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1UP4
Biol. Unit 1
Info
Asym.Unit (532 KB)
Biol.Unit 1 (266 KB)
Biol.Unit 2 (264 KB)
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(1)
Title
:
STRUCTURE OF THE 6-PHOSPHO-BETA GLUCOSIDASE FROM THERMOTOGA MARITIMA AT 2.85 ANGSTROM RESOLUTION IN THE MONOCLINIC FORM
Authors
:
A. Varrot, V. L. Yip, S. G. Withers, G. J. Davies
Date
:
26 Sep 03 (Deposition) - 18 Nov 04 (Release) - 28 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Hydrolase, 6-Phospho-Beta-Glucosidase, Family4 Hydrolase, Nad-Dependent
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Varrot, V. L. Yip, Y. Li, S. S. Rajan, X. Yang, W. F. Anderson, J. Thompson, S. G. Withers, G. J. Davies
Nad+ And Metal-Ion Dependent Hydrolysis By Family 4 Glycosidases: Structural Insight Into Specificity For Phospho-Beta-D-Glucosides
J. Mol. Biol. V. 346 423 2005
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Hetero Components
(1, 28)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1ak: SELENOMETHIONINE (MSEak)
1al: SELENOMETHIONINE (MSEal)
1am: SELENOMETHIONINE (MSEam)
1an: SELENOMETHIONINE (MSEan)
1ao: SELENOMETHIONINE (MSEao)
1ap: SELENOMETHIONINE (MSEap)
1aq: SELENOMETHIONINE (MSEaq)
1ar: SELENOMETHIONINE (MSEar)
1as: SELENOMETHIONINE (MSEas)
1at: SELENOMETHIONINE (MSEat)
1au: SELENOMETHIONINE (MSEau)
1av: SELENOMETHIONINE (MSEav)
1aw: SELENOMETHIONINE (MSEaw)
1ax: SELENOMETHIONINE (MSEax)
1ay: SELENOMETHIONINE (MSEay)
1az: SELENOMETHIONINE (MSEaz)
1b: SELENOMETHIONINE (MSEb)
1ba: SELENOMETHIONINE (MSEba)
1bb: SELENOMETHIONINE (MSEbb)
1bc: SELENOMETHIONINE (MSEbc)
1bd: SELENOMETHIONINE (MSEbd)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
28
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F4 (A:131-162,B:131-162,C:131-162,D:13...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F4
PS01324
Glycosyl hydrolases family 4 signature.
BGLT_THEMA
131-162
4
A:131-162
B:131-162
C:131-162
D:131-162
-
-
-
-
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1up4a2 (A:163-415)
1b: SCOP_d1up4b2 (B:163-415)
1c: SCOP_d1up4c2 (C:163-415)
1d: SCOP_d1up4d2 (D:163-415)
1e: SCOP_d1up4e2 (E:163-415)
1f: SCOP_d1up4f2 (F:163-415)
1g: SCOP_d1up4g2 (G:163-415)
1h: SCOP_d1up4h2 (H:163-415)
2a: SCOP_d1up4a1 (A:1-162)
2b: SCOP_d1up4b1 (B:1-162)
2c: SCOP_d1up4c1 (C:1-162)
2d: SCOP_d1up4d1 (D:1-162)
2e: SCOP_d1up4e1 (E:1-162)
2f: SCOP_d1up4f1 (F:1-162)
2g: SCOP_d1up4g1 (G:1-162)
2h: SCOP_d1up4h1 (H:1-162)
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Classes
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)
(
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)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
AglA-like glucosidase
(9)
Protein domain
:
6-phospho-beta-glucosidase
(4)
Thermotoga maritima [TaxId: 2336]
(3)
1a
d1up4a2
A:163-415
1b
d1up4b2
B:163-415
1c
d1up4c2
C:163-415
1d
d1up4d2
D:163-415
1e
d1up4e2
E:163-415
1f
d1up4f2
F:163-415
1g
d1up4g2
G:163-415
1h
d1up4h2
H:163-415
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
LDH N-terminal domain-like
(117)
Protein domain
:
6-phospho-beta-glucosidase
(4)
Thermotoga maritima [TaxId: 2336]
(3)
2a
d1up4a1
A:1-162
2b
d1up4b1
B:1-162
2c
d1up4c1
C:1-162
2d
d1up4d1
D:1-162
2e
d1up4e1
E:1-162
2f
d1up4f1
F:1-162
2g
d1up4g1
G:1-162
2h
d1up4h1
H:1-162
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_4C_1up4H01 (H:181-391)
1b: PFAM_Glyco_hydro_4C_1up4H02 (H:181-391)
1c: PFAM_Glyco_hydro_4C_1up4H03 (H:181-391)
1d: PFAM_Glyco_hydro_4C_1up4H04 (H:181-391)
1e: PFAM_Glyco_hydro_4C_1up4H05 (H:181-391)
1f: PFAM_Glyco_hydro_4C_1up4H06 (H:181-391)
1g: PFAM_Glyco_hydro_4C_1up4H07 (H:181-391)
1h: PFAM_Glyco_hydro_4C_1up4H08 (H:181-391)
2a: PFAM_Glyco_hydro_4_1up4H09 (H:2-178)
2b: PFAM_Glyco_hydro_4_1up4H10 (H:2-178)
2c: PFAM_Glyco_hydro_4_1up4H11 (H:2-178)
2d: PFAM_Glyco_hydro_4_1up4H12 (H:2-178)
2e: PFAM_Glyco_hydro_4_1up4H13 (H:2-178)
2f: PFAM_Glyco_hydro_4_1up4H14 (H:2-178)
2g: PFAM_Glyco_hydro_4_1up4H15 (H:2-178)
2h: PFAM_Glyco_hydro_4_1up4H16 (H:2-178)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
LDH_C
(56)
Family
:
Glyco_hydro_4C
(5)
Thermotoga maritima
(4)
1a
Glyco_hydro_4C-1up4H01
H:181-391
1b
Glyco_hydro_4C-1up4H02
H:181-391
1c
Glyco_hydro_4C-1up4H03
H:181-391
1d
Glyco_hydro_4C-1up4H04
H:181-391
1e
Glyco_hydro_4C-1up4H05
H:181-391
1f
Glyco_hydro_4C-1up4H06
H:181-391
1g
Glyco_hydro_4C-1up4H07
H:181-391
1h
Glyco_hydro_4C-1up4H08
H:181-391
Clan
:
NADP_Rossmann
(1239)
Family
:
Glyco_hydro_4
(5)
Thermotoga maritima
(4)
2a
Glyco_hydro_4-1up4H09
H:2-178
2b
Glyco_hydro_4-1up4H10
H:2-178
2c
Glyco_hydro_4-1up4H11
H:2-178
2d
Glyco_hydro_4-1up4H12
H:2-178
2e
Glyco_hydro_4-1up4H13
H:2-178
2f
Glyco_hydro_4-1up4H14
H:2-178
2g
Glyco_hydro_4-1up4H15
H:2-178
2h
Glyco_hydro_4-1up4H16
H:2-178
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