB: E:2193-2221  2 Transcript 2
                1r4a E 2172 PTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLMF 2222
                                  2181      2191      2201      2211      2221 


Chain F from PDB  Type:PROTEIN  Length:51
 aligned with GOGA4_HUMAN | Q13439 from UniProtKB/Swiss-Prot  Length:2230

    Alignment length:51
                                  2181      2191      2201      2211      2221 
         GOGA4_HUMAN   2172 PTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLMF 2222
               SCOP domains d1r4af_ F: Golgi autoantigen, golgin-245            SCOP domains
               CATH domains 1r4aF00 F:2172-2222 GRIP domain                     CATH domains
               Pfam domains --------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------- PROSITE
               Transcript 2 Exon 2.27            Exon 2.28  PDB: F:2193-2221  2 Transcript 2
                1r4a F 2172 PTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLMF 2222
                                  2181      2191      2201      2211      2221 


Chain G from PDB  Type:PROTEIN  Length:51
 aligned with GOGA4_HUMAN | Q13439 from UniProtKB/Swiss-Prot  Length:2230

    Alignment length:51
                                  2181      2191      2201      2211      2221 
         GOGA4_HUMAN   2172 PTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLMF 2222
               SCOP domains d1r4ag_ G: Golgi autoantigen, golgin-245            SCOP domains
               CATH domains 1r4aG00 G:2172-2222 GRIP domain                     CATH domains
               Pfam domains --------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------- PROSITE
               Transcript 2 Exon 2.27            Exon 2.28  PDB: G:2193-2221  2 Transcript 2
                1r4a G 2172 PTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLMF 2222
                                  2181      2191      2201      2211      2221 


Chain H from PDB  Type:PROTEIN  Length:51
 aligned with GOGA4_HUMAN | Q13439 from UniProtKB/Swiss-Prot  Length:2230

    Alignment length:51
                                  2181      2191      2201      2211      2221 
         GOGA4_HUMAN   2172 PTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLMF 2222
               SCOP domains d1r4ah_ H: Golgi autoantigen, golgin-245            SCOP domains
               CATH domains 1r4aH00 H:2172-2222 GRIP domain                     CATH domains
           Pfam domains (1) GRIP-1r4aH01 H:2172-2213                  --------- Pfam domains (1)
           Pfam domains (2) GRIP-1r4aH02 H:2172-2213                  --------- Pfam domains (2)
           Pfam domains (3) GRIP-1r4aH03 H:2172-2213                  --------- Pfam domains (3)
           Pfam domains (4) GRIP-1r4aH04 H:2172-2213                  --------- Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------- PROSITE
               Transcript 2 Exon 2.27            Exon 2.28  PDB: H:2193-2221  2 Transcript 2
                1r4a H 2172 PTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLMF 2222
                                  2181      2191      2201      2211      2221
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Clan: P-loop_NTPase (1112)
(-)
Family: Arf (26)
(-)
Rattus norvegicus (Rat) (3)
1aArf-1r4aD01D:16-177
1bArf-1r4aD02D:16-177
1cArf-1r4aD03D:16-177
1dArf-1r4aD04D:16-177
(-)
Clan: no clan defined [family: GRIP] (2)
(-)
Family: GRIP (2)
(-)
Homo sapiens (Human) (2)
2aGRIP-1r4aH01H:2172-2213
2bGRIP-1r4aH02H:2172-2213
2cGRIP-1r4aH03H:2172-2213
2dGRIP-1r4aH04H:2172-2213

(-) Gene Ontology  (29, 36)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (ARL1_RAT | P61212)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0008047    enzyme activator activity    Binds to and increases the activity of an enzyme.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
biological process
    GO:0007030    Golgi organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus.
    GO:0048193    Golgi vesicle transport    The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles.
    GO:0031584    activation of phospholipase D activity    Any process that initiates the activity of inactive phospholipase D.
    GO:0034067    protein localization to Golgi apparatus    A process in which a protein is transported to, or maintained in, a location within the Golgi apparatus.
    GO:0042147    retrograde transport, endosome to Golgi    The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
    GO:0007264    small GTPase mediated signal transduction    Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
    GO:0009404    toxin metabolic process    The chemical reactions and pathways involving a toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005802    trans-Golgi network    The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.

Chain E,F,G,H   (GOGA4_HUMAN | Q13439)
molecular function
    GO:0051020    GTPase binding    Interacting selectively and non-covalently with a GTPase, any enzyme that catalyzes the hydrolysis of GTP.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0043001    Golgi to plasma membrane protein transport    The directed movement of proteins from the Golgi to the plasma membrane in transport vesicles that move from the trans-Golgi network to the plasma membrane.
    GO:0045773    positive regulation of axon extension    Any process that activates or increases the frequency, rate or extent of axon extension.
    GO:0000042    protein targeting to Golgi    The process of directing proteins towards the Golgi; usually uses signals contained within the protein.
    GO:0016192    vesicle-mediated transport    A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005802    trans-Golgi network    The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.

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  GOGA4_HUMAN | Q13439
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 Related Entries

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        GOGA4_HUMAN | Q13439: 1upt

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