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(-) Description

Title :  STRUCTURE OF THE 6-PHOSPHO-BETA GLUCOSIDASE FROM THERMOTOGA MARITIMA AT 2.85 ANGSTROM RESOLUTION IN THE MONOCLINIC FORM
 
Authors :  A. Varrot, V. L. Yip, S. G. Withers, G. J. Davies
Date :  26 Sep 03  (Deposition) - 18 Nov 04  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Hydrolase, 6-Phospho-Beta-Glucosidase, Family4 Hydrolase, Nad-Dependent (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Varrot, V. L. Yip, Y. Li, S. S. Rajan, X. Yang, W. F. Anderson, J. Thompson, S. G. Withers, G. J. Davies
Nad+ And Metal-Ion Dependent Hydrolysis By Family 4 Glycosidases: Structural Insight Into Specificity For Phospho-Beta-D-Glucosides
J. Mol. Biol. V. 346 423 2005
PubMed-ID: 15670594  |  Reference-DOI: 10.1016/J.JMB.2004.11.058

(-) Compounds

Molecule 1 - 6-PHOSPHO-BETA-GLUCOSIDASE
    Atcc: 43589
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.2.1.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET16B
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Other Details: SYNTHETIC GENE
    Strain: MSB8

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 56)

Asymmetric Unit (1, 56)
No.NameCountTypeFull Name
1MSE56Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 28)
No.NameCountTypeFull Name
1MSE28Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 28)
No.NameCountTypeFull Name
1MSE28Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1UP4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UP4)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Asn A:140 -Pro A:141
2Asn B:140 -Pro B:141
3Asn C:140 -Pro C:141
4Asn D:140 -Pro D:141
5Asn E:140 -Pro E:141
6Asn F:140 -Pro F:141
7Asn G:140 -Pro G:141
8Asn H:140 -Pro H:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UP4)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F4PS01324 Glycosyl hydrolases family 4 signature.BGLT_THEMA131-162
 
 
 
 
 
 
 		  8A:131-162
B:131-162
C:131-162
D:131-162
E:131-162
F:131-162
G:131-162
H:131-162
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F4PS01324 Glycosyl hydrolases family 4 signature.BGLT_THEMA131-162
 
 
 
 
 
 
 		  4A:131-162
B:131-162
C:131-162
D:131-162
-
-
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F4PS01324 Glycosyl hydrolases family 4 signature.BGLT_THEMA131-162
 
 
 
 
 
 
 		  4-
-
-
-
E:131-162
F:131-162
G:131-162
H:131-162

(-) Exons   (0, 0)

(no "Exon" information available for 1UP4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:410
 aligned with BGLT_THEMA | Q9X108 from UniProtKB/Swiss-Prot  Length:415

    Alignment length:415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
           BGLT_THEMA     1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
               SCOP domains d1up4a1 A:1-162 6-phospho-beta-glucosidase                                                                                                                        d1up4a2 A:163-415 6-phospho-beta-glucosidase                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh...eeee..hhhhhhh...eeee....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhh.....eee..hhhhhhhhhhhhhhh.hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhh..-----....hhhhhhhhh.ee...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.....hhhhhh....hhhhhhhhhhhhhhh...eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1up4 A   1 mRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEmFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLK-----DEDFPTWFYDSVRLIVNPYLRYYLmEKKmFKKISTHELRAREVmKIEKELFEKYRTAVEIPEELTKRGGSmYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKmYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210      |  -  |    230       240      |250|      260     | 270       280       290  |    300       310       320       330       340       350       360   |   370       380       390       400       410     
                            |                                                                                                                                                                           175-MSE                                   217   223                     247-MSE            266-MSE                    293-MSE                                                                364-MSE                                               
                            1-MSE                                                                                                                                                                                                                                                   251-MSE                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:403
 aligned with BGLT_THEMA | Q9X108 from UniProtKB/Swiss-Prot  Length:415

    Alignment length:415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
           BGLT_THEMA     1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
               SCOP domains d1up4b1 B:1-162 6-phospho-beta-glucosidase                                                                                                                        d1up4b2 B:163-415 6-phospho-beta-glucosidase                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh...eeee..hhhhhhh...eeee....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh.....eee..hhhhhhhhhhhhhh..hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhh..------...hhhhhhhhh.ee...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh........------.hhhhhhhhhhhhhhh...eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1up4 B   1 mRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEmFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLK------EDFPTWFYDSVRLIVNPYLRYYLmEKKmFKKISTHELRAREVmKIEKELFEKYRTAVEIPEE------SmYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKmYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210      |  -   |   230       240      |250|      260     | 270       280    |    - ||    300       310       320       330       340       350       360   |   370       380       390       400       410     
                            1-MSE                                                                                                                                                                       175-MSE                                   217    224                    247-MSE            266-MSE            285    292|                                                                    364-MSE                                               
                                                                                                                                                                                                                                                                                    251-MSE                                   293-MSE                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:408
 aligned with BGLT_THEMA | Q9X108 from UniProtKB/Swiss-Prot  Length:415

    Alignment length:415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
           BGLT_THEMA     1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
               SCOP domains d1up4c1 C:1-162 6-phospho-beta-glucosidase                                                                                                                        d1up4c2 C:163-415 6-phospho-beta-glucosidase                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh...eeee..hhhhhhh...eeee....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhh.....eee..hhhhhhhhhhhhhhh.hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhh.-------...hhhhhhhhh.ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhh....hhhhhhhhhhhhhhh...eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1up4 C   1 mRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEmFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKL-------EDFPTWFYDSVRLIVNPYLRYYLmEKKmFKKISTHELRAREVmKIEKELFEKYRTAVEIPEELTKRGGSmYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKmYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210     |   -   |   230       240      |250|      260     | 270       280       290  |    300       310       320       330       340       350       360   |   370       380       390       400       410     
                            1-MSE                                                                                                                                                                       175-MSE                                  216     224                    247-MSE            266-MSE                    293-MSE                                                                364-MSE                                               
                                                                                                                                                                                                                                                                                    251-MSE                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:400
 aligned with BGLT_THEMA | Q9X108 from UniProtKB/Swiss-Prot  Length:415

    Alignment length:415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
           BGLT_THEMA     1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
               SCOP domains d1up4d1 D:1-162 6-phospho-beta-glucosidase                                                                                                                        d1up4d2 D:163-415 6-phospho-beta-glucosidase                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh...eeee..hhhhhhh...eeee....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhh.....eee..hhhhhhhhhhhhhh..hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhh.-------...hhhhhhhhh.ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.......--------hhhhhhhhhhhhhhh...eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1up4 D   1 mRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEmFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKL-------EDFPTWFYDSVRLIVNPYLRYYLmEKKmFKKISTHELRAREVmKIEKELFEKYRTAVEIPE--------mYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKmYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210     |   -   |   230       240      |250|      260     | 270       280   |     -  |    300       310       320       330       340       350       360   |   370       380       390       400       410     
                            1-MSE                                                                                                                                                                       175-MSE                                  216     224                    247-MSE            266-MSE           284      293-MSE                                                                364-MSE                                               
                                                                                                                                                                                                                                                                                    251-MSE                                                                                                                                                                


Chain E from PDB  Type:PROTEIN  Length:396
 aligned with BGLT_THEMA | Q9X108 from UniProtKB/Swiss-Prot  Length:415

    Alignment length:415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
           BGLT_THEMA     1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
               SCOP domains d1up4e1 E:1-162 6-phospho-beta-glucosidase                                                                                                                        d1up4e2 E:163-415 6-phospho-beta-glucosidase                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh...eeee..hhhhhhh...eeee....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhh.....eee..hhhhhhhhhhhhhhh.hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhh..-------..hhhhhhhhh.ee...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh------...------..hhhhhhhhhhhhhhh...eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1up4 E   1 mRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEmFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLK-------DFPTWFYDSVRLIVNPYLRYYLmEKKmFKKISTHELRAREVmKIEKELFEK------IPE------GSmYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKmYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210      |  -    |  230       240      |250|      260     | 270    |    - | |     -| |    300       310       320       330       340       350       360   |   370       380       390       400       410     
                            1-MSE                                                                                                                                                                       175-MSE                                   217     225                   247-MSE            266-MSE  275    282 |    291 |                                                                    364-MSE                                               
                                                                                                                                                                                                                                                                                    251-MSE                          284      293-MSE                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:399
 aligned with BGLT_THEMA | Q9X108 from UniProtKB/Swiss-Prot  Length:415

    Alignment length:415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
           BGLT_THEMA     1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
               SCOP domains d1up4f1 F:1-162 6-phospho-beta-glucosidase                                                                                                                        d1up4f2 F:163-415 6-phospho-beta-glucosidase                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh...eeee..hhhhhhh...eeee....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhh.....eee..hhhhhhhhhhhhhh..hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhh-------....hhhhhhhhh.ee...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh......---------hhhhhhhhhhhhhhh...eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1up4 F   1 mRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEmFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLK-------DEDFPTWFYDSVRLIVNPYLRYYLmEKKmFKKISTHELRAREVmKIEKELFEKYRTAVEIP---------mYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKmYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210    |    -  |    230       240      |250|      260     | 270       280  |      -  |    300       310       320       330       340       350       360   |   370       380       390       400       410     
                            1-MSE                                                                                                                                                                       175-MSE                                 215     223                     247-MSE            266-MSE          283       293-MSE                                                                364-MSE                                               
                                                                                                                                                                                                                                                                                    251-MSE                                                                                                                                                                


Chain G from PDB  Type:PROTEIN  Length:409
 aligned with BGLT_THEMA | Q9X108 from UniProtKB/Swiss-Prot  Length:415

    Alignment length:415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
           BGLT_THEMA     1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
               SCOP domains d1up4g1 G:1-162 6-phospho-beta-glucosidase                                                                                                                        d1up4g2 G:163-415 6-phospho-beta-glucosidase                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh...eeee..hhhhhhh...eeee....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh.....eee..hhhhhhhhhhhhhhh.hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhh.------....hhhhhhhhh.ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhh....hhhhhhhhhhhhhhh...eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1up4 G   1 mRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEmFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKL------DEDFPTWFYDSVRLIVNPYLRYYLmEKKmFKKISTHELRAREVmKIEKELFEKYRTAVEIPEELTKRGGSmYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKmYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210     |   -  |    230       240      |250|      260     | 270       280       290  |    300       310       320       330       340       350       360   |   370       380       390       400       410     
                            1-MSE                                                                                                                                                                       175-MSE                                  216    223                     247-MSE            266-MSE                    293-MSE                                                                364-MSE                                               
                                                                                                                                                                                                                                                                                    251-MSE                                                                                                                                                                


Chain H from PDB  Type:PROTEIN  Length:403
 aligned with BGLT_THEMA | Q9X108 from UniProtKB/Swiss-Prot  Length:415

    Alignment length:415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
           BGLT_THEMA     1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
               SCOP domains d1up4h1 H:1-162 6-phospho-beta-glucosidase                                                                                                                        d1up4h2 H:163-415 6-phospho-beta-glucosidase                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Glyco_hydro_4-1up4H09 H:2-178                                                                                                                                                    --Glyco_hydro_4C-1up4H01 H:181-391                                                                                                                                                                                   ------------------------ Pfam domains (1)
           Pfam domains (2) -Glyco_hydro_4-1up4H10 H:2-178                                                                                                                                                    --Glyco_hydro_4C-1up4H02 H:181-391                                                                                                                                                                                   ------------------------ Pfam domains (2)
           Pfam domains (3) -Glyco_hydro_4-1up4H11 H:2-178                                                                                                                                                    --Glyco_hydro_4C-1up4H03 H:181-391                                                                                                                                                                                   ------------------------ Pfam domains (3)
           Pfam domains (4) -Glyco_hydro_4-1up4H12 H:2-178                                                                                                                                                    --Glyco_hydro_4C-1up4H04 H:181-391                                                                                                                                                                                   ------------------------ Pfam domains (4)
           Pfam domains (5) -Glyco_hydro_4-1up4H13 H:2-178                                                                                                                                                    --Glyco_hydro_4C-1up4H05 H:181-391                                                                                                                                                                                   ------------------------ Pfam domains (5)
           Pfam domains (6) -Glyco_hydro_4-1up4H14 H:2-178                                                                                                                                                    --Glyco_hydro_4C-1up4H06 H:181-391                                                                                                                                                                                   ------------------------ Pfam domains (6)
           Pfam domains (7) -Glyco_hydro_4-1up4H15 H:2-178                                                                                                                                                    --Glyco_hydro_4C-1up4H07 H:181-391                                                                                                                                                                                   ------------------------ Pfam domains (7)
           Pfam domains (8) -Glyco_hydro_4-1up4H16 H:2-178                                                                                                                                                    --Glyco_hydro_4C-1up4H08 H:181-391                                                                                                                                                                                   ------------------------ Pfam domains (8)
         Sec.struct. author .eeeee.....hhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh...eeee..hhhhhhh...eeee....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhh.....eee..hhhhhhhhhhhhhhh.hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhh.------....hhhhhhhhh.ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh........------.hhhhhhhhhhhhhhh...eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1up4 H   1 mRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPINFIREIAEmFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKL------DEDFPTWFYDSVRLIVNPYLRYYLmEKKmFKKISTHELRAREVmKIEKELFEKYRTAVEIPEE------SmYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKmYERLTIEAYLKRSKKLALKALLSHPLGPDVEDAKDLLEEILEANREYVKLG 415
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210     |   -  |    230       240      |250|      260     | 270       280    |    - ||    300       310       320       330       340       350       360   |   370       380       390       400       410     
                            1-MSE                                                                                                                                                                       175-MSE                                  216    223                     247-MSE            266-MSE            285    292|                                                                    364-MSE                                               
                                                                                                                                                                                                                                                                                    251-MSE                                   293-MSE
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 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1UP4)

(-) Pfam Domains  (2, 16)

Asymmetric Unit
(-)
Clan: LDH_C (56)
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (BGLT_THEMA | Q9X108)
molecular function
    GO:0008706    6-phospho-beta-glucosidase activity    Catalysis of the reaction: 6-phospho-beta-D-glucoside-(1,4)-D-glucose + H2O = D-glucose 6-phosphate + glucose.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BGLT_THEMA | Q9X108: 1up6 1up7

(-) Related Entries Specified in the PDB File

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